Wall clock time and date at job start Mon Mar 30 2020 02:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46892 * 109.47306 * 2 1 4 4 C 1.46900 * 111.00265 * 66.04498 * 3 2 1 5 5 C 1.46903 * 111.00360 * 189.99834 * 3 2 1 6 6 H 1.08999 * 110.43396 * 298.91382 * 5 3 2 7 7 C 1.54889 * 110.48313 * 61.45032 * 5 3 2 8 8 C 1.54897 * 102.74591 * 156.75657 * 7 5 3 9 9 C 1.54264 * 104.19493 * 322.05796 * 8 7 5 10 10 H 1.09005 * 110.02738 * 264.32670 * 9 8 7 11 11 C 1.50697 * 110.03238 * 142.89921 * 9 8 7 12 12 H 1.08003 * 119.99440 * 241.45465 * 11 9 8 13 13 C 1.37876 * 120.00592 * 61.44783 * 11 9 8 14 14 N 1.31519 * 119.99531 * 0.02562 * 13 11 9 15 15 Si 1.86793 * 120.00491 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46869 * 60.00208 * 15 13 11 17 17 H 1.48498 * 109.47462 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47141 * 300.00656 * 15 13 11 19 19 C 1.53873 * 106.60152 * 23.60884 * 9 8 7 20 20 H 1.08993 * 109.46757 * 300.00261 * 1 2 3 21 21 H 1.09001 * 109.46659 * 60.00380 * 1 2 3 22 22 H 1.08999 * 109.47107 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47225 * 239.99705 * 2 1 3 24 24 H 1.09003 * 109.46808 * 120.00145 * 2 1 3 25 25 H 1.09000 * 109.47392 * 183.95816 * 4 3 2 26 26 H 1.09008 * 109.46979 * 303.95558 * 4 3 2 27 27 H 1.08998 * 109.47166 * 63.95420 * 4 3 2 28 28 H 1.09000 * 110.75622 * 38.44384 * 7 5 3 29 29 H 1.09002 * 110.76161 * 275.06898 * 7 5 3 30 30 H 1.08998 * 110.48266 * 80.73866 * 8 7 5 31 31 H 1.09000 * 110.48216 * 203.37721 * 8 7 5 32 32 H 0.97003 * 119.99738 * 180.02562 * 14 13 11 33 33 H 1.08999 * 110.03697 * 240.71678 * 19 9 8 34 34 H 1.08997 * 110.07421 * 119.30435 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6703 2.0669 1.2533 5 6 3.4686 1.4311 -0.2381 6 1 4.0009 0.8985 0.5500 7 6 3.8095 0.8299 -1.6243 8 6 5.1742 1.4842 -1.9543 9 6 5.0420 2.9252 -1.4195 10 1 4.7411 3.5959 -2.2243 11 6 6.3527 3.3796 -0.8309 12 1 6.4122 3.6447 0.2144 13 6 7.4760 3.4568 -1.6266 14 7 7.4035 3.1343 -2.8996 15 14 9.1009 4.0194 -0.8968 16 1 9.4984 3.0963 0.1964 17 1 10.1453 4.0161 -1.9524 18 1 8.9504 5.3935 -0.3541 19 6 3.9576 2.8914 -0.3284 20 1 -0.3632 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.9824 3.1098 1.1987 26 1 0.5919 2.0179 1.4052 27 1 2.1770 1.5791 2.0859 28 1 3.0581 1.1105 -2.3624 29 1 3.9058 -0.2540 -1.5623 30 1 5.9819 0.9602 -1.4433 31 1 5.3435 1.4909 -3.0310 32 1 8.1939 3.1883 -3.4593 33 1 3.1304 3.5458 -0.6035 34 1 4.3785 3.2039 0.6272 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260249376.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:38 Heat of formation + Delta-G solvation = -32.392531 kcal Electronic energy + Delta-G solvation = -13026.555366 eV Core-core repulsion = 10957.801325 eV Total energy + Delta-G solvation = -2068.754041 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.90699 -36.93762 -34.24906 -31.53080 -30.22002 -28.27710 -26.98811 -25.03394 -22.47274 -20.92064 -20.36936 -18.51012 -17.21435 -16.48297 -16.04138 -15.70591 -15.20012 -14.42292 -14.34334 -14.16771 -13.51273 -13.01781 -12.95515 -12.75536 -12.67415 -12.60895 -12.35999 -11.99585 -11.62820 -11.49597 -11.44309 -11.37548 -11.05912 -10.73599 -10.45186 -9.19905 -8.10635 -6.20641 1.40873 1.42368 1.50054 2.43842 3.05037 3.19564 3.90340 4.04855 4.18205 4.37882 4.38387 4.58953 4.64763 4.68847 4.77792 4.87200 4.95122 4.97525 4.98732 5.08141 5.16569 5.23037 5.29813 5.37858 5.45640 5.54180 5.66103 5.93452 5.97966 6.24607 6.29985 6.42360 6.90978 7.46297 8.98133 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.069950 B = 0.008250 C = 0.007734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.188999 B = 3393.277785 C = 3619.469559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.043 3.957 3 N -0.545 5.545 4 C 0.022 3.978 5 C 0.091 3.909 6 H 0.032 0.968 7 C -0.105 4.105 8 C -0.082 4.082 9 C 0.037 3.963 10 H -0.008 1.008 11 C -0.533 4.533 12 H 0.052 0.948 13 C 0.010 3.990 14 N -0.920 5.920 15 Si 0.953 3.047 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.271 1.271 19 C -0.093 4.093 20 H 0.059 0.941 21 H 0.056 0.944 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.030 0.970 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.021 0.979 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.030 0.970 31 H 0.033 0.967 32 H 0.260 0.740 33 H 0.055 0.945 34 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.576 -5.631 6.214 13.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.084 4.084 3 N -0.270 5.270 4 C -0.126 4.126 5 C -0.017 4.017 6 H 0.050 0.950 7 C -0.143 4.143 8 C -0.121 4.121 9 C 0.018 3.982 10 H 0.011 0.989 11 C -0.571 4.571 12 H 0.070 0.930 13 C -0.189 4.189 14 N -0.559 5.559 15 Si 0.779 3.221 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.196 1.196 19 C -0.131 4.131 20 H 0.078 0.922 21 H 0.075 0.925 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.048 0.952 25 H 0.080 0.920 26 H 0.105 0.895 27 H 0.040 0.960 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.709 -5.393 5.681 13.268 hybrid contribution 1.641 0.056 0.682 1.778 sum -9.068 -5.337 6.363 12.297 Atomic orbital electron populations 1.21753 0.93366 1.02327 1.02302 1.22192 0.97161 0.88403 1.00661 1.62165 1.12871 1.16691 1.35232 1.22440 1.01855 0.99090 0.89191 1.22337 0.86786 0.96289 0.96314 0.95019 1.22517 0.97041 0.98661 0.96088 1.22002 0.94467 0.97049 0.98551 1.19218 0.92881 0.93196 0.92904 0.98935 1.21645 0.95172 1.44627 0.95664 0.93020 1.25789 1.02329 0.95512 0.95229 1.70104 1.30196 1.49397 1.06223 0.85689 0.79338 0.79028 0.78083 1.19607 1.20922 1.19634 1.22124 0.97145 0.95192 0.98669 0.92217 0.92501 0.90830 0.90977 0.95183 0.92013 0.89539 0.96010 0.91448 0.91624 0.95103 0.94823 0.93111 0.92665 0.93665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.84 71.98 0.71 -2.05 16 2 C 0.04 1.10 5.55 86.31 0.48 1.58 16 3 N -0.54 -16.77 4.59 -890.71 -4.09 -20.86 16 4 C 0.02 0.59 9.12 127.69 1.16 1.75 16 5 C 0.09 3.38 2.57 45.99 0.12 3.50 16 6 H 0.03 1.21 8.14 -2.39 -0.02 1.20 16 7 C -0.11 -4.05 5.30 31.89 0.17 -3.89 16 8 C -0.08 -4.01 5.36 31.67 0.17 -3.84 16 9 C 0.04 1.93 2.84 -10.82 -0.03 1.90 16 10 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 11 C -0.53 -30.33 8.38 25.60 0.21 -30.12 16 12 H 0.05 2.88 7.33 -2.91 -0.02 2.85 16 13 C 0.01 0.57 5.32 84.65 0.45 1.02 16 14 N -0.92 -54.92 12.33 21.45 0.26 -54.66 16 15 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 19 C -0.09 -4.02 4.93 31.32 0.15 -3.87 16 20 H 0.06 1.08 6.47 -2.39 -0.02 1.07 16 21 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.07 1.87 6.61 -2.38 -0.02 1.85 16 24 H 0.03 0.74 8.12 -2.39 -0.02 0.72 16 25 H 0.06 1.74 6.90 -2.39 -0.02 1.73 16 26 H 0.09 1.87 6.30 -2.38 -0.02 1.86 16 27 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.07 2.23 7.71 -2.39 -0.02 2.21 16 30 H 0.03 1.59 7.85 -2.39 -0.02 1.57 16 31 H 0.03 1.76 7.93 -2.39 -0.02 1.74 16 32 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 33 H 0.05 2.29 7.65 -2.39 -0.02 2.28 16 34 H 0.04 1.96 7.37 -2.39 -0.02 1.94 16 Total: -1.00 -61.28 264.40 2.84 -58.44 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: 1.04 Total: 4.53 kcal Atomic # 6 Polarization: -37.60 SS G_CDS: 3.60 Total: -34.01 kcal Atomic # 7 Polarization: -71.69 SS G_CDS: -3.83 Total: -75.52 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -61.28 2.84 -58.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260249376.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.050 kcal (2) G-P(sol) polarization free energy of solvation -61.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds