Wall clock time and date at job start Mon Mar 30 2020 02:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46898 * 109.46619 * 2 1 4 4 C 1.46901 * 111.00443 * 66.04574 * 3 2 1 5 5 C 1.46906 * 110.99820 * 189.99887 * 3 2 1 6 6 H 1.09000 * 110.01534 * 300.05785 * 5 3 2 7 7 C 1.53871 * 110.03080 * 61.45039 * 5 3 2 8 8 C 1.54273 * 106.59538 * 119.28596 * 7 5 3 9 9 C 1.54884 * 104.19508 * 23.61209 * 8 7 5 10 10 H 1.09001 * 110.76072 * 80.37490 * 9 8 7 11 11 C 1.50706 * 110.75344 * 203.55921 * 9 8 7 12 12 H 1.08001 * 120.00163 * 118.54638 * 11 9 8 13 13 C 1.37881 * 119.99694 * 298.54352 * 11 9 8 14 14 N 1.31506 * 120.00252 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 119.99796 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47023 * 89.99903 * 15 13 11 17 17 H 1.48498 * 109.47170 * 210.00081 * 15 13 11 18 18 H 1.48500 * 109.47305 * 330.00197 * 15 13 11 19 19 C 1.54266 * 110.03337 * 178.62087 * 5 3 2 20 20 H 1.08994 * 109.47270 * 300.00135 * 1 2 3 21 21 H 1.08999 * 109.47017 * 60.00257 * 1 2 3 22 22 H 1.09007 * 109.46731 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47270 * 239.99865 * 2 1 3 24 24 H 1.08999 * 109.47017 * 119.99742 * 2 1 3 25 25 H 1.09002 * 109.47401 * 183.95136 * 4 3 2 26 26 H 1.09001 * 109.46874 * 63.95149 * 4 3 2 27 27 H 1.09004 * 109.46970 * 303.95282 * 4 3 2 28 28 H 1.08998 * 110.03350 * 238.56886 * 7 5 3 29 29 H 1.08997 * 110.03369 * 359.95598 * 7 5 3 30 30 H 1.09006 * 110.48264 * 142.29022 * 8 7 5 31 31 H 1.08997 * 110.48474 * 264.92908 * 8 7 5 32 32 H 0.96995 * 120.00396 * 180.02562 * 14 13 11 33 33 H 1.09007 * 110.48608 * 335.78049 * 19 5 3 34 34 H 1.08999 * 110.48828 * 98.42480 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0670 1.2533 5 6 3.4685 1.4312 -0.2381 6 1 3.9926 0.8798 0.5425 7 6 3.7953 0.8319 -1.6171 8 6 4.4668 1.9531 -2.4369 9 6 5.0442 2.9124 -1.3668 10 1 5.9895 2.5335 -0.9780 11 6 5.2185 4.2990 -1.9308 12 1 4.6773 5.1288 -1.5008 13 6 6.0688 4.5081 -2.9958 14 7 6.7275 3.4976 -3.5197 15 14 6.2854 6.2269 -3.6946 16 1 7.4000 6.9106 -2.9907 17 1 6.5964 6.1366 -5.1438 18 1 5.0318 7.0001 -3.5046 19 6 3.9527 2.8956 -0.2680 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 1.9822 3.1100 1.1987 26 1 2.1769 1.5792 2.0859 27 1 0.5918 2.0179 1.4052 28 1 4.4788 -0.0099 -1.5059 29 1 2.8790 0.5060 -2.1093 30 1 5.2665 1.5464 -3.0560 31 1 3.7302 2.4682 -3.0535 32 1 7.3260 3.6447 -4.2687 33 1 3.1330 3.5631 -0.5343 34 1 4.3771 3.1768 0.6958 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260249370.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:32 Heat of formation + Delta-G solvation = -30.210922 kcal Electronic energy + Delta-G solvation = -13043.012292 eV Core-core repulsion = 10974.352853 eV Total energy + Delta-G solvation = -2068.659440 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.95574 -36.84528 -34.25419 -31.54049 -30.24137 -28.25701 -27.03643 -25.00205 -22.48302 -20.97890 -20.28698 -18.43777 -17.04902 -16.64621 -16.17865 -15.65411 -15.33068 -14.47781 -14.16747 -13.96422 -13.57970 -13.04326 -12.96057 -12.76033 -12.67585 -12.64342 -12.31988 -11.97473 -11.64619 -11.55136 -11.44488 -11.30547 -10.97849 -10.76680 -10.43416 -9.15506 -8.09644 -6.19463 1.41571 1.42284 1.52876 2.44869 3.06938 3.20539 3.94399 4.04370 4.19168 4.31887 4.38360 4.60138 4.63962 4.68358 4.77342 4.83747 4.94967 4.98070 5.03876 5.13714 5.17226 5.20952 5.30743 5.36809 5.45393 5.51786 5.67901 5.92624 6.03046 6.29887 6.32546 6.42154 6.90381 7.47568 8.99047 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.061982 B = 0.008389 C = 0.007961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.637673 B = 3336.945819 C = 3516.454571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.042 3.958 3 N -0.548 5.548 4 C 0.023 3.977 5 C 0.090 3.910 6 H 0.035 0.965 7 C -0.110 4.110 8 C -0.087 4.087 9 C 0.039 3.961 10 H -0.002 1.002 11 C -0.531 4.531 12 H 0.051 0.949 13 C 0.011 3.989 14 N -0.920 5.920 15 Si 0.954 3.046 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.269 1.269 19 C -0.095 4.095 20 H 0.059 0.941 21 H 0.053 0.947 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.033 0.967 25 H 0.060 0.940 26 H 0.025 0.975 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.027 0.973 32 H 0.260 0.740 33 H 0.057 0.943 34 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.782 -5.829 6.902 13.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.085 4.085 3 N -0.273 5.273 4 C -0.125 4.125 5 C -0.018 4.018 6 H 0.053 0.947 7 C -0.148 4.148 8 C -0.126 4.126 9 C 0.020 3.980 10 H 0.016 0.984 11 C -0.570 4.570 12 H 0.069 0.931 13 C -0.187 4.187 14 N -0.559 5.559 15 Si 0.779 3.221 16 H -0.200 1.200 17 H -0.209 1.209 18 H -0.193 1.193 19 C -0.133 4.133 20 H 0.078 0.922 21 H 0.072 0.928 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.051 0.949 25 H 0.079 0.921 26 H 0.043 0.957 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.902 -5.635 6.389 13.062 hybrid contribution 0.985 0.481 0.055 1.098 sum -8.917 -5.154 6.444 12.149 Atomic orbital electron populations 1.21755 0.93544 1.02299 1.02212 1.22208 0.97068 0.88494 1.00739 1.62169 1.13111 1.16664 1.35361 1.22427 1.01801 0.99103 0.89149 1.22189 0.87135 0.96344 0.96176 0.94696 1.22234 0.99776 0.97591 0.95214 1.22005 0.97191 0.95579 0.97814 1.19547 0.92251 0.94083 0.92096 0.98405 1.21500 1.25287 0.94609 1.15563 0.93081 1.25766 0.95389 1.00452 0.97128 1.70086 1.28850 1.32042 1.24968 0.85626 0.78548 0.80438 0.77476 1.20045 1.20874 1.19321 1.22339 0.98150 0.94861 0.97990 0.92188 0.92787 0.90769 0.90971 0.94890 0.92102 0.95662 0.89771 0.92371 0.91060 0.94272 0.95365 0.93129 0.92412 0.93432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.84 71.98 0.71 -2.15 16 2 C 0.04 1.08 5.44 86.30 0.47 1.55 16 3 N -0.55 -17.12 4.53 -892.77 -4.04 -21.17 16 4 C 0.02 0.62 9.07 127.69 1.16 1.78 16 5 C 0.09 3.29 2.67 45.64 0.12 3.41 16 6 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 7 C -0.11 -4.28 5.82 31.32 0.18 -4.10 16 8 C -0.09 -4.32 5.57 31.67 0.18 -4.14 16 9 C 0.04 2.04 2.81 -10.25 -0.03 2.01 16 10 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 11 C -0.53 -30.43 8.55 25.60 0.22 -30.21 16 12 H 0.05 2.88 7.79 -2.91 -0.02 2.85 16 13 C 0.01 0.64 5.33 84.66 0.45 1.09 16 14 N -0.92 -54.88 12.01 21.45 0.26 -54.62 16 15 Si 0.95 44.77 29.54 68.60 2.03 46.79 16 16 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 17 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 19 C -0.10 -4.09 4.61 31.67 0.15 -3.95 16 20 H 0.06 1.12 6.47 -2.39 -0.02 1.11 16 21 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 22 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 23 H 0.07 1.89 6.19 -2.39 -0.01 1.87 16 24 H 0.03 0.79 8.12 -2.39 -0.02 0.77 16 25 H 0.06 1.75 6.75 -2.39 -0.02 1.74 16 26 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.08 1.87 6.30 -2.38 -0.02 1.86 16 28 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.07 2.56 6.56 -2.39 -0.02 2.55 16 30 H 0.04 2.10 7.37 -2.38 -0.02 2.08 16 31 H 0.03 1.45 8.04 -2.39 -0.02 1.43 16 32 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 33 H 0.06 2.56 7.46 -2.38 -0.02 2.54 16 34 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -61.48 263.47 2.89 -58.60 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: 1.04 Total: 5.12 kcal Atomic # 6 Polarization: -38.32 SS G_CDS: 3.60 Total: -34.72 kcal Atomic # 7 Polarization: -72.00 SS G_CDS: -3.79 Total: -75.79 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -61.48 2.89 -58.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260249370.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.386 kcal (2) G-P(sol) polarization free energy of solvation -61.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds