Wall clock time and date at job start Mon Mar 30 2020 01:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47365 * 2 1 4 4 C 1.50698 * 109.47002 * 120.00293 * 2 1 3 5 5 H 1.07997 * 119.99825 * 119.99788 * 4 2 1 6 6 C 1.37879 * 120.00158 * 299.99741 * 4 2 1 7 7 N 1.31511 * 119.99860 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99731 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47024 * 90.00456 * 8 6 4 10 10 H 1.48501 * 109.47026 * 209.99974 * 8 6 4 11 11 H 1.48493 * 109.47211 * 330.00023 * 8 6 4 12 12 C 1.53001 * 109.46646 * 240.00168 * 2 1 3 13 13 C 1.52999 * 109.47190 * 65.00507 * 12 2 1 14 14 N 1.46905 * 109.47022 * 179.97438 * 13 12 2 15 15 C 1.48560 * 110.99577 * 189.99713 * 14 13 12 16 16 C 1.54378 * 104.69549 * 200.89794 * 15 14 13 17 17 C 1.54571 * 104.91190 * 23.88545 * 16 15 14 18 18 C 1.48555 * 110.99889 * 74.58193 * 14 13 12 19 19 H 1.09001 * 109.46853 * 300.00013 * 1 2 3 20 20 H 1.08998 * 109.46911 * 59.99118 * 1 2 3 21 21 H 1.08994 * 109.47365 * 180.02562 * 1 2 3 22 22 H 0.97001 * 119.99579 * 179.97438 * 7 6 4 23 23 H 1.08998 * 109.47132 * 305.00178 * 12 2 1 24 24 H 1.09002 * 109.46531 * 184.99862 * 12 2 1 25 25 H 1.08998 * 109.47352 * 59.99805 * 13 12 2 26 26 H 1.08997 * 109.46721 * 299.99880 * 13 12 2 27 27 H 1.09002 * 110.41441 * 319.73871 * 15 14 13 28 28 H 1.09002 * 110.41248 * 82.06172 * 15 14 13 29 29 H 1.09006 * 110.32557 * 142.80924 * 16 15 14 30 30 H 1.08996 * 110.32821 * 265.02105 * 16 15 14 31 31 H 1.08995 * 110.29758 * 241.08109 * 17 16 15 32 32 H 1.09004 * 110.32005 * 118.89089 * 17 16 15 33 33 H 1.09005 * 110.41154 * 277.81401 * 18 14 13 34 34 H 1.08998 * 110.41848 * 40.13562 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1381 -0.8592 3.5565 8 14 0.6260 1.2798 2.6542 9 1 -0.8020 0.8745 2.6994 10 1 0.9773 1.9952 3.9071 11 1 0.8493 2.1773 1.4924 12 6 2.0399 -0.7212 -1.2493 13 6 1.6352 0.0690 -2.4953 14 7 2.1253 -0.6232 -3.6948 15 6 1.9643 0.2264 -4.9028 16 6 1.9934 -0.7652 -6.0857 17 6 1.5601 -2.1197 -5.4800 18 6 1.3076 -1.8290 -3.9850 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5140 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 1.9040 -0.5276 4.4375 23 1 1.6052 -1.7197 -1.2952 24 1 3.1262 -0.7994 -1.2056 25 1 2.0699 1.0675 -2.4494 26 1 0.5489 0.1473 -2.5389 27 1 1.0109 0.7540 -4.8723 28 1 2.7881 0.9359 -4.9812 29 1 1.2917 -0.4526 -6.8591 30 1 3.0012 -0.8374 -6.4945 31 1 2.3555 -2.8562 -5.5934 32 1 0.6456 -2.4723 -5.9569 33 1 1.6381 -2.6686 -3.3735 34 1 0.2517 -1.6239 -3.8088 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260067492.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:01 Heat of formation + Delta-G solvation = -9.352918 kcal Electronic energy + Delta-G solvation = -12789.743553 eV Core-core repulsion = 10721.988585 eV Total energy + Delta-G solvation = -2067.754969 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.74357 -35.47747 -32.46274 -31.01614 -28.78563 -27.21605 -25.15763 -22.83137 -20.81508 -20.66297 -18.95216 -16.64860 -15.89835 -15.66382 -14.59521 -14.28353 -13.87302 -13.00565 -12.89976 -12.73278 -12.22614 -12.03107 -11.80794 -11.41389 -11.27606 -11.09687 -10.86867 -10.59792 -10.46176 -10.04925 -9.98758 -9.61340 -9.16861 -8.91838 -8.49189 -8.20570 -6.01295 -3.99485 3.30844 3.40955 3.44082 4.23425 4.46441 4.72185 4.78676 5.01361 5.31920 5.34030 5.52452 5.62123 5.72890 5.77128 5.81285 5.82531 6.07344 6.12009 6.15430 6.20444 6.31587 6.39486 6.53788 6.77764 6.86847 6.91306 7.12257 7.33951 7.40246 7.61265 7.85285 8.60217 9.03667 9.61928 11.12312 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.071053 B = 0.007502 C = 0.007207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.975577 B = 3731.591599 C = 3884.081187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.007 3.993 3 H 0.025 0.975 4 C -0.510 4.510 5 H 0.073 0.927 6 C 0.066 3.934 7 N -0.904 5.904 8 Si 0.891 3.109 9 H -0.281 1.281 10 H -0.299 1.299 11 H -0.267 1.267 12 C -0.088 4.088 13 C 0.041 3.959 14 N -0.511 5.511 15 C 0.029 3.971 16 C -0.123 4.123 17 C -0.125 4.125 18 C 0.032 3.968 19 H 0.035 0.965 20 H 0.026 0.974 21 H 0.049 0.951 22 H 0.262 0.738 23 H 0.051 0.949 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.035 0.965 27 H 0.039 0.961 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.920 1.288 -16.510 16.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.012 4.012 3 H 0.043 0.957 4 C -0.548 4.548 5 H 0.091 0.909 6 C -0.134 4.134 7 N -0.543 5.543 8 Si 0.722 3.278 9 H -0.209 1.209 10 H -0.227 1.227 11 H -0.193 1.193 12 C -0.126 4.126 13 C -0.087 4.087 14 N -0.235 5.235 15 C -0.099 4.099 16 C -0.162 4.162 17 C -0.163 4.163 18 C -0.096 4.096 19 H 0.054 0.946 20 H 0.045 0.955 21 H 0.068 0.932 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.353 1.161 -16.201 16.412 hybrid contribution -1.555 1.033 0.211 1.878 sum -3.908 2.194 -15.990 16.606 Atomic orbital electron populations 1.22218 0.99810 1.00369 0.98067 1.19149 0.91374 0.96545 0.94158 0.95689 1.21074 1.31574 1.13383 0.88723 0.90888 1.25036 0.95829 0.96667 0.95908 1.69909 1.46017 1.40517 0.97868 0.86789 0.80448 0.83867 0.76660 1.20865 1.22699 1.19253 1.21406 1.01078 0.98183 0.91915 1.22529 0.97438 0.98134 0.90577 1.65417 1.50519 1.05379 1.02211 1.23098 1.00209 0.96079 0.90540 1.22330 1.01581 0.95067 0.97182 1.22355 1.01114 0.97527 0.95299 1.23124 0.95771 0.94972 0.95770 0.94634 0.95469 0.93197 0.92794 0.93021 0.91955 0.91417 0.94721 0.94300 0.90433 0.91791 0.91216 0.91165 0.91758 0.89928 0.94041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.43 37.16 0.31 -2.95 16 2 C 0.01 0.17 1.89 -91.77 -0.17 0.00 16 3 H 0.03 0.61 7.20 -51.93 -0.37 0.24 16 4 C -0.51 -14.64 9.14 -34.44 -0.31 -14.96 16 5 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 6 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 7 N -0.90 -28.28 13.96 55.43 0.77 -27.50 16 8 Si 0.89 22.61 24.37 -169.99 -4.14 18.47 16 9 H -0.28 -6.96 6.87 56.52 0.39 -6.58 16 10 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 11 H -0.27 -6.50 6.53 56.52 0.37 -6.13 16 12 C -0.09 -1.80 4.74 -26.73 -0.13 -1.93 16 13 C 0.04 0.70 4.58 -3.82 -0.02 0.69 16 14 N -0.51 -7.88 5.34 -229.97 -1.23 -9.11 16 15 C 0.03 0.37 6.45 -2.18 -0.01 0.35 16 16 C -0.12 -1.30 7.02 -25.18 -0.18 -1.47 16 17 C -0.12 -1.37 7.01 -25.18 -0.18 -1.55 16 18 C 0.03 0.44 5.91 -2.19 -0.01 0.42 16 19 H 0.04 0.82 3.27 -51.93 -0.17 0.65 16 20 H 0.03 0.51 6.56 -51.93 -0.34 0.17 16 21 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 22 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 23 H 0.05 1.06 7.47 -51.93 -0.39 0.67 16 24 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 25 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 26 H 0.03 0.59 6.19 -51.93 -0.32 0.26 16 27 H 0.04 0.48 8.00 -51.93 -0.42 0.06 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.18 7.85 -51.93 -0.41 0.78 16 34 H 0.04 0.57 7.75 -51.93 -0.40 0.17 16 LS Contribution 260.46 15.07 3.93 3.93 Total: -1.00 -30.41 260.46 -7.27 -37.68 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -5.80 Total: -3.93 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -0.80 Total: -19.54 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.45 Total: -36.61 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.14 Total: 18.47 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.41 -7.27 -37.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260067492.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.328 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds