Wall clock time and date at job start Mon Mar 30 2020 02:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46898 * 109.47245 * 2 1 4 4 C 1.46898 * 111.00219 * 293.95364 * 3 2 1 5 5 C 1.46899 * 110.99657 * 170.00046 * 3 2 1 6 6 H 1.09004 * 110.81772 * 56.67102 * 5 3 2 7 7 C 1.54882 * 110.75970 * 293.32986 * 5 3 2 8 8 C 1.54268 * 104.19992 * 203.74434 * 7 5 3 9 9 C 1.53876 * 106.59607 * 23.60931 * 8 7 5 10 10 H 1.08998 * 110.03805 * 240.71854 * 9 8 7 11 11 C 1.50704 * 110.07526 * 119.30871 * 9 8 7 12 12 H 1.08000 * 119.99871 * 242.81076 * 11 9 8 13 13 C 1.37869 * 119.99922 * 62.80716 * 11 9 8 14 14 N 1.31516 * 120.00039 * 0.02562 * 13 11 9 15 15 Si 1.86804 * 119.99878 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47060 * 90.00214 * 15 13 11 17 17 H 1.48498 * 109.47157 * 209.99700 * 15 13 11 18 18 H 1.48492 * 109.47329 * 330.00147 * 15 13 11 19 19 C 1.54268 * 106.59992 * 0.02562 * 9 8 7 20 20 H 1.09002 * 109.47400 * 59.99490 * 1 2 3 21 21 H 1.09003 * 109.47403 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47258 * 299.99589 * 1 2 3 23 23 H 1.09005 * 109.47014 * 239.99951 * 2 1 3 24 24 H 1.09002 * 109.47400 * 120.00509 * 2 1 3 25 25 H 1.08995 * 109.47427 * 296.04867 * 4 3 2 26 26 H 1.09004 * 109.46734 * 56.04860 * 4 3 2 27 27 H 1.08996 * 109.47480 * 176.04608 * 4 3 2 28 28 H 1.09003 * 110.48391 * 322.42181 * 7 5 3 29 29 H 1.09004 * 110.48801 * 85.06723 * 7 5 3 30 30 H 1.08994 * 110.03288 * 264.32894 * 8 7 5 31 31 H 1.08998 * 110.03249 * 142.88896 * 8 7 5 32 32 H 0.97008 * 119.99639 * 179.97438 * 14 13 11 33 33 H 1.08999 * 110.49069 * 217.71506 * 19 9 8 34 34 H 1.08996 * 110.48777 * 95.06810 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0669 -1.2533 5 6 3.4685 1.4310 0.2381 6 1 4.0019 0.8352 -0.5026 7 6 3.8045 0.9528 1.6725 8 6 5.1670 1.6076 1.9802 9 6 5.2778 2.8415 1.0674 10 1 6.1392 2.7415 0.4071 11 6 5.4085 4.0908 1.9001 12 1 4.6466 4.8546 1.8510 13 6 6.5007 4.2586 2.7245 14 7 7.4288 3.3286 2.7840 15 14 6.6624 5.8069 3.7572 16 1 6.0127 5.5928 5.0753 17 1 8.1000 6.1194 3.9589 18 1 6.0029 6.9390 3.0584 19 6 3.9785 2.8938 0.2374 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 2.1769 1.5791 -2.0859 26 1 0.5919 2.0179 -1.4051 27 1 1.9824 3.1098 -1.1988 28 1 3.0476 1.2981 2.3768 29 1 3.8879 -0.1336 1.7028 30 1 5.9747 0.9088 1.7628 31 1 5.2073 1.9121 3.0260 32 1 8.1974 3.4469 3.3638 33 1 4.1886 3.2236 -0.7800 34 1 3.2501 3.5526 0.7102 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260249367.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:30 Heat of formation + Delta-G solvation = -15.767724 kcal Electronic energy + Delta-G solvation = -13022.575816 eV Core-core repulsion = 10954.542681 eV Total energy + Delta-G solvation = -2068.033135 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.36455 -35.37095 -32.24553 -30.31931 -28.36920 -26.67755 -25.44693 -23.28794 -21.21917 -19.18321 -18.73779 -16.31287 -15.45221 -14.87407 -14.55300 -14.39197 -13.94460 -13.03888 -12.63615 -12.31533 -11.97008 -11.75460 -11.56924 -11.33802 -10.97813 -10.86855 -10.60166 -10.43561 -10.09435 -9.90473 -9.80309 -9.52662 -9.07219 -8.60893 -8.29043 -7.91803 -5.93642 -3.95937 3.35276 3.41720 3.45248 4.31293 4.50891 5.17892 5.34303 5.39142 5.45233 5.64147 5.68387 5.78141 5.85651 5.92970 6.01169 6.09812 6.18943 6.32233 6.42208 6.60546 6.68528 6.86327 6.88786 7.10119 7.27587 7.41932 7.52635 7.66159 7.81083 8.00845 8.07854 8.56412 9.07650 9.67405 11.15902 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.062318 B = 0.008288 C = 0.007968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.204032 B = 3377.545032 C = 3513.118000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.048 3.952 3 N -0.534 5.534 4 C 0.023 3.977 5 C 0.074 3.926 6 H 0.036 0.964 7 C -0.113 4.113 8 C -0.091 4.091 9 C 0.045 3.955 10 H 0.025 0.975 11 C -0.508 4.508 12 H 0.055 0.945 13 C 0.059 3.941 14 N -0.891 5.891 15 Si 0.888 3.112 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.275 1.275 19 C -0.103 4.103 20 H 0.051 0.949 21 H 0.052 0.948 22 H 0.062 0.938 23 H 0.024 0.976 24 H 0.074 0.926 25 H 0.017 0.983 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.039 0.961 30 H 0.035 0.965 31 H 0.063 0.937 32 H 0.258 0.742 33 H 0.039 0.961 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.623 -5.256 -5.061 12.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 N -0.259 5.259 4 C -0.125 4.125 5 C -0.034 4.034 6 H 0.054 0.946 7 C -0.151 4.151 8 C -0.129 4.129 9 C 0.026 3.974 10 H 0.043 0.957 11 C -0.546 4.546 12 H 0.073 0.927 13 C -0.142 4.142 14 N -0.530 5.530 15 Si 0.716 3.284 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.200 1.200 19 C -0.141 4.141 20 H 0.070 0.930 21 H 0.071 0.929 22 H 0.081 0.919 23 H 0.043 0.957 24 H 0.093 0.907 25 H 0.036 0.964 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.677 -5.048 -4.592 11.841 hybrid contribution 0.620 0.327 -0.080 0.706 sum -9.057 -4.721 -4.672 11.231 Atomic orbital electron populations 1.21799 0.95501 1.00895 1.02260 1.22067 0.95476 0.89997 1.00470 1.62148 1.15084 1.14734 1.33902 1.22387 1.00263 0.99900 0.89944 1.22792 0.84873 0.98757 0.96956 0.94636 1.22449 0.99795 0.97687 0.95140 1.22027 0.92025 0.96983 1.01906 1.19219 0.91278 0.93855 0.93003 0.95731 1.21268 1.06113 1.03374 1.23871 0.92701 1.24987 0.95864 0.96280 0.97070 1.69993 1.10644 1.33462 1.38926 0.86661 0.77041 0.83888 0.80802 1.20758 1.21374 1.19980 1.22531 0.99566 0.93124 0.98855 0.92961 0.92865 0.91928 0.95728 0.90742 0.96431 0.92003 0.91000 0.91699 0.94185 0.94591 0.91775 0.93199 0.94266 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.84 37.16 0.37 -1.34 16 2 C 0.05 0.67 5.58 -3.83 -0.02 0.65 16 3 N -0.53 -8.82 4.66 -232.48 -1.08 -9.91 16 4 C 0.02 0.34 9.08 60.06 0.55 0.88 16 5 C 0.07 1.40 2.59 -65.71 -0.17 1.23 16 6 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 7 C -0.11 -2.25 5.49 -25.07 -0.14 -2.39 16 8 C -0.09 -2.18 5.61 -25.61 -0.14 -2.32 16 9 C 0.05 1.16 2.82 -90.65 -0.26 0.90 16 10 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 11 C -0.51 -14.22 8.32 -34.44 -0.29 -14.51 16 12 H 0.05 1.52 7.54 -52.49 -0.40 1.13 16 13 C 0.06 1.67 5.09 -17.82 -0.09 1.58 16 14 N -0.89 -26.11 12.45 55.43 0.69 -25.42 16 15 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 C -0.10 -2.21 4.50 -25.05 -0.11 -2.32 16 20 H 0.05 0.57 6.47 -51.93 -0.34 0.24 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.02 0.34 8.12 -51.93 -0.42 -0.09 16 24 H 0.07 1.06 6.85 -51.93 -0.36 0.71 16 25 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.77 6.30 -51.93 -0.33 0.45 16 27 H 0.07 1.08 6.93 -51.93 -0.36 0.72 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 29 H 0.04 0.72 7.75 -51.93 -0.40 0.31 16 30 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.70 7.26 -51.93 -0.38 1.32 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.04 0.79 7.98 -51.93 -0.41 0.38 16 34 H 0.07 1.48 7.67 -51.93 -0.40 1.08 16 LS Contribution 265.06 15.07 3.99 3.99 Total: -1.00 -28.67 265.06 -7.61 -36.27 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -5.88 Total: -3.96 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -0.31 Total: -17.63 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: -0.39 Total: -35.33 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.67 -7.61 -36.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260249367.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.507 kcal (2) G-P(sol) polarization free energy of solvation -28.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds