Wall clock time and date at job start Mon Mar 30 2020 02:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46892 * 109.47306 * 2 1 4 4 C 1.46900 * 111.00265 * 66.04498 * 3 2 1 5 5 C 1.46903 * 111.00360 * 189.99834 * 3 2 1 6 6 H 1.08999 * 110.43396 * 298.91382 * 5 3 2 7 7 C 1.54889 * 110.48313 * 61.45032 * 5 3 2 8 8 C 1.54897 * 102.74591 * 156.75657 * 7 5 3 9 9 C 1.54264 * 104.19493 * 322.05796 * 8 7 5 10 10 H 1.09005 * 110.02738 * 264.32670 * 9 8 7 11 11 C 1.50697 * 110.03238 * 142.89921 * 9 8 7 12 12 H 1.08003 * 119.99440 * 241.45465 * 11 9 8 13 13 C 1.37876 * 120.00592 * 61.44783 * 11 9 8 14 14 N 1.31519 * 119.99531 * 0.02562 * 13 11 9 15 15 Si 1.86793 * 120.00491 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46869 * 60.00208 * 15 13 11 17 17 H 1.48498 * 109.47462 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47141 * 300.00656 * 15 13 11 19 19 C 1.53873 * 106.60152 * 23.60884 * 9 8 7 20 20 H 1.08993 * 109.46757 * 300.00261 * 1 2 3 21 21 H 1.09001 * 109.46659 * 60.00380 * 1 2 3 22 22 H 1.08999 * 109.47107 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47225 * 239.99705 * 2 1 3 24 24 H 1.09003 * 109.46808 * 120.00145 * 2 1 3 25 25 H 1.09000 * 109.47392 * 183.95816 * 4 3 2 26 26 H 1.09008 * 109.46979 * 303.95558 * 4 3 2 27 27 H 1.08998 * 109.47166 * 63.95420 * 4 3 2 28 28 H 1.09000 * 110.75622 * 38.44384 * 7 5 3 29 29 H 1.09002 * 110.76161 * 275.06898 * 7 5 3 30 30 H 1.08998 * 110.48266 * 80.73866 * 8 7 5 31 31 H 1.09000 * 110.48216 * 203.37721 * 8 7 5 32 32 H 0.97003 * 119.99738 * 180.02562 * 14 13 11 33 33 H 1.08999 * 110.03697 * 240.71678 * 19 9 8 34 34 H 1.08997 * 110.07421 * 119.30435 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6703 2.0669 1.2533 5 6 3.4686 1.4311 -0.2381 6 1 4.0009 0.8985 0.5500 7 6 3.8095 0.8299 -1.6243 8 6 5.1742 1.4842 -1.9543 9 6 5.0420 2.9252 -1.4195 10 1 4.7411 3.5959 -2.2243 11 6 6.3527 3.3796 -0.8309 12 1 6.4122 3.6447 0.2144 13 6 7.4760 3.4568 -1.6266 14 7 7.4035 3.1343 -2.8996 15 14 9.1009 4.0194 -0.8968 16 1 9.4984 3.0963 0.1964 17 1 10.1453 4.0161 -1.9524 18 1 8.9504 5.3935 -0.3541 19 6 3.9576 2.8914 -0.3284 20 1 -0.3632 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.9824 3.1098 1.1987 26 1 0.5919 2.0179 1.4052 27 1 2.1770 1.5791 2.0859 28 1 3.0581 1.1105 -2.3624 29 1 3.9058 -0.2540 -1.5623 30 1 5.9819 0.9602 -1.4433 31 1 5.3435 1.4909 -3.0310 32 1 8.1939 3.1883 -3.4593 33 1 3.1304 3.5458 -0.6035 34 1 4.3785 3.2039 0.6272 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260249376.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:38 Heat of formation + Delta-G solvation = -15.213054 kcal Electronic energy + Delta-G solvation = -13025.810408 eV Core-core repulsion = 10957.801325 eV Total energy + Delta-G solvation = -2068.009083 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.38590 -35.33768 -32.23506 -30.33210 -28.40082 -26.66592 -25.40523 -23.26917 -21.23485 -19.22888 -18.59784 -16.41639 -15.79682 -14.79162 -14.44885 -14.20566 -13.79884 -12.96933 -12.76988 -12.35308 -11.96630 -11.76952 -11.60674 -11.35847 -10.97535 -10.83535 -10.62681 -10.44857 -10.08333 -9.83825 -9.80577 -9.48619 -9.11319 -8.64210 -8.30626 -7.90709 -5.94177 -3.96567 3.35058 3.39728 3.42222 4.32540 4.49041 5.18483 5.35289 5.39933 5.45302 5.64435 5.69398 5.79605 5.84787 5.93420 6.04846 6.11609 6.19000 6.31873 6.46053 6.63671 6.68059 6.79856 6.91782 7.12209 7.31057 7.41771 7.50993 7.66956 7.82662 7.96699 8.11208 8.54548 9.06468 9.66615 11.15263 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.069950 B = 0.008250 C = 0.007734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.188999 B = 3393.277785 C = 3619.469559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.047 3.953 3 N -0.537 5.537 4 C 0.023 3.977 5 C 0.080 3.920 6 H 0.036 0.964 7 C -0.120 4.120 8 C -0.090 4.090 9 C 0.046 3.954 10 H 0.027 0.973 11 C -0.513 4.513 12 H 0.053 0.947 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.888 3.112 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.104 4.104 20 H 0.051 0.949 21 H 0.061 0.939 22 H 0.052 0.948 23 H 0.075 0.925 24 H 0.025 0.975 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.018 0.982 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.259 0.741 33 H 0.050 0.950 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.693 -4.935 4.979 11.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.081 4.081 3 N -0.261 5.261 4 C -0.125 4.125 5 C -0.028 4.028 6 H 0.054 0.946 7 C -0.158 4.158 8 C -0.128 4.128 9 C 0.027 3.973 10 H 0.045 0.955 11 C -0.551 4.551 12 H 0.071 0.929 13 C -0.141 4.141 14 N -0.529 5.529 15 Si 0.716 3.284 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.204 1.204 19 C -0.142 4.142 20 H 0.070 0.930 21 H 0.080 0.920 22 H 0.071 0.929 23 H 0.094 0.906 24 H 0.043 0.957 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.036 0.964 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.808 -4.695 4.432 11.742 hybrid contribution 1.400 -0.173 1.081 1.777 sum -8.408 -4.868 5.514 11.171 Atomic orbital electron populations 1.21800 0.95542 1.00895 1.02206 1.22075 0.95406 0.90027 1.00577 1.62204 1.15272 1.14786 1.33850 1.22384 1.00242 0.99865 0.90043 1.22611 0.84643 0.98589 0.96942 0.94604 1.22670 0.99893 0.97611 0.95607 1.22228 0.92432 0.97614 1.00562 1.19200 0.92285 0.93126 0.92645 0.95492 1.21284 0.93843 1.44431 0.95549 0.92901 1.24987 0.98769 0.95442 0.94864 1.69971 1.29281 1.48580 1.05034 0.86733 0.83713 0.79256 0.78716 1.20410 1.21362 1.20358 1.22321 0.98335 0.93000 1.00544 0.92990 0.91964 0.92862 0.90629 0.95703 0.91106 0.92009 0.96357 0.91841 0.93929 0.93128 0.92423 0.93119 0.93111 0.93217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.84 37.16 0.37 -1.33 16 2 C 0.05 0.67 5.55 -3.83 -0.02 0.65 16 3 N -0.54 -8.86 4.59 -232.88 -1.07 -9.93 16 4 C 0.02 0.33 9.12 60.06 0.55 0.88 16 5 C 0.08 1.53 2.57 -66.05 -0.17 1.36 16 6 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 7 C -0.12 -2.36 5.30 -24.73 -0.13 -2.49 16 8 C -0.09 -2.15 5.36 -25.07 -0.13 -2.28 16 9 C 0.05 1.18 2.84 -90.66 -0.26 0.92 16 10 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 11 C -0.51 -14.34 8.38 -34.44 -0.29 -14.63 16 12 H 0.05 1.46 7.33 -52.48 -0.38 1.07 16 13 C 0.06 1.71 5.32 -17.82 -0.09 1.62 16 14 N -0.89 -26.00 12.33 55.43 0.68 -25.31 16 15 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C -0.10 -2.24 4.93 -25.61 -0.13 -2.37 16 20 H 0.05 0.57 6.47 -51.93 -0.34 0.23 16 21 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.08 1.08 6.61 -51.93 -0.34 0.74 16 24 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 25 H 0.07 1.06 6.90 -51.93 -0.36 0.70 16 26 H 0.06 0.77 6.30 -51.92 -0.33 0.44 16 27 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.04 0.76 7.71 -51.93 -0.40 0.36 16 30 H 0.05 1.28 7.85 -51.93 -0.41 0.87 16 31 H 0.06 1.46 7.93 -51.93 -0.41 1.05 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.05 1.06 7.65 -51.93 -0.40 0.66 16 34 H 0.05 1.08 7.37 -51.93 -0.38 0.70 16 LS Contribution 264.40 15.07 3.98 3.98 Total: -1.00 -28.55 264.40 -7.58 -36.13 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -5.84 Total: -3.77 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -0.31 Total: -17.68 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: -0.39 Total: -35.24 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.55 -7.58 -36.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260249376.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.914 kcal (2) G-P(sol) polarization free energy of solvation -28.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds