Wall clock time and date at job start Mon Mar 30 2020 01:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47071 * 2 1 4 4 C 1.53004 * 109.47443 * 240.00206 * 2 1 3 5 5 C 1.50699 * 109.46843 * 64.99820 * 4 2 1 6 6 H 1.08002 * 120.00516 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99783 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99707 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99956 * 180.27458 * 7 5 4 10 10 H 1.48497 * 109.47172 * 179.72730 * 9 7 5 11 11 H 1.48506 * 109.47132 * 299.72429 * 9 7 5 12 12 H 1.48501 * 109.47173 * 59.72550 * 9 7 5 13 13 C 1.53002 * 109.47119 * 120.00133 * 2 1 3 14 14 H 1.08995 * 109.50466 * 60.00383 * 13 2 1 15 15 C 1.53120 * 109.50382 * 180.02562 * 13 2 1 16 16 C 1.53123 * 109.15986 * 177.55460 * 15 13 2 17 17 C 1.53035 * 109.31122 * 302.40474 * 16 15 13 18 18 N 1.46842 * 109.52311 * 59.15739 * 17 16 15 19 19 C 1.46848 * 111.19809 * 298.25823 * 18 17 16 20 20 H 1.08997 * 109.47191 * 60.00378 * 1 2 3 21 21 H 1.09006 * 109.46667 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46957 * 299.99761 * 1 2 3 23 23 H 1.09001 * 109.46361 * 305.00161 * 4 2 1 24 24 H 1.08997 * 109.46991 * 185.00052 * 4 2 1 25 25 H 0.97005 * 119.99656 * 179.97438 * 8 7 5 26 26 H 1.09000 * 109.52424 * 297.50476 * 15 13 2 27 27 H 1.09003 * 109.52419 * 57.68880 * 15 13 2 28 28 H 1.09000 * 109.50525 * 182.44497 * 16 15 13 29 29 H 1.08995 * 109.50039 * 62.37040 * 16 15 13 30 30 H 1.09000 * 109.46198 * 299.14512 * 17 16 15 31 31 H 1.08997 * 109.45538 * 179.16771 * 17 16 15 32 32 H 1.00900 * 111.00567 * 174.16354 * 18 17 16 33 33 H 1.09000 * 109.46681 * 301.72390 * 19 18 17 34 34 H 1.09006 * 109.45286 * 181.75069 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6414 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9925 -0.4021 -3.7284 8 7 2.6748 -1.5196 -3.8512 9 14 1.5049 0.5666 -5.2493 10 1 2.0040 -0.1309 -6.4615 11 1 0.0252 0.6745 -5.3142 12 1 2.0978 1.9264 -5.1812 13 6 2.0400 -0.7213 1.2492 14 1 1.6770 -1.7490 1.2497 15 6 3.5712 -0.7212 1.2503 16 6 4.0729 -1.3904 2.5329 17 6 3.5070 -0.6483 3.7457 18 7 2.0396 -0.6781 3.6985 19 6 1.5331 0.0015 2.4993 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0278 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6054 -1.7197 -1.2951 24 1 3.1264 -0.7994 -1.2055 25 1 2.9215 -1.8429 -4.7319 26 1 3.9361 -1.2729 0.3840 27 1 3.9354 0.3054 1.2093 28 1 5.1620 -1.3547 2.5600 29 1 3.7423 -2.4288 2.5547 30 1 3.8499 0.3863 3.7309 31 1 3.8508 -1.1318 4.6601 32 1 1.6426 -0.2782 4.5355 33 1 1.8852 1.0330 2.4903 34 1 0.4431 -0.0101 2.5086 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260310590.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:39 Heat of formation + Delta-G solvation = -52.099157 kcal Electronic energy + Delta-G solvation = -12991.647773 eV Core-core repulsion = 10922.039188 eV Total energy + Delta-G solvation = -2069.608585 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.01914 -36.61825 -34.39839 -32.72288 -30.67605 -28.70549 -25.90448 -24.46587 -23.44786 -20.96257 -20.42733 -18.53324 -17.33524 -16.58332 -15.76343 -15.12177 -14.93039 -14.79809 -14.60506 -14.27419 -13.80292 -13.55482 -13.31068 -12.82510 -12.66451 -12.53447 -12.19777 -12.01801 -11.78422 -11.67918 -11.40345 -11.19856 -10.76041 -10.66312 -10.46526 -9.33893 -8.16241 -6.25498 1.39073 1.41951 1.49638 2.42115 3.16538 3.34282 3.90494 3.99252 4.03493 4.23273 4.47628 4.50491 4.58292 4.67440 4.74771 4.80253 4.82641 5.00713 5.10199 5.10874 5.18183 5.29622 5.34273 5.45616 5.49878 5.51018 5.65368 5.86864 5.92348 6.12669 6.31982 6.61842 6.91218 7.42334 8.95417 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.060256 B = 0.008242 C = 0.007579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.570028 B = 3396.284380 C = 3693.682102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.075 4.075 3 H 0.050 0.950 4 C 0.035 3.965 5 C -0.532 4.532 6 H 0.060 0.940 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.960 3.040 10 H -0.285 1.285 11 H -0.267 1.267 12 H -0.268 1.268 13 C -0.072 4.072 14 H 0.053 0.947 15 C -0.117 4.117 16 C -0.115 4.115 17 C 0.061 3.939 18 N -0.697 5.697 19 C 0.070 3.930 20 H 0.042 0.958 21 H 0.039 0.961 22 H 0.068 0.932 23 H -0.018 1.018 24 H -0.005 1.005 25 H 0.261 0.739 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.031 0.969 31 H 0.092 0.908 32 H 0.353 0.647 33 H 0.030 0.970 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.498 3.564 13.730 14.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.094 4.094 3 H 0.069 0.931 4 C -0.002 4.002 5 C -0.570 4.570 6 H 0.078 0.922 7 C -0.200 4.200 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.210 1.210 11 H -0.192 1.192 12 H -0.193 1.193 13 C -0.091 4.091 14 H 0.071 0.929 15 C -0.155 4.155 16 C -0.153 4.153 17 C -0.068 4.068 18 N -0.330 5.330 19 C -0.059 4.059 20 H 0.062 0.938 21 H 0.058 0.942 22 H 0.087 0.913 23 H 0.000 1.000 24 H 0.013 0.987 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.110 0.890 32 H 0.172 0.828 33 H 0.048 0.952 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.446 2.835 13.338 13.643 hybrid contribution 0.153 0.988 -1.098 1.485 sum -0.294 3.824 12.240 12.827 Atomic orbital electron populations 1.21699 0.95101 1.00760 1.00950 1.21069 0.96068 0.98239 0.93991 0.93136 1.19043 0.94654 0.94086 0.92460 1.21686 1.34449 1.08595 0.92319 0.92207 1.25958 0.95305 0.96105 1.02627 1.70106 1.40318 1.22943 1.24247 0.85579 0.78925 0.78789 0.78235 1.21004 1.19221 1.19271 1.21113 0.95099 0.99051 0.93853 0.92875 1.21631 0.95827 1.00209 0.97848 1.21592 1.00226 0.99674 0.93773 1.21927 0.87594 0.98603 0.98665 1.60214 1.07478 1.60181 1.05115 1.21919 1.00005 0.94542 0.89401 0.93847 0.94196 0.91282 0.99958 0.98662 0.92998 0.93937 0.92872 0.90542 0.92251 0.95029 0.89006 0.82756 0.95218 0.89888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 8.65 71.98 0.62 -4.19 16 2 C -0.07 -3.12 1.92 -10.79 -0.02 -3.14 16 3 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 4 C 0.03 1.86 4.23 29.85 0.13 1.99 16 5 C -0.53 -30.70 8.41 25.60 0.22 -30.48 16 6 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16 7 C 0.00 -0.17 5.46 84.66 0.46 0.30 16 8 N -0.94 -58.25 13.29 21.45 0.28 -57.97 16 9 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 13 C -0.07 -2.57 1.94 -10.74 -0.02 -2.59 16 14 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 15 C -0.12 -4.10 4.87 30.68 0.15 -3.95 16 16 C -0.11 -3.15 6.09 30.65 0.19 -2.96 16 17 C 0.06 1.38 6.55 86.33 0.57 1.95 16 18 N -0.70 -16.78 6.85 -514.01 -3.52 -20.30 16 19 C 0.07 1.96 5.46 86.33 0.47 2.44 16 20 H 0.04 1.75 6.95 -2.39 -0.02 1.73 16 21 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 22 H 0.07 2.07 6.45 -2.39 -0.02 2.06 16 23 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 24 H 0.00 -0.28 6.23 -2.39 -0.01 -0.30 16 25 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 26 H 0.04 1.74 6.46 -2.39 -0.02 1.72 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.35 6.50 8.90 -89.69 -0.80 5.71 16 33 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 2.16 6.48 -2.38 -0.02 2.15 16 Total: -1.00 -64.79 262.84 1.81 -62.98 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 0.26 Total: 8.81 kcal Atomic # 6 Polarization: -43.41 SS G_CDS: 2.76 Total: -40.65 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -3.23 Total: -78.26 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -64.79 1.81 -62.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260310590.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.882 kcal (2) G-P(sol) polarization free energy of solvation -64.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds