Wall clock time and date at job start Mon Mar 30 2020 01:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46969 * 2 1 4 4 C 1.52999 * 109.47141 * 119.99533 * 2 1 3 5 5 C 1.50694 * 109.47367 * 295.00162 * 4 2 1 6 6 H 1.08002 * 120.00044 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00188 * 180.02562 * 5 4 2 8 8 N 1.31508 * 119.99713 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00241 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46531 * 60.00373 * 9 7 5 11 11 H 1.48498 * 109.47044 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47163 * 300.00761 * 9 7 5 13 13 C 1.52998 * 109.47072 * 239.99943 * 2 1 3 14 14 H 1.08998 * 110.35291 * 299.31103 * 13 2 1 15 15 C 1.54593 * 110.30979 * 177.16714 * 13 2 1 16 16 C 1.54933 * 102.92591 * 219.12709 * 15 13 2 17 17 N 1.48538 * 103.22579 * 37.41127 * 16 15 13 18 18 C 1.46897 * 111.00123 * 200.28130 * 17 16 15 19 19 C 1.47899 * 105.82096 * 320.79703 * 17 16 15 20 20 H 1.08994 * 109.47286 * 59.99966 * 1 2 3 21 21 H 1.08998 * 109.46882 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47013 * 300.00014 * 1 2 3 23 23 H 1.08993 * 109.47041 * 55.00441 * 4 2 1 24 24 H 1.09000 * 109.47150 * 175.00301 * 4 2 1 25 25 H 0.97004 * 120.00091 * 179.97438 * 8 7 5 26 26 H 1.09007 * 110.72450 * 337.48700 * 15 13 2 27 27 H 1.09004 * 110.72461 * 100.76623 * 15 13 2 28 28 H 1.09007 * 110.66620 * 278.98326 * 16 15 13 29 29 H 1.08993 * 110.81619 * 155.91514 * 16 15 13 30 30 H 1.09001 * 109.47168 * 177.39602 * 18 17 16 31 31 H 1.09004 * 109.47072 * 297.39935 * 18 17 16 32 32 H 1.09008 * 109.47276 * 57.39760 * 18 17 16 33 33 H 1.09004 * 109.91646 * 265.97786 * 19 17 16 34 34 H 1.09001 * 110.08341 * 144.77463 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6414 0.0572 2.4766 6 1 1.0807 0.9747 2.3756 7 6 1.9933 -0.4015 3.7283 8 7 2.6773 -1.5179 3.8511 9 14 1.4997 0.5637 5.2496 10 1 0.0197 0.6701 5.3096 11 1 1.9957 -0.1358 6.4620 12 1 2.0917 1.9240 5.1864 13 6 2.0400 -0.7213 -1.2492 14 1 1.6947 -1.7551 -1.2576 15 6 3.5841 -0.6708 -1.3052 16 6 3.8692 -0.4461 -2.8114 17 7 2.7793 0.4722 -3.2302 18 6 2.5845 0.4287 -4.6856 19 6 1.5675 0.0104 -2.5192 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.6055 -1.7196 1.2952 24 1 3.1263 -0.7993 1.2057 25 1 2.9253 -1.8405 4.7317 26 1 3.9646 0.1610 -0.7123 27 1 4.0133 -1.6143 -0.9679 28 1 3.8108 -1.3871 -3.3585 29 1 4.8430 0.0216 -2.9557 30 1 1.7507 1.0750 -4.9600 31 1 3.4907 0.7733 -5.1839 32 1 2.3676 -0.5944 -4.9928 33 1 1.0028 -0.6733 -3.1532 34 1 0.9456 0.8632 -2.2468 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260459774.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:47 Heat of formation + Delta-G solvation = -37.963109 kcal Electronic energy + Delta-G solvation = -12908.168924 eV Core-core repulsion = 10839.173324 eV Total energy + Delta-G solvation = -2068.995600 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.23459 -36.72956 -34.42612 -31.98711 -29.98673 -28.17252 -26.77252 -25.06711 -22.36774 -21.89862 -20.34170 -18.45285 -16.96097 -16.55758 -16.34422 -15.32940 -14.93071 -14.69463 -14.25190 -13.98130 -13.54048 -13.34141 -13.09507 -12.87916 -12.73474 -12.52326 -12.26393 -12.13295 -12.09182 -11.80370 -11.57234 -11.30946 -10.92974 -10.72543 -10.49848 -9.34132 -8.15561 -6.24413 1.40083 1.42837 1.50449 2.43147 3.16107 3.17626 3.76639 3.84527 3.95947 4.36510 4.44999 4.48325 4.54155 4.62820 4.69862 4.75746 4.81254 4.89308 5.01236 5.01760 5.11743 5.23357 5.28491 5.37585 5.47266 5.51809 5.60672 5.85622 5.91300 5.99993 6.17228 6.33641 6.92010 7.43469 8.96082 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.064377 B = 0.007812 C = 0.007391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.834255 B = 3583.548895 C = 3787.633756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.067 4.067 3 H 0.049 0.951 4 C 0.035 3.965 5 C -0.532 4.532 6 H 0.058 0.942 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.269 1.269 13 C -0.091 4.091 14 H 0.064 0.936 15 C -0.117 4.117 16 C 0.042 3.958 17 N -0.541 5.541 18 C 0.016 3.984 19 C 0.047 3.953 20 H 0.066 0.934 21 H 0.042 0.958 22 H 0.042 0.958 23 H -0.015 1.015 24 H -0.007 1.007 25 H 0.261 0.739 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.032 0.968 33 H 0.052 0.948 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.073 2.463 -13.914 14.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.086 4.086 3 H 0.067 0.933 4 C -0.002 4.002 5 C -0.570 4.570 6 H 0.076 0.924 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.783 3.217 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.194 1.194 13 C -0.110 4.110 14 H 0.082 0.918 15 C -0.155 4.155 16 C -0.086 4.086 17 N -0.265 5.265 18 C -0.132 4.132 19 C -0.080 4.080 20 H 0.085 0.915 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.004 0.996 24 H 0.012 0.988 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.887 2.898 -13.684 14.016 hybrid contribution -0.226 -0.725 0.976 1.237 sum -1.113 2.174 -12.708 12.940 Atomic orbital electron populations 1.21705 0.95164 1.00823 1.00909 1.21060 0.95883 0.98088 0.93560 0.93261 1.19012 0.94596 0.94172 0.92395 1.21673 1.34414 1.08538 0.92354 0.92361 1.25927 0.95301 0.96090 1.02548 1.70091 1.40282 1.22982 1.24254 0.85599 0.78931 0.78802 0.78325 1.19232 1.20970 1.19377 1.22017 0.95540 0.98821 0.94612 0.91783 1.22477 0.95570 1.01249 0.96251 1.23223 0.95974 0.94996 0.94373 1.64719 1.05106 1.49272 1.07442 1.22563 1.03062 1.00466 0.87084 1.22924 0.92607 0.98677 0.93814 0.91539 0.93932 0.93856 0.99630 0.98835 0.92990 0.92487 0.91859 0.92895 0.89365 0.90726 0.90387 0.94988 0.92949 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 8.77 71.98 0.63 -4.19 16 2 C -0.07 -2.80 1.63 -10.79 -0.02 -2.82 16 3 H 0.05 2.14 8.13 -2.39 -0.02 2.12 16 4 C 0.04 1.88 4.33 29.85 0.13 2.00 16 5 C -0.53 -30.58 8.41 25.60 0.22 -30.36 16 6 H 0.06 3.23 7.06 -2.91 -0.02 3.21 16 7 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 8 N -0.94 -57.84 13.29 21.45 0.28 -57.55 16 9 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 13 C -0.09 -3.15 2.57 -9.92 -0.03 -3.18 16 14 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 15 C -0.12 -3.98 5.51 31.80 0.18 -3.80 16 16 C 0.04 1.12 6.56 86.65 0.57 1.69 16 17 N -0.54 -14.71 5.55 -909.14 -5.05 -19.76 16 18 C 0.02 0.33 9.40 127.69 1.20 1.53 16 19 C 0.05 1.36 5.87 86.45 0.51 1.86 16 20 H 0.07 2.02 6.54 -2.39 -0.02 2.01 16 21 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.04 1.75 6.95 -2.39 -0.02 1.73 16 23 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 24 H -0.01 -0.38 7.11 -2.39 -0.02 -0.40 16 25 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 26 H 0.06 2.16 7.75 -2.38 -0.02 2.14 16 27 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 28 H 0.05 1.27 7.96 -2.38 -0.02 1.25 16 29 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.03 0.60 8.00 -2.38 -0.02 0.58 16 33 H 0.05 1.32 7.73 -2.39 -0.02 1.31 16 34 H 0.08 2.30 6.37 -2.39 -0.02 2.29 16 Total: -1.00 -63.86 267.12 2.14 -61.71 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: 1.03 Total: 5.39 kcal Atomic # 6 Polarization: -40.74 SS G_CDS: 3.85 Total: -36.89 kcal Atomic # 7 Polarization: -72.55 SS G_CDS: -4.76 Total: -77.31 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -63.86 2.14 -61.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260459774.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.751 kcal (2) G-P(sol) polarization free energy of solvation -63.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds