Wall clock time and date at job start Mon Mar 30 2020 02:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.36520 * 1 3 3 C 1.41132 * 120.00047 * 2 1 4 4 H 1.07994 * 120.00065 * 153.69570 * 3 2 1 5 5 C 1.39834 * 119.99553 * 333.69592 * 3 2 1 6 6 N 1.30886 * 120.00063 * 340.14878 * 5 3 2 7 7 Si 1.86802 * 119.99678 * 160.15695 * 5 3 2 8 8 H 1.48506 * 109.47124 * 84.99567 * 7 5 3 9 9 H 1.48500 * 109.46932 * 204.99052 * 7 5 3 10 10 H 1.48499 * 109.46942 * 324.99001 * 7 5 3 11 11 C 1.47780 * 119.99860 * 179.97438 * 2 1 3 12 12 C 1.36000 * 125.91998 * 65.00781 * 11 2 1 13 13 C 1.40854 * 106.75545 * 180.02562 * 12 11 2 14 14 C 1.34964 * 107.02505 * 359.97438 * 13 12 11 15 15 Cl 1.73592 * 125.67634 * 179.97438 * 14 13 12 16 16 O 1.34266 * 108.64981 * 359.97438 * 14 13 12 17 17 H 1.07995 * 120.00167 * 354.23649 * 1 2 3 18 18 H 1.08001 * 119.99761 * 174.23120 * 1 2 3 19 19 H 0.96999 * 119.99921 * 180.02562 * 6 5 3 20 20 H 1.08000 * 126.61876 * 0.27896 * 12 11 2 21 21 H 1.07998 * 126.48638 * 180.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3652 0.0000 0.0000 3 6 2.0709 1.2222 0.0000 4 1 3.0669 1.2707 0.4144 5 6 1.4802 2.3705 -0.5367 6 7 0.4760 2.2619 -1.3691 7 14 2.1246 4.0594 -0.0657 8 1 3.2715 4.4132 -0.9402 9 1 1.0453 5.0655 -0.2336 10 1 2.5691 4.0421 1.3511 11 6 2.1041 -1.2798 0.0006 12 6 2.1000 -2.2039 -0.9973 13 6 2.9339 -3.2586 -0.5774 14 6 3.4024 -2.9294 0.6447 15 17 4.4766 -3.8923 1.6103 16 8 2.8994 -1.7332 0.9895 17 1 -0.5400 0.9305 0.0939 18 1 -0.5400 -0.9306 -0.0940 19 1 0.0666 3.0584 -1.7416 20 1 1.5643 -2.1394 -1.9328 21 1 3.1569 -4.1596 -1.1294 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260560385.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:59 Heat of formation + Delta-G solvation = 6.270711 kcal Electronic energy + Delta-G solvation = -10026.555631 eV Core-core repulsion = 7894.969373 eV Total energy + Delta-G solvation = -2131.586258 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 198.019 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.44707 -37.95827 -36.69495 -34.13833 -33.07051 -29.10992 -27.20298 -23.40290 -22.62270 -21.03645 -19.09401 -17.78373 -17.23138 -16.99149 -15.62236 -14.50364 -14.37585 -14.24627 -13.87186 -13.48802 -13.11400 -12.83259 -12.54049 -12.32986 -12.19384 -11.73215 -11.14844 -10.88040 -9.88418 -9.07009 -8.62036 -6.37890 0.20031 0.55880 1.26443 1.38966 1.50365 1.57689 1.90013 2.24304 2.66215 3.15628 4.00210 4.17521 4.63044 4.88412 4.97962 5.15884 5.34012 5.45476 5.89317 6.01278 6.08224 6.63124 6.90579 7.00034 8.40495 Molecular weight = 198.02amu Principal moments of inertia in cm(-1) A = 0.058927 B = 0.009139 C = 0.008313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.048694 B = 3063.215416 C = 3367.550845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.328 4.328 2 C 0.070 3.930 3 C -0.500 4.500 4 H 0.062 0.938 5 C 0.037 3.963 6 N -0.822 5.822 7 Si 0.977 3.023 8 H -0.261 1.261 9 H -0.263 1.263 10 H -0.263 1.263 11 C 0.060 3.940 12 C -0.223 4.223 13 C -0.155 4.155 14 C -0.020 4.020 15 Cl 0.034 6.966 16 O -0.189 6.189 17 H 0.082 0.918 18 H 0.061 0.939 19 H 0.287 0.713 20 H 0.159 0.841 21 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.240 -6.518 1.499 8.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.369 4.369 2 C 0.068 3.932 3 C -0.530 4.530 4 H 0.080 0.920 5 C -0.177 4.177 6 N -0.448 5.448 7 Si 0.798 3.202 8 H -0.186 1.186 9 H -0.187 1.187 10 H -0.187 1.187 11 C 0.010 3.990 12 C -0.242 4.242 13 C -0.175 4.175 14 C -0.095 4.095 15 Cl 0.063 6.937 16 O -0.087 6.087 17 H 0.101 0.899 18 H 0.080 0.920 19 H 0.097 0.903 20 H 0.177 0.823 21 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 5.253 -6.356 1.698 8.418 hybrid contribution 0.190 0.529 0.084 0.568 sum 5.443 -5.826 1.782 8.170 Atomic orbital electron populations 1.23473 0.92899 0.98052 1.22437 1.17170 0.92043 0.86417 0.97537 1.19430 1.02421 0.93759 1.37361 0.91984 1.26564 0.94612 1.04531 0.92005 1.69921 1.20887 1.32947 1.21082 0.85299 0.78994 0.76129 0.79786 1.18552 1.18720 1.18699 1.22259 0.93235 0.96555 0.86970 1.21896 1.06178 0.94651 1.01478 1.21689 1.00007 1.01959 0.93801 1.22794 1.03585 0.87756 0.95362 1.98368 1.60012 1.63472 1.71881 1.84038 1.50971 1.30727 1.43002 0.89941 0.92007 0.90285 0.82327 0.79083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.33 -18.09 13.06 67.42 0.88 -17.21 14 2 C 0.07 3.91 5.55 -20.44 -0.11 3.79 14 3 C -0.50 -28.27 9.04 23.37 0.21 -28.06 14 4 H 0.06 3.47 7.92 -2.91 -0.02 3.45 14 5 C 0.04 1.96 5.02 85.22 0.43 2.39 14 6 N -0.82 -44.40 11.30 21.81 0.25 -44.15 14 7 Si 0.98 39.76 29.60 68.60 2.03 41.79 14 8 H -0.26 -10.14 7.11 99.48 0.71 -9.44 14 9 H -0.26 -10.02 7.11 99.48 0.71 -9.31 14 10 H -0.26 -10.64 7.11 99.48 0.71 -9.93 14 11 C 0.06 2.96 6.64 24.28 0.16 3.13 14 12 C -0.22 -9.32 10.85 22.39 0.24 -9.08 14 13 C -0.15 -5.32 10.86 22.16 0.24 -5.08 14 14 C -0.02 -0.73 7.93 67.07 0.53 -0.20 14 15 Cl 0.03 0.97 29.30 -2.72 -0.08 0.89 14 16 O -0.19 -8.75 10.67 -6.65 -0.07 -8.82 14 17 H 0.08 4.76 6.51 -2.91 -0.02 4.74 14 18 H 0.06 3.19 8.06 -2.91 -0.02 3.16 14 19 H 0.29 13.94 8.30 -92.71 -0.77 13.17 14 20 H 0.16 6.23 8.06 -2.91 -0.02 6.21 14 21 H 0.19 4.80 8.06 -2.91 -0.02 4.77 14 Total: -1.00 -59.74 218.03 5.95 -53.79 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: 1.24 Total: 6.83 kcal Atomic # 6 Polarization: -52.90 SS G_CDS: 2.58 Total: -50.32 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 0.25 Total: -44.15 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.07 Total: -8.82 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.79 kcal Atomic # 17 Polarization: 0.97 SS G_CDS: -0.08 Total: 0.89 kcal Total: -59.74 5.95 -53.79 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260560385.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.058 kcal (2) G-P(sol) polarization free energy of solvation -59.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds