Wall clock time and date at job start Mon Mar 30 2020 01:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47654 * 2 1 4 4 C 1.52995 * 109.47356 * 120.00968 * 2 1 3 5 5 C 1.50699 * 109.46923 * 294.24041 * 4 2 1 6 6 H 1.07997 * 120.00339 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00232 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99702 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00074 * 179.97438 * 7 5 4 10 10 H 1.48510 * 109.46908 * 89.99697 * 9 7 5 11 11 H 1.48500 * 109.47021 * 209.99545 * 9 7 5 12 12 H 1.48492 * 109.47223 * 329.99762 * 9 7 5 13 13 C 1.53009 * 109.46869 * 240.00538 * 2 1 3 14 14 H 1.08998 * 109.87904 * 196.43213 * 13 2 1 15 15 C 1.54319 * 110.02211 * 317.54877 * 13 2 1 16 16 C 1.55433 * 103.04721 * 141.76486 * 15 13 2 17 17 C 1.54908 * 101.51687 * 324.36537 * 16 15 13 18 18 N 1.47442 * 109.88631 * 75.39639 * 13 2 1 19 19 C 1.46895 * 111.00281 * 3.68897 * 18 13 2 20 20 H 1.08994 * 109.47748 * 82.27901 * 1 2 3 21 21 H 1.09000 * 109.47604 * 202.28754 * 1 2 3 22 22 H 1.09008 * 109.46737 * 322.28387 * 1 2 3 23 23 H 1.09002 * 109.47511 * 54.23736 * 4 2 1 24 24 H 1.08998 * 109.47556 * 174.23916 * 4 2 1 25 25 H 0.97002 * 119.99927 * 180.02562 * 8 7 5 26 26 H 1.09000 * 110.70731 * 260.14827 * 15 13 2 27 27 H 1.09007 * 110.70913 * 23.20519 * 15 13 2 28 28 H 1.09001 * 111.10232 * 206.29559 * 16 15 13 29 29 H 1.08999 * 111.00015 * 82.39032 * 16 15 13 30 30 H 1.09007 * 110.37124 * 278.17697 * 17 16 15 31 31 H 1.09000 * 110.37037 * 155.95074 * 17 16 15 32 32 H 1.08992 * 109.47500 * 294.41002 * 19 18 13 33 33 H 1.09006 * 109.46660 * 54.40623 * 19 18 13 34 34 H 1.08996 * 109.47282 * 174.40180 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6575 0.0663 2.4755 6 1 1.1061 0.9894 2.3742 7 6 2.0123 -0.3908 3.7270 8 7 2.6841 -1.5147 3.8504 9 14 1.5387 0.5860 5.2471 10 1 0.2095 0.1343 5.7316 11 1 2.5527 0.3697 6.3102 12 1 1.4773 2.0304 4.9081 13 6 2.0399 -0.7212 -1.2494 14 1 3.0904 -0.9832 -1.1233 15 6 1.2074 -1.9961 -1.5004 16 6 1.0774 -2.0311 -3.0489 17 6 0.9671 -0.5227 -3.3842 18 7 1.8775 0.1462 -2.4306 19 6 1.3604 1.4666 -2.0471 20 1 -0.3634 0.1381 -1.0182 21 1 -0.3634 -0.9509 0.3897 22 1 -0.3633 0.8130 0.6287 23 1 1.5949 -1.7150 1.3021 24 1 3.1251 -0.8116 1.1990 25 1 2.9334 -1.8365 4.7308 26 1 1.7349 -2.8784 -1.1381 27 1 0.2270 -1.9149 -1.0307 28 1 0.1785 -2.5660 -3.3553 29 1 1.9651 -2.4687 -3.5056 30 1 -0.0560 -0.1757 -3.2393 31 1 1.2883 -0.3374 -4.4092 32 1 0.3495 1.3607 -1.6535 33 1 2.0044 1.9008 -1.2822 34 1 1.3438 2.1181 -2.9207 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260689648.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:25 Heat of formation + Delta-G solvation = 2.091513 kcal Electronic energy + Delta-G solvation = -13263.485345 eV Core-core repulsion = 11196.226645 eV Total energy + Delta-G solvation = -2067.258701 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.53016 -34.30131 -32.13131 -31.66410 -27.76305 -27.04444 -25.06954 -23.60270 -21.37394 -20.52846 -17.91668 -16.38297 -15.83287 -15.11803 -14.50409 -14.26924 -13.86755 -13.26182 -12.67003 -12.18635 -12.03399 -11.48808 -11.38468 -11.15586 -10.99741 -10.84951 -10.82717 -10.71925 -10.42443 -10.23825 -10.05316 -9.52086 -9.23061 -8.92633 -8.32095 -7.77138 -5.97092 -3.98604 3.32357 3.38908 3.41996 4.40983 4.48720 4.99753 5.08996 5.31282 5.38460 5.57814 5.68975 5.78114 5.86174 5.94267 5.98393 6.00960 6.17567 6.22112 6.30017 6.37757 6.43368 6.55419 6.70204 6.96599 7.04604 7.13904 7.45022 7.52659 7.70447 7.86382 8.02890 8.46671 9.07887 9.64878 11.14119 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.059876 B = 0.008935 C = 0.008355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.518467 B = 3132.888958 C = 3350.471971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.107 4.107 3 H 0.071 0.929 4 C 0.032 3.968 5 C -0.514 4.514 6 H 0.054 0.946 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.075 3.925 14 H 0.080 0.920 15 C -0.140 4.140 16 C -0.131 4.131 17 C 0.042 3.958 18 N -0.532 5.532 19 C 0.004 3.996 20 H 0.036 0.964 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.016 0.984 24 H 0.015 0.985 25 H 0.259 0.741 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.979 1.330 -11.343 12.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.126 4.126 3 H 0.089 0.911 4 C -0.006 4.006 5 C -0.552 4.552 6 H 0.072 0.928 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 C -0.033 4.033 14 H 0.099 0.901 15 C -0.179 4.179 16 C -0.169 4.169 17 C -0.086 4.086 18 N -0.256 5.256 19 C -0.144 4.144 20 H 0.055 0.945 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.034 0.966 24 H 0.033 0.967 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.409 1.313 -11.451 12.019 hybrid contribution -0.981 0.358 1.376 1.728 sum -4.390 1.671 -10.075 11.116 Atomic orbital electron populations 1.21990 0.96658 1.01747 0.98560 1.21840 0.94991 1.00270 0.95529 0.91131 1.19130 0.96074 0.95308 0.90082 1.21241 1.35142 1.07699 0.91152 0.92809 1.25017 0.95328 0.95107 0.99053 1.69964 1.39269 1.20945 1.23347 0.86648 0.78146 0.80490 0.83039 1.20791 1.21267 1.19953 1.22578 0.99840 0.91643 0.89230 0.90147 1.23039 1.01555 0.98593 0.94670 1.22745 1.01452 0.95843 0.96853 1.23021 0.94785 0.93796 0.97011 1.63732 1.45429 1.03182 1.13215 1.22866 0.99886 0.91216 1.00399 0.94532 0.92856 0.93078 0.96561 0.96702 0.93100 0.91150 0.90361 0.91521 0.91192 0.94110 0.91175 0.93663 0.90552 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 6.42 37.15 0.24 -2.25 16 2 C -0.11 -2.19 1.62 -90.62 -0.15 -2.34 16 3 H 0.07 1.48 5.45 -51.93 -0.28 1.19 16 4 C 0.03 0.81 4.24 -27.89 -0.12 0.69 16 5 C -0.51 -14.41 8.62 -34.44 -0.30 -14.71 16 6 H 0.05 1.47 7.34 -52.49 -0.39 1.09 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 9 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.07 1.35 3.12 -66.72 -0.21 1.14 16 14 H 0.08 1.57 7.98 -51.93 -0.41 1.16 16 15 C -0.14 -2.28 5.93 -24.75 -0.15 -2.43 16 16 C -0.13 -1.75 7.10 -24.43 -0.17 -1.92 16 17 C 0.04 0.58 6.38 -2.30 -0.01 0.56 16 18 N -0.53 -8.65 5.41 -231.57 -1.25 -9.90 16 19 C 0.00 0.07 8.16 60.06 0.49 0.56 16 20 H 0.04 0.60 4.76 -51.93 -0.25 0.35 16 21 H 0.05 1.04 6.81 -51.93 -0.35 0.69 16 22 H 0.05 0.98 7.78 -51.92 -0.40 0.58 16 23 H 0.02 0.44 7.88 -51.93 -0.41 0.03 16 24 H 0.01 0.41 8.05 -51.93 -0.42 -0.01 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.08 1.31 5.30 -51.93 -0.28 1.03 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.04 0.55 7.26 -51.93 -0.38 0.17 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.69 4.52 -51.93 -0.23 0.46 16 33 H 0.08 1.24 6.10 -51.93 -0.32 0.92 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 254.87 15.07 3.84 3.84 Total: -1.00 -29.41 254.87 -7.54 -36.94 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -5.37 Total: -2.19 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -0.47 Total: -19.20 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.52 Total: -36.16 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.41 -7.54 -36.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260689648.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.035 kcal (2) G-P(sol) polarization free energy of solvation -29.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds