Wall clock time and date at job start Mon Mar 30 2020 01:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47096 * 2 1 4 4 C 1.50708 * 109.47079 * 240.00530 * 2 1 3 5 5 H 1.08001 * 119.99634 * 240.00010 * 4 2 1 6 6 C 1.37874 * 120.00222 * 59.99580 * 4 2 1 7 7 N 1.31513 * 119.99831 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00113 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46846 * 60.00272 * 8 6 4 10 10 H 1.48496 * 109.47199 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47255 * 300.00278 * 8 6 4 12 12 C 1.52996 * 109.47531 * 120.00286 * 2 1 3 13 13 C 1.53002 * 109.46891 * 295.00265 * 12 2 1 14 14 N 1.46906 * 109.47053 * 179.97438 * 13 12 2 15 15 C 1.48539 * 110.99911 * 52.60113 * 14 13 12 16 16 C 1.54934 * 103.22340 * 159.72267 * 15 14 13 17 17 C 1.54597 * 102.92270 * 322.58191 * 16 15 14 18 18 C 1.47897 * 110.99785 * 169.99856 * 14 13 12 19 19 H 1.08992 * 109.47256 * 59.99826 * 1 2 3 20 20 H 1.08997 * 109.46651 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.46762 * 299.99422 * 1 2 3 22 22 H 0.97000 * 119.99842 * 179.97438 * 7 6 4 23 23 H 1.09001 * 109.47372 * 175.00229 * 12 2 1 24 24 H 1.09004 * 109.47108 * 54.99973 * 12 2 1 25 25 H 1.08992 * 109.47056 * 59.99654 * 13 12 2 26 26 H 1.09004 * 109.47006 * 299.99770 * 13 12 2 27 27 H 1.08998 * 110.66256 * 278.15595 * 15 14 13 28 28 H 1.08992 * 110.66782 * 41.28665 * 15 14 13 29 29 H 1.09000 * 110.72116 * 204.22504 * 16 15 14 30 30 H 1.08998 * 110.72349 * 80.94448 * 16 15 14 31 31 H 1.08995 * 110.31419 * 263.04374 * 17 16 15 32 32 H 1.09001 * 110.30625 * 140.87611 * 17 16 15 33 33 H 1.08997 * 109.92311 * 333.50472 * 18 14 13 34 34 H 1.08994 * 109.92026 * 94.60477 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8257 -2.5200 -4.0078 10 1 1.8258 -0.4204 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 6 2.0401 -0.7213 1.2491 13 6 1.6353 0.0688 2.4953 14 7 2.1246 -0.6240 3.6947 15 6 3.5789 -0.9075 3.5897 16 6 4.0047 -1.1254 5.0634 17 6 3.1535 -0.0849 5.8268 18 6 1.9643 0.2215 4.8976 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 0.7095 1.1619 -3.4844 23 1 3.1264 -0.7994 1.2055 24 1 1.6055 -1.7199 1.2950 25 1 0.5491 0.1470 2.5389 26 1 2.0699 1.0674 2.4494 27 1 3.7537 -1.8083 3.0015 28 1 4.1065 -0.0568 3.1586 29 1 5.0680 -0.9227 5.1915 30 1 3.7618 -2.1367 5.3895 31 1 3.7345 0.8192 6.0084 32 1 2.7995 -0.5037 6.7688 33 1 1.9752 1.2743 4.6156 34 1 1.0265 -0.0189 5.3982 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260067496.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:03 Heat of formation + Delta-G solvation = -34.430851 kcal Electronic energy + Delta-G solvation = -12758.919656 eV Core-core repulsion = 10690.077227 eV Total energy + Delta-G solvation = -2068.842429 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.93061 -37.04822 -34.24471 -32.17279 -29.86754 -28.15086 -27.30413 -24.44078 -22.05852 -21.66211 -20.62963 -18.36860 -16.91990 -16.82193 -16.36696 -15.82801 -14.88507 -14.73197 -14.40200 -13.98344 -13.39229 -13.28375 -13.08511 -12.80404 -12.50059 -12.25304 -12.24308 -12.10277 -12.00901 -11.96129 -11.45137 -11.35067 -11.05596 -10.75877 -10.42968 -9.35231 -8.08703 -6.23223 1.41173 1.42951 1.50617 2.43294 3.11810 3.18317 3.77340 3.83461 4.10661 4.26967 4.36072 4.39444 4.64032 4.68338 4.74174 4.83854 4.89842 4.95545 5.00519 5.06455 5.10951 5.19716 5.27020 5.31008 5.36382 5.47927 5.61321 5.95567 6.02274 6.07995 6.20424 6.39419 6.88605 7.45172 8.96019 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.065193 B = 0.007255 C = 0.006735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.387682 B = 3858.594432 C = 4156.683747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.039 3.961 3 H -0.007 1.007 4 C -0.535 4.535 5 H 0.051 0.949 6 C 0.010 3.990 7 N -0.919 5.919 8 Si 0.955 3.045 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.271 1.271 12 C -0.088 4.088 13 C 0.058 3.942 14 N -0.531 5.531 15 C 0.028 3.972 16 C -0.118 4.118 17 C -0.124 4.124 18 C 0.027 3.973 19 H 0.051 0.949 20 H 0.024 0.976 21 H 0.031 0.969 22 H 0.261 0.739 23 H 0.044 0.956 24 H 0.048 0.952 25 H 0.071 0.929 26 H 0.022 0.978 27 H 0.073 0.927 28 H 0.035 0.965 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.038 0.962 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.131 -1.888 13.830 14.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.020 3.980 3 H 0.011 0.989 4 C -0.573 4.573 5 H 0.069 0.931 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.781 3.219 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.196 1.196 12 C -0.126 4.126 13 C -0.070 4.070 14 N -0.255 5.255 15 C -0.100 4.100 16 C -0.156 4.156 17 C -0.162 4.162 18 C -0.101 4.101 19 H 0.070 0.930 20 H 0.043 0.957 21 H 0.050 0.950 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.040 0.960 27 H 0.091 0.909 28 H 0.053 0.947 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.056 0.944 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.736 -2.246 13.742 14.417 hybrid contribution 0.489 0.609 -1.341 1.552 sum 4.225 -1.636 12.401 13.203 Atomic orbital electron populations 1.21665 0.98362 0.98697 0.99608 1.18631 0.93102 0.94142 0.92171 0.98862 1.21556 1.31190 1.12459 0.92116 0.93053 1.25779 0.95305 0.95746 1.02017 1.70023 1.37744 1.24187 1.23955 0.85655 0.78809 0.78798 0.78668 1.19609 1.20823 1.19616 1.21478 0.99230 0.98600 0.93307 1.22253 1.00231 0.94654 0.89823 1.64826 1.16132 1.41830 1.02761 1.23274 0.87931 1.00262 0.98495 1.22492 1.00179 1.00115 0.92773 1.22394 0.95533 0.99551 0.98734 1.22992 1.00434 0.95175 0.91484 0.92966 0.95659 0.94967 0.93024 0.93689 0.93285 0.91081 0.95999 0.90859 0.94712 0.89547 0.90430 0.90650 0.89449 0.94389 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.31 8.73 71.98 0.63 -5.68 16 2 C 0.04 2.01 2.30 -11.54 -0.03 1.99 16 3 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 4 C -0.54 -30.51 8.56 25.60 0.22 -30.29 16 5 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 6 C 0.01 0.56 5.30 84.65 0.45 1.01 16 7 N -0.92 -54.56 11.32 21.45 0.24 -54.32 16 8 Si 0.96 44.48 29.54 68.60 2.03 46.50 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 12 C -0.09 -3.83 4.28 30.59 0.13 -3.70 16 13 C 0.06 2.17 4.78 86.30 0.41 2.58 16 14 N -0.53 -16.82 5.40 -883.02 -4.76 -21.58 16 15 C 0.03 0.80 5.10 86.65 0.44 1.25 16 16 C -0.12 -2.45 7.06 31.80 0.22 -2.23 16 17 C -0.12 -2.40 6.93 31.48 0.22 -2.18 16 18 C 0.03 0.68 6.70 86.45 0.58 1.26 16 19 H 0.05 2.90 6.07 -2.39 -0.01 2.89 16 20 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 21 H 0.03 1.41 6.56 -2.39 -0.02 1.39 16 22 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 23 H 0.04 1.93 6.80 -2.39 -0.02 1.91 16 24 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 25 H 0.07 2.66 6.56 -2.39 -0.02 2.64 16 26 H 0.02 0.83 7.81 -2.38 -0.02 0.81 16 27 H 0.07 2.20 7.66 -2.39 -0.02 2.19 16 28 H 0.03 1.05 8.00 -2.39 -0.02 1.03 16 29 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.04 0.98 7.57 -2.39 -0.02 0.96 16 34 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -61.39 265.54 1.82 -59.57 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 1.04 Total: 5.83 kcal Atomic # 6 Polarization: -39.28 SS G_CDS: 3.28 Total: -36.01 kcal Atomic # 7 Polarization: -71.38 SS G_CDS: -4.52 Total: -75.90 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -61.39 1.82 -59.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260067496.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.142 kcal (2) G-P(sol) polarization free energy of solvation -61.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds