Wall clock time and date at job start Mon Mar 30 2020 01:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99583 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00273 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47042 * 89.99722 * 9 7 5 11 11 H 1.48506 * 109.47062 * 209.99913 * 9 7 5 12 12 H 1.48495 * 109.46994 * 329.99733 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 H 1.09004 * 109.50371 * 60.08547 * 13 2 1 15 15 C 1.53119 * 109.50522 * 300.00233 * 13 2 1 16 16 C 1.53125 * 109.16037 * 182.40856 * 15 13 2 17 17 C 1.53029 * 109.28060 * 57.65097 * 16 15 13 18 18 N 1.46846 * 109.52448 * 300.81780 * 17 16 15 19 19 C 1.46849 * 111.19464 * 61.74629 * 18 17 16 20 20 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 21 21 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 24 24 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 25 25 H 0.97001 * 119.99531 * 179.97438 * 8 7 5 26 26 H 1.09000 * 109.51836 * 302.30647 * 15 13 2 27 27 H 1.08995 * 109.52603 * 62.49966 * 15 13 2 28 28 H 1.09001 * 109.50303 * 177.59747 * 16 15 13 29 29 H 1.09009 * 109.49783 * 297.66765 * 16 15 13 30 30 H 1.09000 * 109.46640 * 60.83821 * 17 16 15 31 31 H 1.08999 * 109.46128 * 180.80927 * 17 16 15 32 32 H 1.00897 * 111.00501 * 297.65001 * 18 17 16 33 33 H 1.09000 * 109.46430 * 178.23897 * 19 18 17 34 34 H 1.09003 * 109.46630 * 58.27265 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 1.6458 0.2777 -4.7993 9 14 2.9637 -1.9885 -3.9027 10 1 2.0244 -3.1327 -4.0199 11 1 3.8127 -1.9183 -5.1191 12 1 3.8253 -2.1757 -2.7078 13 6 2.0399 -0.7212 1.2493 14 1 1.6781 -1.7494 1.2490 15 6 1.5299 0.0000 2.5000 16 6 2.0936 -0.6920 3.7442 17 6 3.6223 -0.6890 3.6751 18 7 4.0602 -1.3911 2.4620 19 6 3.5703 -0.7174 1.2526 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1264 -0.7995 -1.2055 24 1 1.6055 -1.7198 -1.2951 25 1 1.8938 -0.0449 -5.6799 26 1 1.8586 1.0391 2.4807 27 1 0.4409 -0.0381 2.5238 28 1 1.7685 -0.1573 4.6367 29 1 1.7324 -1.7197 3.7840 30 1 3.9828 0.3394 3.6496 31 1 4.0265 -1.1937 4.5526 32 1 3.7714 -2.3578 2.4795 33 1 3.9367 -1.2427 0.3706 34 1 3.9310 0.3111 1.2384 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260310575.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:30 Heat of formation + Delta-G solvation = -51.431014 kcal Electronic energy + Delta-G solvation = -13068.694214 eV Core-core repulsion = 10999.114603 eV Total energy + Delta-G solvation = -2069.579612 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.22215 -36.67558 -34.43555 -32.49769 -30.84557 -29.15502 -25.76986 -23.94175 -23.55255 -21.31108 -20.56780 -18.93440 -16.88958 -16.46790 -15.96175 -15.65272 -15.12603 -14.70320 -14.53689 -14.20812 -13.76783 -13.37784 -13.17261 -12.83751 -12.73366 -12.49895 -12.25180 -12.08602 -11.79971 -11.63197 -11.54772 -11.42211 -11.03862 -10.74922 -10.69980 -9.18217 -8.26800 -6.28573 1.34583 1.36845 1.48537 2.36959 3.08621 3.43359 3.80936 3.95503 4.05636 4.16287 4.39134 4.45291 4.54671 4.65506 4.70183 4.76162 4.88572 5.01942 5.04552 5.09156 5.15369 5.19658 5.22810 5.36394 5.41627 5.43748 5.58100 5.72827 5.74911 6.12771 6.34103 6.54038 6.79218 7.34920 8.90102 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.048331 B = 0.009599 C = 0.008457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.201421 B = 2916.418948 C = 3309.971770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.067 4.067 3 H 0.046 0.954 4 C -0.006 4.006 5 C -0.519 4.519 6 H 0.033 0.967 7 C 0.001 3.999 8 N -0.955 5.955 9 Si 0.946 3.054 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.246 1.246 13 C -0.108 4.108 14 H 0.065 0.935 15 C -0.113 4.113 16 C -0.149 4.149 17 C 0.055 3.945 18 N -0.692 5.692 19 C 0.063 3.937 20 H 0.064 0.936 21 H 0.031 0.969 22 H 0.048 0.952 23 H 0.022 0.978 24 H 0.011 0.989 25 H 0.264 0.736 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.344 0.656 33 H 0.063 0.937 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.128 -4.630 17.346 18.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.086 4.086 3 H 0.065 0.935 4 C -0.043 4.043 5 C -0.557 4.557 6 H 0.051 0.949 7 C -0.195 4.195 8 N -0.596 5.596 9 Si 0.770 3.230 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.169 1.169 13 C -0.129 4.129 14 H 0.083 0.917 15 C -0.151 4.151 16 C -0.188 4.188 17 C -0.074 4.074 18 N -0.320 5.320 19 C -0.067 4.067 20 H 0.083 0.917 21 H 0.050 0.950 22 H 0.067 0.933 23 H 0.040 0.960 24 H 0.030 0.970 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.162 0.838 33 H 0.082 0.918 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.786 -4.319 17.169 17.922 hybrid contribution -0.836 -0.462 -0.994 1.378 sum 1.950 -4.781 16.175 16.980 Atomic orbital electron populations 1.21698 0.95605 1.00979 1.00420 1.20894 0.95708 0.98330 0.93667 0.93522 1.19632 0.96227 0.95325 0.93161 1.21517 1.34190 1.08624 0.91415 0.94887 1.26003 0.97033 1.00928 0.95558 1.70081 1.49183 1.41652 0.98701 0.85710 0.79383 0.79550 0.78337 1.19426 1.21204 1.16913 1.21816 0.96936 0.99494 0.94619 0.91677 1.21648 1.00668 0.99126 0.93658 1.22219 0.97408 1.01204 0.98017 1.22090 0.93072 0.99624 0.92644 1.60708 1.62720 1.06549 1.02036 1.22019 0.92433 0.99468 0.92747 0.91682 0.95010 0.93325 0.95984 0.97021 0.92725 0.92530 0.91433 0.90099 0.91699 0.91597 0.89229 0.83795 0.91828 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 8.65 71.98 0.62 -4.15 16 2 C -0.07 -2.57 1.92 -10.79 -0.02 -2.59 16 3 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 4 C -0.01 -0.29 3.30 29.85 0.10 -0.19 16 5 C -0.52 -30.20 8.96 25.60 0.23 -29.97 16 6 H 0.03 2.11 7.30 -2.91 -0.02 2.09 16 7 C 0.00 0.04 5.47 84.65 0.46 0.51 16 8 N -0.95 -61.02 13.96 21.45 0.30 -60.72 16 9 Si 0.95 45.19 27.47 68.60 1.88 47.07 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.25 -10.87 6.54 99.48 0.65 -10.22 16 13 C -0.11 -3.24 1.92 -10.74 -0.02 -3.26 16 14 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 15 C -0.11 -2.77 4.86 30.68 0.15 -2.62 16 16 C -0.15 -2.85 6.08 30.65 0.19 -2.66 16 17 C 0.06 1.10 6.55 86.32 0.57 1.67 16 18 N -0.69 -16.99 6.87 -514.01 -3.53 -20.52 16 19 C 0.06 1.89 5.47 86.33 0.47 2.36 16 20 H 0.06 1.97 6.49 -2.39 -0.02 1.96 16 21 H 0.03 1.35 6.95 -2.39 -0.02 1.33 16 22 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.02 1.02 5.26 -2.39 -0.01 1.01 16 24 H 0.01 0.53 7.57 -2.39 -0.02 0.51 16 25 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 26 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.07 1.60 6.57 -2.39 -0.02 1.58 16 28 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.34 7.58 8.86 -89.70 -0.79 6.79 16 33 H 0.06 2.14 6.37 -2.39 -0.02 2.12 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -64.86 259.20 1.61 -63.25 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.21 Total: 11.83 kcal Atomic # 6 Polarization: -43.66 SS G_CDS: 2.75 Total: -40.91 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -3.23 Total: -81.24 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.07 kcal Total: -64.86 1.61 -63.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260310575.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.816 kcal (2) G-P(sol) polarization free energy of solvation -64.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds