Wall clock time and date at job start Mon Mar 30 2020 02:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46905 * 109.47214 * 2 1 4 4 C 1.46901 * 111.00014 * 184.28978 * 3 2 1 5 5 H 1.08997 * 109.47576 * 39.09049 * 4 3 2 6 6 C 1.50704 * 109.46911 * 159.09815 * 4 3 2 7 7 H 1.08001 * 119.99785 * 116.44293 * 6 4 3 8 8 C 1.37874 * 119.99809 * 296.43659 * 6 4 3 9 9 N 1.31515 * 120.00048 * 170.35415 * 8 6 4 10 10 Si 1.86803 * 119.99882 * 350.35671 * 8 6 4 11 11 H 1.48500 * 109.47070 * 270.66058 * 10 8 6 12 12 H 1.48495 * 109.47477 * 30.66302 * 10 8 6 13 13 H 1.48503 * 109.47010 * 150.66341 * 10 8 6 14 14 C 1.52998 * 109.46855 * 279.09487 * 4 3 2 15 15 C 1.54274 * 110.03302 * 297.12717 * 14 4 3 16 16 C 1.54967 * 104.16070 * 217.13856 * 15 14 4 17 17 C 1.54886 * 102.77735 * 37.88556 * 16 15 14 18 18 C 1.53872 * 110.03424 * 179.90927 * 14 4 3 19 19 H 1.09001 * 109.46949 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47250 * 299.99690 * 1 2 3 21 21 H 1.08994 * 109.47101 * 60.00083 * 1 2 3 22 22 H 1.09006 * 109.47469 * 240.00098 * 2 1 3 23 23 H 1.09003 * 109.47658 * 120.00008 * 2 1 3 24 24 H 1.00899 * 110.99379 * 308.24014 * 3 2 1 25 25 H 0.96996 * 119.99838 * 179.97438 * 9 8 6 26 26 H 1.08998 * 110.01790 * 58.51863 * 14 4 3 27 27 H 1.09000 * 110.48304 * 335.78564 * 15 14 4 28 28 H 1.08993 * 110.48693 * 98.42839 * 15 14 4 29 29 H 1.09006 * 110.71821 * 279.57170 * 16 15 14 30 30 H 1.08994 * 110.76575 * 156.22102 * 16 15 14 31 31 H 1.09000 * 110.48501 * 203.40583 * 17 16 15 32 32 H 1.09001 * 110.60284 * 80.82047 * 17 16 15 33 33 H 1.08993 * 110.03244 * 238.56820 * 18 14 4 34 34 H 1.09001 * 110.02799 * 359.95358 * 18 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4845 1.4255 -0.1026 5 1 3.8217 0.6546 -0.7955 6 6 3.9155 2.7784 -0.6076 7 1 4.5158 3.4222 0.0182 8 6 3.5435 3.1941 -1.8684 9 7 3.7531 4.4384 -2.2391 10 14 2.7417 1.9900 -3.0502 11 1 3.7916 1.3007 -3.8426 12 1 1.9627 0.9863 -2.2816 13 1 1.8334 2.7258 -3.9661 14 6 4.0993 1.1761 1.2761 15 6 3.6882 2.3004 2.2492 16 6 4.9492 2.5273 3.1209 17 6 6.1042 2.3599 2.1026 18 6 5.6348 1.2135 1.1831 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.5904 1.9202 -0.7399 25 1 3.4917 4.7308 -3.1262 26 1 3.7720 0.2105 1.6615 27 1 3.4363 3.2074 1.6997 28 1 2.8486 1.9821 2.8671 29 1 5.0151 1.7749 3.9069 30 1 4.9505 3.5314 3.5448 31 1 7.0268 2.0853 2.6139 32 1 6.2453 3.2758 1.5287 33 1 6.0526 0.2664 1.5242 34 1 5.9419 1.4084 0.1556 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260722673.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:05 Heat of formation + Delta-G solvation = -34.971206 kcal Electronic energy + Delta-G solvation = -13400.811190 eV Core-core repulsion = 11331.945329 eV Total energy + Delta-G solvation = -2068.865861 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.67654 -36.81847 -34.51189 -32.15034 -29.39171 -28.90378 -27.51391 -23.30765 -22.82068 -21.35122 -20.06918 -18.61314 -17.23395 -16.48227 -15.79194 -15.66561 -15.29283 -14.84361 -14.59946 -14.07580 -13.92556 -13.08920 -12.87446 -12.70766 -12.35609 -12.06876 -11.84102 -11.78318 -11.69289 -11.63197 -11.53717 -11.22588 -11.05804 -10.88166 -10.52787 -9.01274 -8.26816 -6.25839 1.26247 1.32669 1.37837 2.30165 3.02180 3.71339 4.02152 4.05314 4.15266 4.29534 4.44943 4.60391 4.74276 4.78085 4.88546 4.89825 4.99290 4.99773 5.05525 5.13691 5.19206 5.26016 5.32980 5.37198 5.44502 5.53166 5.64818 5.75967 5.91348 6.35151 6.62715 6.74678 6.91503 7.36010 8.89179 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.026780 B = 0.016681 C = 0.011795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.310411 B = 1678.119054 C = 2373.388305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.044 3.956 3 N -0.691 5.691 4 C 0.191 3.809 5 H -0.017 1.017 6 C -0.491 4.491 7 H 0.052 0.948 8 C 0.015 3.985 9 N -0.941 5.941 10 Si 0.923 3.077 11 H -0.286 1.286 12 H -0.234 1.234 13 H -0.289 1.289 14 C -0.065 4.065 15 C -0.095 4.095 16 C -0.119 4.119 17 C -0.116 4.116 18 C -0.113 4.113 19 H 0.076 0.924 20 H 0.063 0.937 21 H 0.041 0.959 22 H 0.009 0.991 23 H 0.073 0.927 24 H 0.324 0.676 25 H 0.263 0.737 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.845 -9.112 6.779 11.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 N -0.325 5.325 4 C 0.084 3.916 5 H 0.000 1.000 6 C -0.530 4.530 7 H 0.070 0.930 8 C -0.183 4.183 9 N -0.582 5.582 10 Si 0.749 3.251 11 H -0.212 1.212 12 H -0.158 1.158 13 H -0.216 1.216 14 C -0.084 4.084 15 C -0.133 4.133 16 C -0.157 4.157 17 C -0.154 4.154 18 C -0.151 4.151 19 H 0.095 0.905 20 H 0.082 0.918 21 H 0.060 0.940 22 H 0.027 0.973 23 H 0.091 0.909 24 H 0.144 0.856 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.882 -8.952 7.326 11.720 hybrid contribution -0.083 -0.136 -2.118 2.124 sum -1.965 -9.089 5.208 10.658 Atomic orbital electron populations 1.21739 0.94152 1.02311 1.01774 1.22074 0.96379 0.90755 0.99338 1.61084 1.07872 1.11076 1.52438 1.19474 0.84965 0.93836 0.93364 0.99994 1.21339 1.31154 1.01164 0.99345 0.93017 1.25793 0.96470 0.96036 1.00020 1.70067 1.50406 1.17270 1.20488 0.86297 0.78953 0.80387 0.79437 1.21218 1.15774 1.21558 1.21529 0.94299 0.97610 0.94969 1.22140 0.96629 0.98454 0.96044 1.22516 0.94687 1.01136 0.97333 1.22251 0.98427 0.97825 0.96856 1.22096 0.95302 0.98323 0.99396 0.90468 0.91842 0.93977 0.97286 0.90862 0.85616 0.92837 0.92331 0.93491 0.92557 0.90245 0.92153 0.90461 0.94325 0.91226 0.93681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.05 10.13 71.98 0.73 -3.32 16 2 C 0.04 1.52 5.56 86.30 0.48 2.00 16 3 N -0.69 -29.33 5.62 -495.43 -2.79 -32.12 16 4 C 0.19 8.74 1.08 44.17 0.05 8.79 16 5 H -0.02 -0.82 6.75 -2.39 -0.02 -0.84 16 6 C -0.49 -26.89 7.10 25.60 0.18 -26.71 16 7 H 0.05 3.13 6.31 -2.91 -0.02 3.11 16 8 C 0.01 0.83 5.28 84.65 0.45 1.27 16 9 N -0.94 -57.91 13.96 21.45 0.30 -57.62 16 10 Si 0.92 43.40 25.87 68.60 1.77 45.18 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.23 -9.99 4.17 99.48 0.41 -9.58 16 13 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 14 C -0.06 -2.55 2.81 -10.07 -0.03 -2.58 16 15 C -0.10 -3.65 5.74 31.70 0.18 -3.47 16 16 C -0.12 -3.81 6.91 31.91 0.22 -3.59 16 17 C -0.12 -3.96 6.59 31.67 0.21 -3.75 16 18 C -0.11 -4.16 5.89 31.32 0.18 -3.98 16 19 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 20 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 21 H 0.04 1.23 8.14 -2.39 -0.02 1.22 16 22 H 0.01 0.33 7.12 -2.38 -0.02 0.31 16 23 H 0.07 2.36 7.29 -2.39 -0.02 2.34 16 24 H 0.32 14.74 5.30 -89.69 -0.48 14.27 16 25 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 26 H 0.06 2.09 7.28 -2.39 -0.02 2.07 16 27 H 0.05 2.19 6.28 -2.39 -0.01 2.17 16 28 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.08 2.12 8.14 -2.38 -0.02 2.11 16 30 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.04 1.52 7.80 -2.39 -0.02 1.50 16 33 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.04 1.91 7.11 -2.39 -0.02 1.89 16 Total: -1.00 -61.19 255.61 2.23 -58.95 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.29 Total: 20.94 kcal Atomic # 6 Polarization: -37.99 SS G_CDS: 2.65 Total: -35.33 kcal Atomic # 7 Polarization: -87.25 SS G_CDS: -2.49 Total: -89.73 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.77 Total: 45.18 kcal Total: -61.19 2.23 -58.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260722673.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.983 kcal (2) G-P(sol) polarization free energy of solvation -61.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds