Wall clock time and date at job start Mon Mar 30 2020 01:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47365 * 2 1 4 4 C 1.50698 * 109.47002 * 120.00293 * 2 1 3 5 5 H 1.07997 * 119.99825 * 119.99788 * 4 2 1 6 6 C 1.37879 * 120.00158 * 299.99741 * 4 2 1 7 7 N 1.31511 * 119.99860 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99731 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47024 * 90.00456 * 8 6 4 10 10 H 1.48501 * 109.47026 * 209.99974 * 8 6 4 11 11 H 1.48493 * 109.47211 * 330.00023 * 8 6 4 12 12 C 1.53001 * 109.46646 * 240.00168 * 2 1 3 13 13 C 1.52999 * 109.47190 * 65.00507 * 12 2 1 14 14 N 1.46905 * 109.47022 * 179.97438 * 13 12 2 15 15 C 1.48560 * 110.99577 * 189.99713 * 14 13 12 16 16 C 1.54378 * 104.69549 * 200.89794 * 15 14 13 17 17 C 1.54571 * 104.91190 * 23.88545 * 16 15 14 18 18 C 1.48555 * 110.99889 * 74.58193 * 14 13 12 19 19 H 1.09001 * 109.46853 * 300.00013 * 1 2 3 20 20 H 1.08998 * 109.46911 * 59.99118 * 1 2 3 21 21 H 1.08994 * 109.47365 * 180.02562 * 1 2 3 22 22 H 0.97001 * 119.99579 * 179.97438 * 7 6 4 23 23 H 1.08998 * 109.47132 * 305.00178 * 12 2 1 24 24 H 1.09002 * 109.46531 * 184.99862 * 12 2 1 25 25 H 1.08998 * 109.47352 * 59.99805 * 13 12 2 26 26 H 1.08997 * 109.46721 * 299.99880 * 13 12 2 27 27 H 1.09002 * 110.41441 * 319.73871 * 15 14 13 28 28 H 1.09002 * 110.41248 * 82.06172 * 15 14 13 29 29 H 1.09006 * 110.32557 * 142.80924 * 16 15 14 30 30 H 1.08996 * 110.32821 * 265.02105 * 16 15 14 31 31 H 1.08995 * 110.29758 * 241.08109 * 17 16 15 32 32 H 1.09004 * 110.32005 * 118.89089 * 17 16 15 33 33 H 1.09005 * 110.41154 * 277.81401 * 18 14 13 34 34 H 1.08998 * 110.41848 * 40.13562 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1381 -0.8592 3.5565 8 14 0.6260 1.2798 2.6542 9 1 -0.8020 0.8745 2.6994 10 1 0.9773 1.9952 3.9071 11 1 0.8493 2.1773 1.4924 12 6 2.0399 -0.7212 -1.2493 13 6 1.6352 0.0690 -2.4953 14 7 2.1253 -0.6232 -3.6948 15 6 1.9643 0.2264 -4.9028 16 6 1.9934 -0.7652 -6.0857 17 6 1.5601 -2.1197 -5.4800 18 6 1.3076 -1.8290 -3.9850 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5140 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 1.9040 -0.5276 4.4375 23 1 1.6052 -1.7197 -1.2952 24 1 3.1262 -0.7994 -1.2056 25 1 2.0699 1.0675 -2.4494 26 1 0.5489 0.1473 -2.5389 27 1 1.0109 0.7540 -4.8723 28 1 2.7881 0.9359 -4.9812 29 1 1.2917 -0.4526 -6.8591 30 1 3.0012 -0.8374 -6.4945 31 1 2.3555 -2.8562 -5.5934 32 1 0.6456 -2.4723 -5.9569 33 1 1.6381 -2.6686 -3.3735 34 1 0.2517 -1.6239 -3.8088 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260067492.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:01 Heat of formation + Delta-G solvation = -30.103084 kcal Electronic energy + Delta-G solvation = -12790.643348 eV Core-core repulsion = 10721.988585 eV Total energy + Delta-G solvation = -2068.654763 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.85746 -37.22678 -34.31785 -32.60022 -29.77021 -28.70010 -27.20207 -24.33887 -21.94991 -21.76638 -20.64633 -18.78064 -17.18179 -16.83164 -16.30030 -15.78585 -15.18719 -14.86644 -14.32615 -14.10168 -14.00320 -13.36666 -13.19166 -12.87368 -12.71663 -12.26377 -12.17132 -12.02599 -11.96377 -11.74838 -11.37904 -11.30218 -11.09782 -10.93785 -10.70146 -9.37201 -8.29184 -6.32884 1.30404 1.36140 1.47549 2.33448 3.06678 3.11361 3.78042 3.83180 4.11243 4.21125 4.34722 4.39281 4.45749 4.60756 4.69884 4.74322 4.77773 4.83147 4.92662 5.01136 5.05520 5.11492 5.13105 5.18293 5.24645 5.33694 5.57319 5.70658 5.75567 6.01863 6.12354 6.34328 6.74867 7.32501 8.88209 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.071053 B = 0.007502 C = 0.007207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.975577 B = 3731.591599 C = 3884.081187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.006 3.994 3 H 0.025 0.975 4 C -0.520 4.520 5 H 0.028 0.972 6 C 0.006 3.994 7 N -0.954 5.954 8 Si 0.957 3.043 9 H -0.267 1.267 10 H -0.300 1.300 11 H -0.245 1.245 12 C -0.078 4.078 13 C 0.053 3.947 14 N -0.531 5.531 15 C 0.026 3.974 16 C -0.118 4.118 17 C -0.120 4.120 18 C 0.026 3.974 19 H 0.027 0.973 20 H 0.064 0.936 21 H 0.046 0.954 22 H 0.265 0.735 23 H 0.044 0.956 24 H 0.041 0.959 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.453 2.797 -18.752 19.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.014 4.014 3 H 0.043 0.957 4 C -0.558 4.558 5 H 0.047 0.953 6 C -0.190 4.190 7 N -0.595 5.595 8 Si 0.784 3.216 9 H -0.193 1.193 10 H -0.228 1.228 11 H -0.169 1.169 12 C -0.116 4.116 13 C -0.075 4.075 14 N -0.255 5.255 15 C -0.102 4.102 16 C -0.156 4.156 17 C -0.158 4.158 18 C -0.102 4.102 19 H 0.045 0.955 20 H 0.083 0.917 21 H 0.066 0.934 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.885 2.665 -18.478 19.069 hybrid contribution -0.985 0.460 0.896 1.409 sum -4.869 3.125 -17.582 18.510 Atomic orbital electron populations 1.22116 0.97721 1.00767 0.99442 1.19123 0.93044 0.95985 0.93216 0.95675 1.21426 1.30802 1.12327 0.91205 0.95349 1.25962 0.97436 1.00237 0.95365 1.70068 1.48016 1.42771 0.98607 0.85725 0.78867 0.79820 0.77230 1.19340 1.22757 1.16909 1.21213 0.99564 0.98143 0.92693 1.22279 0.97852 0.97556 0.89815 1.65339 1.51137 1.06357 1.02695 1.23198 1.00713 0.96354 0.89922 1.22341 1.02606 0.93922 0.96748 1.22353 1.02177 0.98042 0.93271 1.23182 0.95495 0.93890 0.97637 0.95460 0.91694 0.93440 0.92621 0.93750 0.94015 0.91082 0.93820 0.93620 0.90107 0.89607 0.90687 0.91028 0.89852 0.91514 0.93897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.98 8.43 71.98 0.61 -5.38 16 2 C 0.01 0.27 1.89 -11.54 -0.02 0.25 16 3 H 0.03 1.19 7.20 -2.39 -0.02 1.17 16 4 C -0.52 -30.64 9.14 25.60 0.23 -30.41 16 5 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 6 C 0.01 0.37 5.45 84.66 0.46 0.83 16 7 N -0.95 -61.35 13.96 21.45 0.30 -61.05 16 8 Si 0.96 46.04 24.37 68.60 1.67 47.71 16 9 H -0.27 -12.20 6.87 99.48 0.68 -11.52 16 10 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 11 H -0.25 -10.85 6.53 99.48 0.65 -10.20 16 12 C -0.08 -3.20 4.74 30.59 0.14 -3.05 16 13 C 0.05 1.72 4.58 86.30 0.40 2.12 16 14 N -0.53 -15.43 5.34 -881.50 -4.71 -20.14 16 15 C 0.03 0.58 6.45 86.45 0.56 1.13 16 16 C -0.12 -2.08 7.02 31.60 0.22 -1.86 16 17 C -0.12 -2.31 7.01 31.60 0.22 -2.09 16 18 C 0.03 0.67 5.91 86.45 0.51 1.18 16 19 H 0.03 1.17 3.27 -2.39 -0.01 1.17 16 20 H 0.06 2.21 6.56 -2.39 -0.02 2.20 16 21 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 22 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 23 H 0.04 1.84 7.47 -2.39 -0.02 1.83 16 24 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.07 2.25 8.08 -2.39 -0.02 2.23 16 26 H 0.04 1.34 6.19 -2.39 -0.01 1.32 16 27 H 0.05 0.97 8.00 -2.39 -0.02 0.95 16 28 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.07 1.90 7.85 -2.38 -0.02 1.88 16 34 H 0.04 1.09 7.75 -2.39 -0.02 1.07 16 Total: -1.00 -66.40 260.46 1.56 -64.84 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 0.96 Total: 5.91 kcal Atomic # 6 Polarization: -40.61 SS G_CDS: 3.33 Total: -37.28 kcal Atomic # 7 Polarization: -76.78 SS G_CDS: -4.41 Total: -81.19 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.67 Total: 47.71 kcal Total: -66.40 1.56 -64.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260067492.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.740 kcal (2) G-P(sol) polarization free energy of solvation -66.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds