Wall clock time and date at job start Mon Mar 30 2020 01:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46787 * 2 1 4 4 C 1.50703 * 109.47125 * 240.00450 * 2 1 3 5 5 H 1.08001 * 120.00175 * 239.99780 * 4 2 1 6 6 C 1.37877 * 119.99832 * 59.99648 * 4 2 1 7 7 N 1.31512 * 120.00205 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99604 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47422 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47212 * 120.00014 * 8 6 4 11 11 H 1.48496 * 109.47140 * 239.99747 * 8 6 4 12 12 C 1.52999 * 109.47509 * 120.00249 * 2 1 3 13 13 H 1.09002 * 109.50363 * 59.99984 * 12 2 1 14 14 C 1.53119 * 109.50349 * 299.92191 * 12 2 1 15 15 C 1.53115 * 109.16284 * 182.36387 * 14 12 2 16 16 C 1.53040 * 109.27691 * 57.65464 * 15 14 12 17 17 N 1.46843 * 109.52392 * 300.82256 * 16 15 14 18 18 C 1.46900 * 111.00190 * 185.84009 * 17 16 15 19 19 C 1.46846 * 111.20060 * 61.74295 * 17 16 15 20 20 H 1.09001 * 109.46787 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47085 * 299.99725 * 1 2 3 22 22 H 1.08994 * 109.47596 * 60.00097 * 1 2 3 23 23 H 0.97004 * 119.99930 * 179.97438 * 7 6 4 24 24 H 1.09003 * 109.52152 * 302.27160 * 14 12 2 25 25 H 1.08999 * 109.52204 * 62.39215 * 14 12 2 26 26 H 1.09001 * 109.50414 * 177.59756 * 15 14 12 27 27 H 1.09001 * 109.50181 * 297.67450 * 15 14 12 28 28 H 1.08997 * 109.46185 * 60.83867 * 16 15 14 29 29 H 1.08996 * 109.46026 * 180.80323 * 16 15 14 30 30 H 1.09008 * 109.46813 * 56.04478 * 18 17 16 31 31 H 1.08999 * 109.47285 * 176.04551 * 18 17 16 32 32 H 1.09003 * 109.47153 * 296.04811 * 18 17 16 33 33 H 1.08996 * 109.46322 * 178.24672 * 19 17 16 34 34 H 1.08991 * 109.46240 * 58.27106 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9434 0.8303 -2.6033 8 14 2.3213 -1.1201 -4.0080 9 1 3.1465 -2.2868 -3.6039 10 1 1.1660 -1.5865 -4.8162 11 1 3.1464 -0.1871 -4.8166 12 6 2.0401 -0.7213 1.2492 13 1 1.6771 -1.7491 1.2497 14 6 1.5317 0.0010 2.4999 15 6 2.0947 -0.6917 3.7440 16 6 3.6235 -0.6912 3.6744 17 7 4.0597 -1.3941 2.4612 18 6 5.5216 -1.5343 2.4308 19 6 3.5705 -0.7199 1.2518 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 0.7094 1.1620 -3.4844 24 1 1.8621 1.0396 2.4804 25 1 0.4426 -0.0343 2.5236 26 1 1.7708 -0.1563 4.6365 27 1 1.7319 -1.7188 3.7841 28 1 3.9855 0.3366 3.6486 29 1 4.0271 -1.1963 4.5518 30 1 5.8569 -2.0409 3.3359 31 1 5.8125 -2.1191 1.5582 32 1 5.9803 -0.5470 2.3759 33 1 3.9356 -1.2460 0.3698 34 1 3.9327 0.3080 1.2374 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260561849.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:08 Heat of formation + Delta-G solvation = -36.384055 kcal Electronic energy + Delta-G solvation = -13241.987584 eV Core-core repulsion = 11173.060457 eV Total energy + Delta-G solvation = -2068.927127 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.08597 -36.61065 -34.29558 -32.76291 -29.94353 -27.82337 -26.87971 -24.31721 -23.53136 -21.36104 -20.38556 -18.27998 -16.91409 -16.31232 -15.98140 -15.42633 -14.96256 -14.93486 -14.30707 -13.91613 -13.58280 -13.34290 -13.12478 -12.86279 -12.77316 -12.46926 -12.25431 -12.11101 -11.80553 -11.76650 -11.47282 -11.24288 -10.68292 -10.52607 -10.37574 -9.20785 -8.05286 -6.17663 1.39385 1.41771 1.52777 2.44837 3.09445 3.23855 4.03552 4.08063 4.11499 4.32427 4.51558 4.59715 4.68917 4.73330 4.78982 4.90390 4.93565 4.99039 5.00773 5.09439 5.20477 5.26055 5.33421 5.39005 5.51870 5.55723 5.67506 6.03572 6.18539 6.21306 6.30512 6.44434 6.93949 7.49976 8.99561 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.041186 B = 0.010958 C = 0.009051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.684124 B = 2554.675387 C = 3092.673655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.046 3.954 3 H -0.010 1.010 4 C -0.519 4.519 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.920 5.920 8 Si 0.949 3.051 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.282 1.282 12 C -0.064 4.064 13 H 0.051 0.949 14 C -0.115 4.115 15 C -0.110 4.110 16 C 0.055 3.945 17 N -0.557 5.557 18 C 0.026 3.974 19 C 0.081 3.919 20 H 0.024 0.976 21 H 0.033 0.967 22 H 0.051 0.949 23 H 0.258 0.742 24 H 0.045 0.955 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.025 0.975 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.021 0.979 33 H 0.060 0.940 34 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.840 -2.949 10.898 12.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.027 3.973 3 H 0.008 0.992 4 C -0.558 4.558 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.775 3.225 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.208 1.208 12 C -0.083 4.083 13 H 0.070 0.930 14 C -0.153 4.153 15 C -0.147 4.147 16 C -0.072 4.072 17 N -0.282 5.282 18 C -0.122 4.122 19 C -0.047 4.047 20 H 0.043 0.957 21 H 0.052 0.948 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.043 0.957 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 4.579 -3.315 10.784 12.176 hybrid contribution 0.498 0.684 -1.359 1.601 sum 5.078 -2.631 9.425 11.024 Atomic orbital electron populations 1.21666 0.98458 0.98637 0.99672 1.18638 0.92805 0.93812 0.92016 0.99159 1.21588 1.30375 1.11999 0.91795 0.92892 1.25728 0.95538 0.95778 1.01832 1.70038 1.38133 1.24330 1.23563 0.85646 0.78161 0.78794 0.79916 1.19154 1.20763 1.20846 1.21057 0.93709 0.98741 0.94785 0.93034 1.21676 1.00452 0.98457 0.94713 1.21579 0.94471 1.01232 0.97461 1.22162 0.96327 0.96127 0.92617 1.61984 1.11964 1.51683 1.02571 1.22384 0.86511 1.00019 1.03286 1.21878 0.95949 0.94998 0.91832 0.95711 0.94808 0.93052 0.93254 0.93633 0.91805 0.89571 0.91517 0.95667 0.88922 0.89459 0.91873 0.96023 0.92201 0.97118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.26 8.62 71.98 0.62 -5.64 16 2 C 0.05 2.36 1.90 -11.54 -0.02 2.34 16 3 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 4 C -0.52 -28.92 7.85 25.60 0.20 -28.72 16 5 H 0.05 2.92 6.72 -2.91 -0.02 2.91 16 6 C 0.01 0.51 5.30 84.65 0.45 0.96 16 7 N -0.92 -54.27 11.32 21.45 0.24 -54.03 16 8 Si 0.95 44.48 29.54 68.60 2.03 46.50 16 9 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 12 C -0.06 -2.70 1.89 -10.74 -0.02 -2.72 16 13 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 14 C -0.12 -4.03 4.86 30.67 0.15 -3.88 16 15 C -0.11 -3.02 6.09 30.65 0.19 -2.83 16 16 C 0.06 1.51 5.46 86.33 0.47 1.98 16 17 N -0.56 -18.12 4.91 -922.60 -4.53 -22.65 16 18 C 0.03 0.69 9.59 127.69 1.22 1.91 16 19 C 0.08 3.25 4.48 86.33 0.39 3.63 16 20 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 21 H 0.03 1.45 6.49 -2.39 -0.02 1.44 16 22 H 0.05 2.83 6.07 -2.39 -0.01 2.81 16 23 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 24 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.06 2.18 6.57 -2.39 -0.02 2.17 16 26 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16 27 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.09 2.03 8.09 -2.39 -0.02 2.01 16 30 H 0.09 1.84 8.10 -2.38 -0.02 1.82 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 2.63 6.64 -2.39 -0.02 2.61 16 34 H 0.01 0.44 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -60.63 261.54 2.42 -58.21 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: 1.04 Total: 4.93 kcal Atomic # 6 Polarization: -36.61 SS G_CDS: 3.65 Total: -32.96 kcal Atomic # 7 Polarization: -72.39 SS G_CDS: -4.29 Total: -76.68 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -60.63 2.42 -58.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260561849.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.826 kcal (2) G-P(sol) polarization free energy of solvation -60.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds