Wall clock time and date at job start Mon Mar 30 2020 01:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47071 * 2 1 4 4 C 1.53004 * 109.47443 * 240.00206 * 2 1 3 5 5 C 1.50699 * 109.46843 * 64.99820 * 4 2 1 6 6 H 1.08002 * 120.00516 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99783 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99707 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99956 * 180.27458 * 7 5 4 10 10 H 1.48497 * 109.47172 * 179.72730 * 9 7 5 11 11 H 1.48506 * 109.47132 * 299.72429 * 9 7 5 12 12 H 1.48501 * 109.47173 * 59.72550 * 9 7 5 13 13 C 1.53002 * 109.47119 * 120.00133 * 2 1 3 14 14 H 1.08995 * 109.50466 * 60.00383 * 13 2 1 15 15 C 1.53120 * 109.50382 * 180.02562 * 13 2 1 16 16 C 1.53123 * 109.15986 * 177.55460 * 15 13 2 17 17 C 1.53035 * 109.31122 * 302.40474 * 16 15 13 18 18 N 1.46842 * 109.52311 * 59.15739 * 17 16 15 19 19 C 1.46848 * 111.19809 * 298.25823 * 18 17 16 20 20 H 1.08997 * 109.47191 * 60.00378 * 1 2 3 21 21 H 1.09006 * 109.46667 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46957 * 299.99761 * 1 2 3 23 23 H 1.09001 * 109.46361 * 305.00161 * 4 2 1 24 24 H 1.08997 * 109.46991 * 185.00052 * 4 2 1 25 25 H 0.97005 * 119.99656 * 179.97438 * 8 7 5 26 26 H 1.09000 * 109.52424 * 297.50476 * 15 13 2 27 27 H 1.09003 * 109.52419 * 57.68880 * 15 13 2 28 28 H 1.09000 * 109.50525 * 182.44497 * 16 15 13 29 29 H 1.08995 * 109.50039 * 62.37040 * 16 15 13 30 30 H 1.09000 * 109.46198 * 299.14512 * 17 16 15 31 31 H 1.08997 * 109.45538 * 179.16771 * 17 16 15 32 32 H 1.00900 * 111.00567 * 174.16354 * 18 17 16 33 33 H 1.09000 * 109.46681 * 301.72390 * 19 18 17 34 34 H 1.09006 * 109.45286 * 181.75069 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6414 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9925 -0.4021 -3.7284 8 7 2.6748 -1.5196 -3.8512 9 14 1.5049 0.5666 -5.2493 10 1 2.0040 -0.1309 -6.4615 11 1 0.0252 0.6745 -5.3142 12 1 2.0978 1.9264 -5.1812 13 6 2.0400 -0.7213 1.2492 14 1 1.6770 -1.7490 1.2497 15 6 3.5712 -0.7212 1.2503 16 6 4.0729 -1.3904 2.5329 17 6 3.5070 -0.6483 3.7457 18 7 2.0396 -0.6781 3.6985 19 6 1.5331 0.0015 2.4993 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0278 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6054 -1.7197 -1.2951 24 1 3.1264 -0.7994 -1.2055 25 1 2.9215 -1.8429 -4.7319 26 1 3.9361 -1.2729 0.3840 27 1 3.9354 0.3054 1.2093 28 1 5.1620 -1.3547 2.5600 29 1 3.7423 -2.4288 2.5547 30 1 3.8499 0.3863 3.7309 31 1 3.8508 -1.1318 4.6601 32 1 1.6426 -0.2782 4.5355 33 1 1.8852 1.0330 2.4903 34 1 0.4431 -0.0101 2.5086 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260310590.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:39 Heat of formation + Delta-G solvation = -32.787037 kcal Electronic energy + Delta-G solvation = -12990.810337 eV Core-core repulsion = 10922.039188 eV Total energy + Delta-G solvation = -2068.771148 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.67889 -35.00329 -32.34458 -31.48651 -29.10874 -26.87379 -24.10185 -23.19679 -21.85501 -19.56102 -18.85551 -16.59543 -15.90332 -14.66218 -14.39903 -13.78873 -13.51419 -13.37167 -12.89797 -12.80593 -12.34541 -11.92285 -11.47080 -11.16225 -10.90502 -10.79736 -10.64007 -10.45750 -10.23335 -10.06581 -9.73974 -9.51314 -8.92629 -8.85097 -8.30447 -8.24373 -5.93858 -3.94728 3.35855 3.40356 3.42670 4.39444 4.51164 5.14840 5.23213 5.33416 5.41608 5.50972 5.68157 5.80402 5.87877 6.05177 6.07627 6.13219 6.23085 6.29646 6.46528 6.55086 6.68369 6.76398 6.83583 7.09442 7.13023 7.25954 7.30468 7.55265 7.76304 7.93270 8.07618 8.51384 9.11750 9.68092 11.17448 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.060256 B = 0.008242 C = 0.007579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.570028 B = 3396.284380 C = 3693.682102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.082 4.082 3 H 0.052 0.948 4 C 0.028 3.972 5 C -0.515 4.515 6 H 0.054 0.946 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.288 1.288 11 H -0.278 1.278 12 H -0.278 1.278 13 C -0.077 4.077 14 H 0.071 0.929 15 C -0.117 4.117 16 C -0.118 4.118 17 C 0.059 3.941 18 N -0.692 5.692 19 C 0.061 3.939 20 H 0.059 0.941 21 H 0.045 0.955 22 H 0.031 0.969 23 H 0.014 0.986 24 H 0.020 0.980 25 H 0.259 0.741 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.025 0.975 31 H 0.066 0.934 32 H 0.334 0.666 33 H 0.024 0.976 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.091 2.240 12.429 12.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.009 4.009 5 C -0.553 4.553 6 H 0.072 0.928 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.716 3.284 10 H -0.214 1.214 11 H -0.203 1.203 12 H -0.204 1.204 13 C -0.096 4.096 14 H 0.089 0.911 15 C -0.155 4.155 16 C -0.156 4.156 17 C -0.070 4.070 18 N -0.323 5.323 19 C -0.068 4.068 20 H 0.078 0.922 21 H 0.064 0.936 22 H 0.050 0.950 23 H 0.033 0.967 24 H 0.038 0.962 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.151 0.849 33 H 0.043 0.957 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.152 1.500 12.010 12.104 hybrid contribution -0.064 1.443 -0.703 1.607 sum 0.088 2.943 11.307 11.684 Atomic orbital electron populations 1.21768 0.96560 1.00812 0.99957 1.21217 0.94869 0.98975 0.95001 0.92934 1.19172 0.96324 0.95310 0.90115 1.21255 1.34600 1.08251 0.91205 0.92797 1.25013 0.95400 0.95086 0.99003 1.69957 1.39091 1.21181 1.23393 0.86720 0.78838 0.80155 0.82639 1.21372 1.20336 1.20369 1.21238 0.94783 1.00081 0.93466 0.91106 1.21677 0.96051 1.00428 0.97302 1.21612 0.99086 1.00283 0.94614 1.21901 0.88115 0.98254 0.98726 1.60298 1.06888 1.60103 1.04977 1.22109 0.99552 0.94845 0.90246 0.92190 0.93622 0.95008 0.96726 0.96209 0.93086 0.90537 0.92853 0.92192 0.91440 0.95713 0.91567 0.84888 0.95731 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.65 37.16 0.32 -2.25 16 2 C -0.08 -1.69 1.92 -90.62 -0.17 -1.86 16 3 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.03 0.71 4.23 -27.88 -0.12 0.60 16 5 C -0.51 -14.55 8.41 -34.44 -0.29 -14.84 16 6 H 0.05 1.48 7.06 -52.49 -0.37 1.11 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 9 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C -0.08 -1.37 1.94 -90.54 -0.18 -1.55 16 14 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 15 C -0.12 -2.02 4.87 -26.61 -0.13 -2.15 16 16 C -0.12 -1.69 6.09 -26.65 -0.16 -1.86 16 17 C 0.06 0.76 6.55 -3.84 -0.03 0.74 16 18 N -0.69 -9.37 6.85 -113.82 -0.78 -10.15 16 19 C 0.06 0.93 5.46 -3.83 -0.02 0.91 16 20 H 0.06 1.23 6.95 -51.93 -0.36 0.87 16 21 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.03 0.51 6.45 -51.93 -0.34 0.18 16 23 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.02 0.54 6.23 -51.93 -0.32 0.21 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.08 1.48 6.46 -51.93 -0.34 1.14 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.33 3.71 8.90 -39.29 -0.35 3.36 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 1.08 6.48 -51.93 -0.34 0.74 16 LS Contribution 262.84 15.07 3.96 3.96 Total: -1.00 -29.70 262.84 -7.75 -37.45 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -5.77 Total: -0.92 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -0.87 Total: -20.76 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: -0.04 Total: -36.58 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.70 -7.75 -37.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260310590.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.658 kcal (2) G-P(sol) polarization free energy of solvation -29.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds