Wall clock time and date at job start Mon Mar 30 2020 01:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47044 * 2 1 4 4 C 1.50701 * 109.46643 * 239.99797 * 2 1 3 5 5 H 1.07997 * 119.99790 * 239.99621 * 4 2 1 6 6 C 1.37875 * 120.00143 * 60.00508 * 4 2 1 7 7 N 1.31523 * 119.99945 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00398 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47200 * 89.99244 * 8 6 4 10 10 H 1.48500 * 109.47206 * 209.99891 * 8 6 4 11 11 H 1.48504 * 109.46692 * 329.99684 * 8 6 4 12 12 C 1.52994 * 109.47026 * 120.00001 * 2 1 3 13 13 C 1.53124 * 109.52564 * 299.68100 * 12 2 1 14 14 C 1.53035 * 109.27794 * 182.44326 * 13 12 2 15 15 N 1.46844 * 109.52494 * 59.18054 * 14 13 12 16 16 C 1.46897 * 111.00090 * 174.16001 * 15 14 13 17 17 C 1.46854 * 111.19703 * 298.25280 * 15 14 13 18 18 C 1.53037 * 109.51886 * 61.74789 * 17 15 14 19 19 H 1.08996 * 109.47044 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46839 * 300.00281 * 1 2 3 21 21 H 1.08993 * 109.47187 * 59.99787 * 1 2 3 22 22 H 0.96996 * 119.99963 * 180.02562 * 7 6 4 23 23 H 1.08999 * 109.58045 * 59.84177 * 12 2 1 24 24 H 1.08999 * 109.50059 * 302.38272 * 13 12 2 25 25 H 1.08993 * 109.49981 * 62.49919 * 13 12 2 26 26 H 1.09002 * 109.46466 * 299.16376 * 14 13 12 27 27 H 1.09002 * 109.46192 * 179.19659 * 14 13 12 28 28 H 1.09004 * 109.47425 * 184.20891 * 16 15 14 29 29 H 1.08999 * 109.47215 * 304.20975 * 16 15 14 30 30 H 1.09004 * 109.47700 * 64.20982 * 16 15 14 31 31 H 1.08994 * 109.46310 * 301.73015 * 17 15 14 32 32 H 1.09004 * 109.45830 * 181.75702 * 17 15 14 33 33 H 1.09000 * 109.50480 * 180.88135 * 18 17 15 34 34 H 1.09002 * 109.53848 * 60.77851 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3446 -2.1616 -4.4123 10 1 2.4871 -0.1403 -5.1121 11 1 3.6307 -1.7567 -3.7120 12 6 2.0400 -0.7212 1.2492 13 6 1.5368 0.0043 2.5003 14 6 2.0999 -0.6854 3.7450 15 7 3.5673 -0.6592 3.6992 16 6 4.1424 -1.1887 4.9428 17 6 4.0752 -1.3906 2.5314 18 6 3.5713 -0.7219 1.2504 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 0.7082 1.1609 -3.4844 23 1 1.6753 -1.7484 1.2524 24 1 1.8693 1.0421 2.4775 25 1 0.4478 -0.0291 2.5269 26 1 1.7558 -1.7193 3.7744 27 1 1.7550 -0.1626 4.6371 28 1 5.2275 -1.0890 4.9128 29 1 3.7496 -0.6293 5.7918 30 1 3.8771 -2.2408 5.0469 31 1 3.7219 -2.4211 2.5664 32 1 5.1652 -1.3799 2.5421 33 1 3.9355 -1.2741 0.3841 34 1 3.9357 0.3045 1.2073 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259955983.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:29 Heat of formation + Delta-G solvation = -36.077218 kcal Electronic energy + Delta-G solvation = -13166.226944 eV Core-core repulsion = 11097.313123 eV Total energy + Delta-G solvation = -2068.913821 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.06377 -36.80662 -34.16759 -31.80264 -31.20854 -27.32729 -27.00321 -24.07552 -23.65893 -21.45021 -20.37948 -18.27831 -16.91383 -16.35487 -15.91293 -15.54006 -14.94982 -14.61938 -14.47510 -14.03203 -13.46439 -13.20458 -13.14678 -12.86559 -12.75444 -12.39278 -12.20505 -12.12028 -11.97451 -11.85195 -11.48097 -11.17492 -10.61835 -10.50725 -10.35832 -9.20331 -8.03909 -6.16450 1.41228 1.41993 1.51799 2.45550 3.09642 3.23319 4.06890 4.07977 4.11242 4.33389 4.51381 4.60249 4.66772 4.71772 4.81006 4.87679 4.94079 4.99511 5.04157 5.08304 5.14636 5.27696 5.40965 5.45134 5.53988 5.61569 5.69097 6.05850 6.17602 6.23298 6.27289 6.46040 6.95671 7.51022 9.00871 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.055019 B = 0.009412 C = 0.008359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.793853 B = 2974.348477 C = 3348.774138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.047 3.953 3 H -0.009 1.009 4 C -0.520 4.520 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.922 5.922 8 Si 0.949 3.051 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.267 1.267 12 C -0.070 4.070 13 C -0.108 4.108 14 C 0.063 3.937 15 N -0.559 5.559 16 C 0.026 3.974 17 C 0.064 3.936 18 C -0.097 4.097 19 H 0.023 0.977 20 H 0.033 0.967 21 H 0.049 0.951 22 H 0.258 0.742 23 H 0.044 0.956 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.030 0.970 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.026 0.974 31 H 0.029 0.971 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.993 -4.268 11.755 13.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.029 3.971 3 H 0.009 0.991 4 C -0.558 4.558 5 H 0.072 0.928 6 C -0.190 4.190 7 N -0.562 5.562 8 Si 0.775 3.225 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.192 1.192 12 C -0.089 4.089 13 C -0.146 4.146 14 C -0.064 4.064 15 N -0.284 5.284 16 C -0.121 4.121 17 C -0.064 4.064 18 C -0.135 4.135 19 H 0.042 0.958 20 H 0.052 0.948 21 H 0.068 0.932 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.049 0.951 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.073 -3.676 11.585 12.818 hybrid contribution -0.171 -1.001 -1.188 1.563 sum 3.902 -4.676 10.397 12.049 Atomic orbital electron populations 1.21695 0.98814 0.98498 0.99642 1.18636 0.92497 0.93938 0.92077 0.99124 1.21583 1.30345 1.12028 0.91826 0.92769 1.25749 0.95598 0.95785 1.01895 1.70040 1.38202 1.24398 1.23589 0.85690 0.78944 0.78337 0.79503 1.20321 1.21173 1.19184 1.21095 0.95097 0.98014 0.94704 1.21648 0.99809 0.99323 0.93830 1.22071 0.87106 0.98791 0.98476 1.61922 1.07489 1.55638 1.03370 1.22401 1.00711 0.97766 0.91258 1.22072 0.99808 0.94514 0.90018 1.21451 0.95742 1.00158 0.96163 0.95819 0.94814 0.93175 0.93292 0.93755 0.92919 0.91450 0.95133 0.89456 0.90690 0.90347 0.95530 0.95251 0.90022 0.92533 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.38 8.63 71.98 0.62 -5.76 16 2 C 0.05 2.40 1.90 -11.54 -0.02 2.38 16 3 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 4 C -0.52 -28.86 7.86 25.60 0.20 -28.66 16 5 H 0.05 2.94 6.72 -2.91 -0.02 2.92 16 6 C 0.01 0.41 5.30 84.65 0.45 0.86 16 7 N -0.92 -54.71 11.32 21.45 0.24 -54.46 16 8 Si 0.95 44.38 29.54 68.60 2.03 46.41 16 9 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 10 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 12 C -0.07 -2.93 1.80 -10.71 -0.02 -2.95 16 13 C -0.11 -3.81 4.96 30.65 0.15 -3.66 16 14 C 0.06 1.81 5.46 86.33 0.47 2.28 16 15 N -0.56 -16.06 4.91 -922.58 -4.53 -20.59 16 16 C 0.03 0.56 9.59 127.69 1.22 1.78 16 17 C 0.06 1.96 5.46 86.32 0.47 2.43 16 18 C -0.10 -3.77 5.08 30.65 0.16 -3.62 16 19 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 20 H 0.03 1.45 6.50 -2.39 -0.02 1.44 16 21 H 0.05 2.77 6.07 -2.39 -0.01 2.76 16 22 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 23 H 0.04 1.87 8.14 -2.39 -0.02 1.86 16 24 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.07 2.29 6.58 -2.39 -0.02 2.27 16 26 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.09 2.12 8.09 -2.39 -0.02 2.10 16 28 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.08 1.43 8.09 -2.39 -0.02 1.41 16 30 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 2.23 8.12 -2.39 -0.02 2.21 16 33 H 0.06 2.34 6.71 -2.39 -0.02 2.32 16 34 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -60.71 261.59 2.48 -58.23 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 1.04 Total: 5.32 kcal Atomic # 6 Polarization: -38.61 SS G_CDS: 3.71 Total: -34.91 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: -4.29 Total: -75.06 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -60.71 2.48 -58.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259955983.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.155 kcal (2) G-P(sol) polarization free energy of solvation -60.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds