Wall clock time and date at job start Mon Mar 30 2020 02:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46905 * 109.47214 * 2 1 4 4 C 1.46901 * 111.00014 * 184.28978 * 3 2 1 5 5 H 1.08997 * 109.47576 * 39.09049 * 4 3 2 6 6 C 1.50704 * 109.46911 * 159.09815 * 4 3 2 7 7 H 1.08001 * 119.99785 * 116.44293 * 6 4 3 8 8 C 1.37874 * 119.99809 * 296.43659 * 6 4 3 9 9 N 1.31515 * 120.00048 * 170.35415 * 8 6 4 10 10 Si 1.86803 * 119.99882 * 350.35671 * 8 6 4 11 11 H 1.48500 * 109.47070 * 270.66058 * 10 8 6 12 12 H 1.48495 * 109.47477 * 30.66302 * 10 8 6 13 13 H 1.48503 * 109.47010 * 150.66341 * 10 8 6 14 14 C 1.52998 * 109.46855 * 279.09487 * 4 3 2 15 15 C 1.54274 * 110.03302 * 297.12717 * 14 4 3 16 16 C 1.54967 * 104.16070 * 217.13856 * 15 14 4 17 17 C 1.54886 * 102.77735 * 37.88556 * 16 15 14 18 18 C 1.53872 * 110.03424 * 179.90927 * 14 4 3 19 19 H 1.09001 * 109.46949 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47250 * 299.99690 * 1 2 3 21 21 H 1.08994 * 109.47101 * 60.00083 * 1 2 3 22 22 H 1.09006 * 109.47469 * 240.00098 * 2 1 3 23 23 H 1.09003 * 109.47658 * 120.00008 * 2 1 3 24 24 H 1.00899 * 110.99379 * 308.24014 * 3 2 1 25 25 H 0.96996 * 119.99838 * 179.97438 * 9 8 6 26 26 H 1.08998 * 110.01790 * 58.51863 * 14 4 3 27 27 H 1.09000 * 110.48304 * 335.78564 * 15 14 4 28 28 H 1.08993 * 110.48693 * 98.42839 * 15 14 4 29 29 H 1.09006 * 110.71821 * 279.57170 * 16 15 14 30 30 H 1.08994 * 110.76575 * 156.22102 * 16 15 14 31 31 H 1.09000 * 110.48501 * 203.40583 * 17 16 15 32 32 H 1.09001 * 110.60284 * 80.82047 * 17 16 15 33 33 H 1.08993 * 110.03244 * 238.56820 * 18 14 4 34 34 H 1.09001 * 110.02799 * 359.95358 * 18 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4845 1.4255 -0.1026 5 1 3.8217 0.6546 -0.7955 6 6 3.9155 2.7784 -0.6076 7 1 4.5158 3.4222 0.0182 8 6 3.5435 3.1941 -1.8684 9 7 3.7531 4.4384 -2.2391 10 14 2.7417 1.9900 -3.0502 11 1 3.7916 1.3007 -3.8426 12 1 1.9627 0.9863 -2.2816 13 1 1.8334 2.7258 -3.9661 14 6 4.0993 1.1761 1.2761 15 6 3.6882 2.3004 2.2492 16 6 4.9492 2.5273 3.1209 17 6 6.1042 2.3599 2.1026 18 6 5.6348 1.2135 1.1831 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.5904 1.9202 -0.7399 25 1 3.4917 4.7308 -3.1262 26 1 3.7720 0.2105 1.6615 27 1 3.4363 3.2074 1.6997 28 1 2.8486 1.9821 2.8671 29 1 5.0151 1.7749 3.9069 30 1 4.9505 3.5314 3.5448 31 1 7.0268 2.0853 2.6139 32 1 6.2453 3.2758 1.5287 33 1 6.0526 0.2664 1.5242 34 1 5.9419 1.4084 0.1556 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260722673.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:05 Heat of formation + Delta-G solvation = -17.188642 kcal Electronic energy + Delta-G solvation = -13400.040080 eV Core-core repulsion = 11331.945329 eV Total energy + Delta-G solvation = -2068.094751 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.03346 -35.22542 -32.50379 -30.49431 -27.87917 -27.37157 -25.57765 -21.56789 -21.29001 -19.87130 -18.30183 -16.66411 -15.48512 -14.85614 -14.12607 -14.00212 -13.69625 -13.05393 -12.93603 -12.44141 -12.26268 -11.62257 -11.33078 -10.90570 -10.69442 -10.49065 -10.33926 -10.19038 -10.08206 -9.99269 -9.89130 -9.60944 -9.32740 -8.94195 -8.49508 -7.26669 -6.11920 -4.08116 3.20239 3.29339 3.33682 4.34345 5.01764 5.41898 5.52284 5.55963 5.64024 5.66191 5.83794 6.01946 6.20536 6.29908 6.35469 6.38855 6.45534 6.46089 6.56916 6.59578 6.64973 6.73112 6.81955 6.94552 7.05505 7.19258 7.27930 7.47774 7.68338 8.31022 8.46602 8.71325 8.99729 9.51061 11.00655 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.026780 B = 0.016681 C = 0.011795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.310411 B = 1678.119054 C = 2373.388305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.047 3.953 3 N -0.685 5.685 4 C 0.188 3.812 5 H -0.008 1.008 6 C -0.500 4.500 7 H 0.086 0.914 8 C 0.071 3.929 9 N -0.892 5.892 10 Si 0.860 3.140 11 H -0.282 1.282 12 H -0.257 1.257 13 H -0.288 1.288 14 C -0.063 4.063 15 C -0.098 4.098 16 C -0.128 4.128 17 C -0.117 4.117 18 C -0.113 4.113 19 H 0.047 0.953 20 H 0.059 0.941 21 H 0.046 0.954 22 H 0.015 0.985 23 H 0.060 0.940 24 H 0.334 0.666 25 H 0.263 0.737 26 H 0.040 0.960 27 H 0.088 0.912 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.040 0.960 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.192 -6.759 5.512 8.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.082 4.082 3 N -0.321 5.321 4 C 0.081 3.919 5 H 0.010 0.990 6 C -0.539 4.539 7 H 0.104 0.896 8 C -0.132 4.132 9 N -0.530 5.530 10 Si 0.688 3.312 11 H -0.208 1.208 12 H -0.182 1.182 13 H -0.214 1.214 14 C -0.083 4.083 15 C -0.135 4.135 16 C -0.166 4.166 17 C -0.155 4.155 18 C -0.151 4.151 19 H 0.066 0.934 20 H 0.078 0.922 21 H 0.065 0.935 22 H 0.033 0.967 23 H 0.078 0.922 24 H 0.155 0.845 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.106 0.894 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.222 -6.576 6.037 9.010 hybrid contribution -0.319 -0.878 -1.791 2.020 sum -1.541 -7.454 4.246 8.716 Atomic orbital electron populations 1.21773 0.96547 1.00372 1.01833 1.21931 0.94304 0.93000 0.99001 1.61153 1.08990 1.08943 1.52972 1.19552 0.83899 0.96560 0.91929 0.99049 1.21160 1.32596 1.00187 0.99911 0.89631 1.25054 0.95327 0.94636 0.98182 1.69924 1.47948 1.15142 1.19956 0.87317 0.79893 0.82245 0.81751 1.20798 1.18172 1.21413 1.21495 0.93571 0.96634 0.96550 1.22266 0.94813 1.00542 0.95917 1.22549 0.96899 0.99730 0.97415 1.22275 0.96642 0.99579 0.96979 1.22108 0.95981 0.96392 1.00632 0.93401 0.92181 0.93459 0.96734 0.92195 0.84480 0.92702 0.94188 0.89360 0.93599 0.93154 0.92784 0.93512 0.91373 0.94155 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 10.13 37.15 0.38 -1.98 16 2 C 0.05 0.89 5.56 -3.82 -0.02 0.87 16 3 N -0.69 -15.02 5.62 -107.95 -0.61 -15.63 16 4 C 0.19 4.34 1.08 -68.86 -0.07 4.26 16 5 H -0.01 -0.19 6.75 -51.93 -0.35 -0.54 16 6 C -0.50 -13.29 7.10 -34.44 -0.24 -13.54 16 7 H 0.09 2.45 6.31 -52.49 -0.33 2.12 16 8 C 0.07 1.95 5.28 -17.82 -0.09 1.86 16 9 N -0.89 -26.40 13.96 55.43 0.77 -25.63 16 10 Si 0.86 20.68 25.87 -169.99 -4.40 16.29 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.26 -5.80 4.17 56.52 0.24 -5.56 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 C -0.06 -1.29 2.81 -89.50 -0.25 -1.54 16 15 C -0.10 -1.93 5.74 -25.03 -0.14 -2.08 16 16 C -0.13 -2.20 6.91 -24.70 -0.17 -2.37 16 17 C -0.12 -2.08 6.59 -25.07 -0.17 -2.24 16 18 C -0.11 -2.16 5.89 -25.61 -0.15 -2.31 16 19 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 20 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.01 0.29 7.12 -51.93 -0.37 -0.08 16 23 H 0.06 1.07 7.29 -51.93 -0.38 0.70 16 24 H 0.33 7.76 5.30 -39.29 -0.21 7.55 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.04 0.78 7.28 -51.93 -0.38 0.40 16 27 H 0.09 2.02 6.28 -51.93 -0.33 1.69 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.32 7.80 -51.93 -0.41 0.91 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.58 7.11 -51.93 -0.37 1.21 16 LS Contribution 255.61 15.07 3.85 3.85 Total: -1.00 -27.83 255.61 -7.12 -34.95 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.80 Total: 5.23 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -0.94 Total: -19.06 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.17 Total: -41.26 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.40 Total: 16.29 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.83 -7.12 -34.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260722673.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.760 kcal (2) G-P(sol) polarization free energy of solvation -27.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds