Wall clock time and date at job start Mon Mar 30 2020 01:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47654 * 2 1 4 4 C 1.52995 * 109.47356 * 120.00968 * 2 1 3 5 5 C 1.50699 * 109.46923 * 294.24041 * 4 2 1 6 6 H 1.07997 * 120.00339 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00232 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99702 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00074 * 179.97438 * 7 5 4 10 10 H 1.48510 * 109.46908 * 89.99697 * 9 7 5 11 11 H 1.48500 * 109.47021 * 209.99545 * 9 7 5 12 12 H 1.48492 * 109.47223 * 329.99762 * 9 7 5 13 13 C 1.53009 * 109.46869 * 240.00538 * 2 1 3 14 14 H 1.08998 * 109.87904 * 196.43213 * 13 2 1 15 15 C 1.54319 * 110.02211 * 317.54877 * 13 2 1 16 16 C 1.55433 * 103.04721 * 141.76486 * 15 13 2 17 17 C 1.54908 * 101.51687 * 324.36537 * 16 15 13 18 18 N 1.47442 * 109.88631 * 75.39639 * 13 2 1 19 19 C 1.46895 * 111.00281 * 3.68897 * 18 13 2 20 20 H 1.08994 * 109.47748 * 82.27901 * 1 2 3 21 21 H 1.09000 * 109.47604 * 202.28754 * 1 2 3 22 22 H 1.09008 * 109.46737 * 322.28387 * 1 2 3 23 23 H 1.09002 * 109.47511 * 54.23736 * 4 2 1 24 24 H 1.08998 * 109.47556 * 174.23916 * 4 2 1 25 25 H 0.97002 * 119.99927 * 180.02562 * 8 7 5 26 26 H 1.09000 * 110.70731 * 260.14827 * 15 13 2 27 27 H 1.09007 * 110.70913 * 23.20519 * 15 13 2 28 28 H 1.09001 * 111.10232 * 206.29559 * 16 15 13 29 29 H 1.08999 * 111.00015 * 82.39032 * 16 15 13 30 30 H 1.09007 * 110.37124 * 278.17697 * 17 16 15 31 31 H 1.09000 * 110.37037 * 155.95074 * 17 16 15 32 32 H 1.08992 * 109.47500 * 294.41002 * 19 18 13 33 33 H 1.09006 * 109.46660 * 54.40623 * 19 18 13 34 34 H 1.08996 * 109.47282 * 174.40180 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6575 0.0663 2.4755 6 1 1.1061 0.9894 2.3742 7 6 2.0123 -0.3908 3.7270 8 7 2.6841 -1.5147 3.8504 9 14 1.5387 0.5860 5.2471 10 1 0.2095 0.1343 5.7316 11 1 2.5527 0.3697 6.3102 12 1 1.4773 2.0304 4.9081 13 6 2.0399 -0.7212 -1.2494 14 1 3.0904 -0.9832 -1.1233 15 6 1.2074 -1.9961 -1.5004 16 6 1.0774 -2.0311 -3.0489 17 6 0.9671 -0.5227 -3.3842 18 7 1.8775 0.1462 -2.4306 19 6 1.3604 1.4666 -2.0471 20 1 -0.3634 0.1381 -1.0182 21 1 -0.3634 -0.9509 0.3897 22 1 -0.3633 0.8130 0.6287 23 1 1.5949 -1.7150 1.3021 24 1 3.1251 -0.8116 1.1990 25 1 2.9334 -1.8365 4.7308 26 1 1.7349 -2.8784 -1.1381 27 1 0.2270 -1.9149 -1.0307 28 1 0.1785 -2.5660 -3.3553 29 1 1.9651 -2.4687 -3.5056 30 1 -0.0560 -0.1757 -3.2393 31 1 1.2883 -0.3374 -4.4092 32 1 0.3495 1.3607 -1.6535 33 1 2.0044 1.9008 -1.2822 34 1 1.3438 2.1181 -2.9207 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260689648.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:25 Heat of formation + Delta-G solvation = -16.862274 kcal Electronic energy + Delta-G solvation = -13264.307243 eV Core-core repulsion = 11196.226645 eV Total energy + Delta-G solvation = -2068.080599 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.90261 -36.08832 -34.03749 -32.97515 -29.45987 -28.67193 -26.39510 -25.44117 -22.96911 -21.78613 -19.47723 -18.50132 -17.17039 -16.53670 -16.38531 -15.82477 -15.20580 -14.62085 -14.37585 -14.03662 -13.41550 -13.25708 -12.90285 -12.83493 -12.58612 -12.33310 -12.29694 -12.09287 -11.96249 -11.90243 -11.56619 -11.23395 -11.09442 -10.82376 -10.52910 -9.08344 -8.17884 -6.27879 1.38499 1.39583 1.50459 2.40678 3.14833 3.17322 3.79896 3.84326 4.00379 4.30649 4.33157 4.40832 4.53413 4.66773 4.70803 4.71883 4.83773 4.97996 5.03661 5.06851 5.13454 5.18844 5.27815 5.35298 5.39858 5.47121 5.54546 5.77464 5.87311 6.14185 6.25045 6.30184 6.88375 7.40567 8.93628 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.059876 B = 0.008935 C = 0.008355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.518467 B = 3132.888958 C = 3350.471971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.098 4.098 3 H 0.066 0.934 4 C 0.039 3.961 5 C -0.530 4.530 6 H 0.059 0.941 7 C -0.002 4.002 8 N -0.934 5.934 9 Si 0.960 3.040 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.078 3.922 14 H 0.055 0.945 15 C -0.143 4.143 16 C -0.121 4.121 17 C 0.040 3.960 18 N -0.540 5.540 19 C 0.005 3.995 20 H 0.066 0.934 21 H 0.041 0.959 22 H 0.044 0.956 23 H -0.008 1.008 24 H -0.019 1.019 25 H 0.262 0.738 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.335 2.279 -12.418 13.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.117 4.117 3 H 0.084 0.916 4 C 0.002 3.998 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.200 4.200 8 N -0.575 5.575 9 Si 0.785 3.215 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.188 1.188 13 C -0.031 4.031 14 H 0.073 0.927 15 C -0.181 4.181 16 C -0.158 4.158 17 C -0.087 4.087 18 N -0.264 5.264 19 C -0.143 4.143 20 H 0.084 0.916 21 H 0.060 0.940 22 H 0.064 0.936 23 H 0.011 0.989 24 H -0.001 1.001 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.775 2.271 -12.546 13.615 hybrid contribution -0.519 0.051 1.676 1.755 sum -5.294 2.322 -10.870 12.312 Atomic orbital electron populations 1.21877 0.94945 1.00842 1.00186 1.21677 0.96285 0.99434 0.94277 0.91612 1.18987 0.93803 0.94605 0.92415 1.21640 1.34977 1.07995 0.92204 0.92296 1.25955 0.95216 0.96153 1.02631 1.70104 1.40446 1.22682 1.24251 0.85518 0.78008 0.79272 0.78690 1.19837 1.20917 1.18822 1.22365 0.98688 0.92803 0.89195 0.92654 1.23012 1.00641 0.97094 0.97396 1.22738 1.02967 0.96181 0.93947 1.23152 0.94842 0.93533 0.97172 1.63717 1.46961 1.03368 1.12349 1.22862 0.99304 0.90997 1.01109 0.91587 0.94034 0.93643 0.98938 1.00084 0.92951 0.92240 0.90730 0.89033 0.90667 0.93074 0.89132 0.93535 0.92211 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.47 6.42 71.98 0.46 -4.01 16 2 C -0.10 -4.04 1.62 -10.79 -0.02 -4.06 16 3 H 0.07 2.78 5.45 -2.39 -0.01 2.77 16 4 C 0.04 2.11 4.24 29.85 0.13 2.23 16 5 C -0.53 -30.25 8.62 25.60 0.22 -30.03 16 6 H 0.06 3.23 7.34 -2.91 -0.02 3.21 16 7 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 8 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16 9 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 13 C 0.08 2.82 3.12 45.26 0.14 2.96 16 14 H 0.06 2.26 7.98 -2.39 -0.02 2.24 16 15 C -0.14 -4.56 5.93 31.88 0.19 -4.37 16 16 C -0.12 -2.89 7.10 32.08 0.23 -2.66 16 17 C 0.04 0.97 6.38 86.77 0.55 1.53 16 18 N -0.54 -16.58 5.41 -886.55 -4.80 -21.38 16 19 C 0.01 0.14 8.16 127.69 1.04 1.19 16 20 H 0.07 2.02 4.76 -2.39 -0.01 2.01 16 21 H 0.04 1.61 6.81 -2.39 -0.02 1.59 16 22 H 0.04 1.69 7.78 -2.38 -0.02 1.67 16 23 H -0.01 -0.44 7.88 -2.39 -0.02 -0.46 16 24 H -0.02 -1.14 8.05 -2.39 -0.02 -1.16 16 25 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 26 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.07 2.43 5.30 -2.38 -0.01 2.41 16 28 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.05 1.15 7.26 -2.38 -0.02 1.14 16 31 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 1.30 4.52 -2.39 -0.01 1.29 16 33 H 0.06 1.89 6.10 -2.38 -0.01 1.87 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -63.61 254.87 1.98 -61.63 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 1.06 Total: 7.18 kcal Atomic # 6 Polarization: -40.29 SS G_CDS: 3.41 Total: -36.89 kcal Atomic # 7 Polarization: -74.25 SS G_CDS: -4.51 Total: -78.76 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -63.61 1.98 -61.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260689648.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.768 kcal (2) G-P(sol) polarization free energy of solvation -63.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds