Wall clock time and date at job start Mon Mar 30 2020 01:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46969 * 2 1 4 4 C 1.52999 * 109.47141 * 119.99533 * 2 1 3 5 5 C 1.50694 * 109.47367 * 295.00162 * 4 2 1 6 6 H 1.08002 * 120.00044 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00188 * 180.02562 * 5 4 2 8 8 N 1.31508 * 119.99713 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00241 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46531 * 60.00373 * 9 7 5 11 11 H 1.48498 * 109.47044 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47163 * 300.00761 * 9 7 5 13 13 C 1.52998 * 109.47072 * 239.99943 * 2 1 3 14 14 H 1.08998 * 110.35291 * 299.31103 * 13 2 1 15 15 C 1.54593 * 110.30979 * 177.16714 * 13 2 1 16 16 C 1.54933 * 102.92591 * 219.12709 * 15 13 2 17 17 N 1.48538 * 103.22579 * 37.41127 * 16 15 13 18 18 C 1.46897 * 111.00123 * 200.28130 * 17 16 15 19 19 C 1.47899 * 105.82096 * 320.79703 * 17 16 15 20 20 H 1.08994 * 109.47286 * 59.99966 * 1 2 3 21 21 H 1.08998 * 109.46882 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47013 * 300.00014 * 1 2 3 23 23 H 1.08993 * 109.47041 * 55.00441 * 4 2 1 24 24 H 1.09000 * 109.47150 * 175.00301 * 4 2 1 25 25 H 0.97004 * 120.00091 * 179.97438 * 8 7 5 26 26 H 1.09007 * 110.72450 * 337.48700 * 15 13 2 27 27 H 1.09004 * 110.72461 * 100.76623 * 15 13 2 28 28 H 1.09007 * 110.66620 * 278.98326 * 16 15 13 29 29 H 1.08993 * 110.81619 * 155.91514 * 16 15 13 30 30 H 1.09001 * 109.47168 * 177.39602 * 18 17 16 31 31 H 1.09004 * 109.47072 * 297.39935 * 18 17 16 32 32 H 1.09008 * 109.47276 * 57.39760 * 18 17 16 33 33 H 1.09004 * 109.91646 * 265.97786 * 19 17 16 34 34 H 1.09001 * 110.08341 * 144.77463 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6414 0.0572 2.4766 6 1 1.0807 0.9747 2.3756 7 6 1.9933 -0.4015 3.7283 8 7 2.6773 -1.5179 3.8511 9 14 1.4997 0.5637 5.2496 10 1 0.0197 0.6701 5.3096 11 1 1.9957 -0.1358 6.4620 12 1 2.0917 1.9240 5.1864 13 6 2.0400 -0.7213 -1.2492 14 1 1.6947 -1.7551 -1.2576 15 6 3.5841 -0.6708 -1.3052 16 6 3.8692 -0.4461 -2.8114 17 7 2.7793 0.4722 -3.2302 18 6 2.5845 0.4287 -4.6856 19 6 1.5675 0.0104 -2.5192 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.6055 -1.7196 1.2952 24 1 3.1263 -0.7993 1.2057 25 1 2.9253 -1.8405 4.7317 26 1 3.9646 0.1610 -0.7123 27 1 4.0133 -1.6143 -0.9679 28 1 3.8108 -1.3871 -3.3585 29 1 4.8430 0.0216 -2.9557 30 1 1.7507 1.0750 -4.9600 31 1 3.4907 0.7733 -5.1839 32 1 2.3676 -0.5944 -4.9928 33 1 1.0028 -0.6733 -3.1532 34 1 0.9456 0.8632 -2.2468 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260459774.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:48 Heat of formation + Delta-G solvation = -19.068872 kcal Electronic energy + Delta-G solvation = -12907.349608 eV Core-core repulsion = 10839.173324 eV Total energy + Delta-G solvation = -2068.176284 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.93293 -35.09810 -32.39954 -30.62889 -28.39472 -26.47817 -25.50405 -23.27155 -20.83845 -20.61828 -18.75977 -16.31909 -15.59779 -15.27306 -14.41959 -14.08269 -13.49077 -13.18310 -12.74559 -12.39876 -11.98993 -11.89090 -11.56266 -11.27535 -11.11481 -10.89882 -10.80893 -10.66114 -10.38978 -10.20194 -9.88064 -9.59611 -8.99925 -8.85679 -8.27940 -8.25254 -5.93551 -3.94368 3.36920 3.41147 3.43845 4.25374 4.51006 5.02993 5.08304 5.30015 5.42228 5.49421 5.52348 5.55862 5.80576 5.85112 5.97644 6.03021 6.16221 6.26239 6.30918 6.44933 6.51929 6.65897 6.77943 7.02122 7.13351 7.20140 7.22161 7.30026 7.76076 7.92711 8.07742 8.51717 9.12174 9.68689 11.17856 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.064377 B = 0.007812 C = 0.007391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.834255 B = 3583.548895 C = 3787.633756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.076 4.076 3 H 0.060 0.940 4 C 0.028 3.972 5 C -0.514 4.514 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C -0.092 4.092 14 H 0.066 0.934 15 C -0.114 4.114 16 C 0.032 3.968 17 N -0.524 5.524 18 C 0.017 3.983 19 C 0.039 3.961 20 H 0.032 0.968 21 H 0.042 0.958 22 H 0.060 0.940 23 H 0.013 0.987 24 H 0.018 0.982 25 H 0.259 0.741 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.023 0.977 33 H 0.035 0.965 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.402 1.586 -12.720 12.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.095 4.095 3 H 0.078 0.922 4 C -0.009 4.009 5 C -0.552 4.552 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.111 4.111 14 H 0.085 0.915 15 C -0.152 4.152 16 C -0.095 4.095 17 N -0.248 5.248 18 C -0.132 4.132 19 C -0.089 4.089 20 H 0.051 0.949 21 H 0.061 0.939 22 H 0.080 0.920 23 H 0.031 0.969 24 H 0.036 0.964 25 H 0.069 0.931 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.210 2.011 -12.471 12.634 hybrid contribution -0.465 -0.432 0.623 0.889 sum -0.675 1.579 -11.849 11.973 Atomic orbital electron populations 1.21777 0.96651 1.00623 1.00144 1.21241 0.94689 0.99195 0.94343 0.92199 1.19140 0.96302 0.95210 0.90252 1.21249 1.34563 1.08237 0.91158 0.92727 1.25009 0.95378 0.95084 0.99022 1.69954 1.39097 1.21295 1.23397 0.86715 0.78849 0.80181 0.82595 1.20340 1.21400 1.20304 1.22099 0.95102 0.99085 0.94786 0.91524 1.22523 0.95992 1.02495 0.94151 1.23287 0.95406 0.94116 0.96721 1.64727 1.05527 1.49080 1.05468 1.22487 1.01888 0.99601 0.89200 1.23058 0.92141 0.98802 0.94856 0.94936 0.93872 0.92048 0.96913 0.96354 0.93102 0.90205 0.91201 0.94383 0.90553 0.91681 0.91705 0.95849 0.94711 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 8.77 37.16 0.33 -2.25 16 2 C -0.08 -1.57 1.63 -90.62 -0.15 -1.72 16 3 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 4 C 0.03 0.72 4.33 -27.89 -0.12 0.60 16 5 C -0.51 -14.50 8.41 -34.44 -0.29 -14.79 16 6 H 0.05 1.50 7.06 -52.49 -0.37 1.13 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 9 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C -0.09 -1.61 2.57 -89.26 -0.23 -1.84 16 14 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 15 C -0.11 -1.92 5.51 -24.87 -0.14 -2.05 16 16 C 0.03 0.46 6.56 -1.90 -0.01 0.45 16 17 N -0.52 -7.79 5.55 -238.71 -1.33 -9.11 16 18 C 0.02 0.20 9.40 60.06 0.56 0.77 16 19 C 0.04 0.60 5.87 -2.75 -0.02 0.59 16 20 H 0.03 0.53 6.54 -51.93 -0.34 0.19 16 21 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 23 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 24 H 0.02 0.49 7.11 -51.93 -0.37 0.12 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.08 1.47 7.75 -51.92 -0.40 1.07 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.04 0.51 7.96 -51.93 -0.41 0.09 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.02 0.26 8.00 -51.92 -0.42 -0.16 16 33 H 0.03 0.50 7.73 -51.93 -0.40 0.09 16 34 H 0.08 1.29 6.37 -51.93 -0.33 0.96 16 LS Contribution 267.12 15.07 4.03 4.03 Total: -1.00 -29.70 267.12 -7.67 -37.36 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -5.92 Total: -3.96 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -0.16 Total: -18.75 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: -0.59 Total: -35.54 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.70 -7.67 -37.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260459774.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.292 kcal (2) G-P(sol) polarization free energy of solvation -29.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds