Wall clock time and date at job start Mon Mar 30 2020 01:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47014 * 2 1 4 4 C 1.53001 * 109.46991 * 240.00110 * 2 1 3 5 5 C 1.50694 * 109.47168 * 64.99889 * 4 2 1 6 6 H 1.08000 * 120.00563 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99902 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99854 * 179.72538 * 7 5 4 10 10 H 1.48504 * 109.47032 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46816 * 120.00323 * 9 7 5 12 12 H 1.48495 * 109.46630 * 240.00111 * 9 7 5 13 13 C 1.52998 * 109.47185 * 120.00059 * 2 1 3 14 14 H 1.08995 * 110.64805 * 63.14951 * 13 2 1 15 15 C 1.54600 * 110.72212 * 300.00065 * 13 2 1 16 16 C 1.53995 * 105.13633 * 219.68328 * 15 13 2 17 17 N 1.47896 * 107.06300 * 358.77866 * 16 15 13 18 18 C 1.46900 * 111.00314 * 145.84329 * 17 16 15 19 19 C 1.48537 * 105.81897 * 25.32348 * 17 16 15 20 20 H 1.08995 * 109.47091 * 299.99973 * 1 2 3 21 21 H 1.08996 * 109.46891 * 59.99909 * 1 2 3 22 22 H 1.09000 * 109.47014 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46837 * 304.99910 * 4 2 1 24 24 H 1.09002 * 109.46926 * 184.99714 * 4 2 1 25 25 H 0.97001 * 119.99646 * 180.02562 * 8 7 5 26 26 H 1.08998 * 110.30952 * 338.60017 * 15 13 2 27 27 H 1.09000 * 110.30728 * 100.66858 * 15 13 2 28 28 H 1.09009 * 109.91537 * 118.13096 * 16 15 13 29 29 H 1.08997 * 109.91672 * 239.22117 * 16 15 13 30 30 H 1.08997 * 109.47162 * 60.12263 * 18 17 16 31 31 H 1.08997 * 109.46612 * 180.12814 * 18 17 16 32 32 H 1.08996 * 109.46606 * 300.12174 * 18 17 16 33 33 H 1.09004 * 110.66767 * 202.35744 * 19 17 16 34 34 H 1.09006 * 110.66391 * 79.23462 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0570 -2.4765 6 1 1.0800 0.9741 -2.3758 7 6 1.9933 -0.4017 -3.7283 8 7 2.6764 -1.5188 -3.8511 9 14 1.4924 0.5590 -5.2500 10 1 0.7309 1.7675 -4.8440 11 1 2.7075 0.9686 -5.9990 12 1 0.6412 -0.2951 -6.1166 13 6 2.0401 -0.7213 1.2492 14 1 1.7339 -1.7673 1.2410 15 6 1.5408 -0.0152 2.5307 16 6 2.7334 -0.0577 3.5040 17 7 3.8289 -0.7755 2.8168 18 6 5.1376 -0.2280 3.1980 19 6 3.5803 -0.5977 1.3632 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.6054 -1.7198 -1.2951 24 1 3.1264 -0.7994 -1.2056 25 1 2.9243 -1.8413 -4.7317 26 1 1.2676 1.0171 2.3119 27 1 0.6889 -0.5505 2.9501 28 1 3.0498 0.9564 3.7481 29 1 2.4515 -0.5877 4.4138 30 1 5.2753 -0.3317 4.2743 31 1 5.9249 -0.7724 2.6767 32 1 5.1835 0.8264 2.9258 33 1 4.0728 -1.3831 0.7898 34 1 3.9127 0.3867 1.0337 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260459766.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:42 Heat of formation + Delta-G solvation = -39.347957 kcal Electronic energy + Delta-G solvation = -12907.777116 eV Core-core repulsion = 10838.721464 eV Total energy + Delta-G solvation = -2069.055651 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.20061 -36.75781 -34.47826 -31.95662 -29.62148 -28.86863 -26.23625 -25.37272 -22.45439 -21.71020 -20.40660 -18.46096 -16.98102 -16.49108 -16.25648 -15.63397 -14.70392 -14.48194 -14.34390 -14.17498 -13.88507 -13.39885 -12.95822 -12.83356 -12.62921 -12.46280 -12.38427 -12.19349 -12.11636 -11.79557 -11.56375 -11.27339 -10.93070 -10.74932 -10.51794 -9.39180 -8.16372 -6.25614 1.39257 1.39706 1.52483 2.42087 3.11397 3.16826 3.77466 3.81327 4.03865 4.30133 4.41404 4.50197 4.55782 4.60573 4.69070 4.77274 4.81780 4.93530 4.97562 5.00805 5.07570 5.18242 5.29131 5.38187 5.47047 5.50436 5.60036 5.85383 5.90392 5.93126 6.13993 6.31637 6.91497 7.42552 8.95542 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.051699 B = 0.008255 C = 0.007549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.462487 B = 3391.050366 C = 3708.026883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.069 4.069 3 H 0.051 0.949 4 C 0.034 3.966 5 C -0.530 4.530 6 H 0.060 0.940 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.280 1.280 13 C -0.082 4.082 14 H 0.064 0.936 15 C -0.120 4.120 16 C 0.036 3.964 17 N -0.539 5.539 18 C 0.016 3.984 19 C 0.046 3.954 20 H 0.068 0.932 21 H 0.043 0.957 22 H 0.041 0.959 23 H -0.014 1.014 24 H -0.010 1.010 25 H 0.261 0.739 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.028 0.972 33 H 0.059 0.941 34 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.459 4.348 13.101 13.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.088 4.088 3 H 0.069 0.931 4 C -0.003 4.003 5 C -0.568 4.568 6 H 0.078 0.922 7 C -0.200 4.200 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.205 1.205 13 C -0.101 4.101 14 H 0.082 0.918 15 C -0.158 4.158 16 C -0.091 4.091 17 N -0.263 5.263 18 C -0.133 4.133 19 C -0.081 4.081 20 H 0.087 0.913 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.004 0.996 24 H 0.008 0.992 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.070 0.930 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.369 3.695 13.148 13.663 hybrid contribution 0.165 0.885 -1.479 1.732 sum -0.204 4.581 11.669 12.537 Atomic orbital electron populations 1.21654 0.94817 1.00889 1.01000 1.21062 0.96247 0.97980 0.93485 0.93072 1.19028 0.94403 0.94324 0.92565 1.21725 1.34261 1.08558 0.92257 0.92171 1.25954 0.95340 0.96093 1.02628 1.70117 1.40391 1.22920 1.24133 0.85480 0.78071 0.78902 0.79101 1.18559 1.20607 1.20545 1.22045 0.93831 0.99504 0.94696 0.91790 1.22469 0.98179 1.01098 0.94005 1.22930 0.91054 0.97196 0.97933 1.64721 1.03334 1.53511 1.04768 1.22554 0.90873 0.97493 1.02361 1.23130 0.96754 0.99241 0.89004 0.91340 0.93832 0.94015 0.99595 0.99152 0.93014 0.90859 0.89865 0.93040 0.89177 0.89606 0.91622 0.95358 0.92232 0.94483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 8.77 71.98 0.63 -4.00 16 2 C -0.07 -2.81 1.74 -10.79 -0.02 -2.83 16 3 H 0.05 2.11 8.10 -2.39 -0.02 2.09 16 4 C 0.03 1.80 4.37 29.85 0.13 1.93 16 5 C -0.53 -30.21 8.41 25.60 0.22 -29.99 16 6 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16 7 C 0.00 -0.18 5.46 84.66 0.46 0.29 16 8 N -0.93 -57.77 13.29 21.45 0.28 -57.49 16 9 Si 0.96 44.83 29.54 68.60 2.03 46.85 16 10 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 C -0.08 -2.85 2.60 -9.59 -0.02 -2.87 16 14 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 15 C -0.12 -3.17 5.49 31.48 0.17 -3.00 16 16 C 0.04 0.89 6.70 86.45 0.58 1.47 16 17 N -0.54 -15.78 5.55 -909.16 -5.05 -20.83 16 18 C 0.02 0.37 9.40 127.69 1.20 1.57 16 19 C 0.05 1.63 5.15 86.65 0.45 2.08 16 20 H 0.07 2.00 7.06 -2.39 -0.02 1.99 16 21 H 0.04 1.72 6.95 -2.39 -0.02 1.71 16 22 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 23 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 24 H -0.01 -0.57 7.21 -2.39 -0.02 -0.59 16 25 H 0.26 15.17 8.31 -92.71 -0.77 14.39 16 26 H 0.07 1.85 7.52 -2.39 -0.02 1.84 16 27 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.05 1.13 7.73 -2.38 -0.02 1.11 16 29 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.03 0.66 8.00 -2.39 -0.02 0.64 16 33 H 0.06 2.34 7.94 -2.38 -0.02 2.32 16 34 H 0.04 1.34 7.84 -2.38 -0.02 1.32 16 Total: -1.00 -63.88 268.49 2.09 -61.79 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: 1.03 Total: 5.02 kcal Atomic # 6 Polarization: -39.15 SS G_CDS: 3.79 Total: -35.36 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -4.76 Total: -78.31 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -63.88 2.09 -61.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260459766.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.442 kcal (2) G-P(sol) polarization free energy of solvation -63.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds