Wall clock time and date at job start Mon Mar 30 2020 02:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46903 * 109.46900 * 2 1 4 4 C 1.46901 * 110.99565 * 180.80350 * 3 2 1 5 5 H 1.08995 * 109.47547 * 16.05694 * 4 3 2 6 6 C 1.50704 * 109.47202 * 256.05559 * 4 3 2 7 7 H 1.07995 * 120.00075 * 354.82959 * 6 4 3 8 8 C 1.37878 * 119.99954 * 174.83324 * 6 4 3 9 9 N 1.31516 * 119.99956 * 352.89957 * 8 6 4 10 10 Si 1.86797 * 119.99857 * 172.89942 * 8 6 4 11 11 H 1.48494 * 109.47370 * 90.00311 * 10 8 6 12 12 H 1.48506 * 109.47102 * 209.99880 * 10 8 6 13 13 H 1.48499 * 109.47424 * 329.99569 * 10 8 6 14 14 C 1.53006 * 109.46800 * 136.05688 * 4 3 2 15 15 C 1.54275 * 110.02954 * 59.68359 * 14 4 3 16 16 C 1.54884 * 104.19307 * 217.10404 * 15 14 4 17 17 C 1.54893 * 102.75009 * 37.94367 * 16 15 14 18 18 C 1.53874 * 110.03302 * 302.51615 * 14 4 3 19 19 H 1.09000 * 109.46762 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.47145 * 299.99862 * 1 2 3 21 21 H 1.08994 * 109.47040 * 59.99859 * 1 2 3 22 22 H 1.09005 * 109.46941 * 119.99656 * 2 1 3 23 23 H 1.08994 * 109.47467 * 239.99851 * 2 1 3 24 24 H 1.00891 * 110.99789 * 304.75850 * 3 2 1 25 25 H 0.96996 * 120.00063 * 185.02811 * 9 8 6 26 26 H 1.09002 * 110.01614 * 181.12305 * 14 4 3 27 27 H 1.08995 * 110.48761 * 335.78047 * 15 14 4 28 28 H 1.09000 * 110.48515 * 98.42628 * 15 14 4 29 29 H 1.09003 * 110.76104 * 279.62823 * 16 15 14 30 30 H 1.09003 * 110.91518 * 156.33228 * 16 15 14 31 31 H 1.08999 * 110.48693 * 203.37860 * 17 16 15 32 32 H 1.08996 * 110.59787 * 80.78986 * 17 16 15 33 33 H 1.09000 * 110.02934 * 238.56584 * 18 14 4 34 34 H 1.08994 * 110.03088 * 0.02562 * 18 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4880 1.4242 -0.0192 5 1 3.8738 0.4481 -0.3131 6 6 3.9993 1.7734 1.3548 7 1 3.3042 2.0304 2.1404 8 6 5.3544 1.7650 1.6088 9 7 6.1915 1.3190 0.6977 10 14 6.0015 2.3869 3.2470 11 1 6.0651 1.2615 4.2136 12 1 7.3605 2.9552 3.0589 13 1 5.0934 3.4387 3.7709 14 6 3.9569 2.4808 -1.0217 15 6 3.4112 3.8674 -0.6219 16 6 3.0816 4.5496 -1.9728 17 6 2.5190 3.3801 -2.8182 18 6 3.3896 2.1710 -2.4181 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 1.8934 -0.5138 0.8901 23 1 1.8934 -0.5138 -0.8899 24 1 1.6339 1.9049 -0.7738 25 1 7.1367 1.2445 0.9024 26 1 5.0460 2.5036 -1.0577 27 1 2.5102 3.7630 -0.0175 28 1 4.1697 4.4349 -0.0829 29 1 3.9832 4.9577 -2.4297 30 1 2.3301 5.3284 -1.8423 31 1 2.6265 3.5921 -3.8820 32 1 1.4736 3.1961 -2.5705 33 1 4.2035 2.0444 -3.1320 34 1 2.7800 1.2682 -2.3815 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260722675.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:08 Heat of formation + Delta-G solvation = -22.682506 kcal Electronic energy + Delta-G solvation = -13357.401477 eV Core-core repulsion = 11289.068494 eV Total energy + Delta-G solvation = -2068.332983 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.14841 -34.72903 -32.66858 -30.15003 -27.89447 -27.16072 -25.41646 -21.81038 -21.15476 -19.82536 -18.29052 -16.19138 -15.23224 -14.88797 -14.30101 -13.97166 -13.67693 -12.90365 -12.60957 -12.32094 -12.07394 -11.33143 -11.09292 -10.95743 -10.67768 -10.58568 -10.50207 -10.39233 -10.19009 -9.94888 -9.81474 -9.50728 -9.21927 -8.98453 -8.27838 -7.12003 -5.90189 -3.91197 3.35940 3.42854 3.47939 4.50569 5.31537 5.37469 5.43622 5.49884 5.52874 5.71516 5.90715 6.10152 6.18577 6.24374 6.33561 6.38395 6.42079 6.50305 6.58826 6.64116 6.65784 6.73953 6.88168 7.01647 7.25328 7.39695 7.53250 7.70578 8.00283 8.36244 8.50425 8.83156 9.16506 9.72129 11.16296 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.027034 B = 0.014420 C = 0.010902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.482678 B = 1941.259794 C = 2567.779888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.060 3.940 3 N -0.686 5.686 4 C 0.221 3.779 5 H 0.015 0.985 6 C -0.484 4.484 7 H 0.061 0.939 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.889 3.111 11 H -0.284 1.284 12 H -0.289 1.289 13 H -0.274 1.274 14 C -0.091 4.091 15 C -0.098 4.098 16 C -0.130 4.130 17 C -0.121 4.121 18 C -0.128 4.128 19 H 0.047 0.953 20 H 0.058 0.942 21 H 0.044 0.956 22 H 0.068 0.932 23 H 0.011 0.989 24 H 0.319 0.681 25 H 0.258 0.742 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.564 1.828 -4.786 8.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.070 4.070 3 N -0.318 5.318 4 C 0.114 3.886 5 H 0.032 0.968 6 C -0.523 4.523 7 H 0.079 0.921 8 C -0.144 4.144 9 N -0.539 5.539 10 Si 0.717 3.283 11 H -0.210 1.210 12 H -0.215 1.215 13 H -0.199 1.199 14 C -0.111 4.111 15 C -0.136 4.136 16 C -0.167 4.167 17 C -0.159 4.159 18 C -0.166 4.166 19 H 0.066 0.934 20 H 0.077 0.923 21 H 0.063 0.937 22 H 0.086 0.914 23 H 0.030 0.970 24 H 0.137 0.863 25 H 0.068 0.932 26 H 0.106 0.894 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.396 1.918 -4.147 7.860 hybrid contribution 0.759 -0.050 -0.091 0.766 sum -5.637 1.868 -4.238 7.296 Atomic orbital electron populations 1.21789 0.96746 1.00376 1.01551 1.21851 0.93672 0.91887 0.99636 1.60774 1.11383 1.10809 1.48855 1.19185 0.81139 0.93757 0.94556 0.96770 1.21180 0.90839 1.44299 0.95998 0.92062 1.24956 0.97048 0.95879 0.96562 1.69922 1.03322 1.47134 1.33520 0.86635 0.78079 0.79252 0.84316 1.21019 1.21480 1.19855 1.22089 1.02020 0.95547 0.91402 1.22187 1.01008 0.95789 0.94606 1.22570 0.99442 0.96868 0.97844 1.22348 0.98993 0.96211 0.98328 1.22342 0.98301 0.96861 0.99060 0.93352 0.92251 0.93720 0.91387 0.97047 0.86316 0.93212 0.89395 0.91012 0.92838 0.92633 0.92879 0.93156 0.92394 0.93194 0.93305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 10.17 37.16 0.38 -1.87 16 2 C 0.06 1.14 6.13 -3.82 -0.02 1.12 16 3 N -0.69 -14.68 5.40 -107.94 -0.58 -15.26 16 4 C 0.22 5.47 1.60 -68.86 -0.11 5.36 16 5 H 0.01 0.40 7.55 -51.93 -0.39 0.01 16 6 C -0.48 -13.31 8.08 -34.44 -0.28 -13.59 16 7 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 8 C 0.06 1.55 5.25 -17.82 -0.09 1.46 16 9 N -0.90 -25.85 12.05 55.43 0.67 -25.18 16 10 Si 0.89 21.68 29.55 -169.99 -5.02 16.66 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 14 C -0.09 -2.05 2.60 -89.49 -0.23 -2.29 16 15 C -0.10 -2.03 5.35 -25.07 -0.13 -2.16 16 16 C -0.13 -2.19 6.91 -24.74 -0.17 -2.36 16 17 C -0.12 -1.95 6.47 -25.07 -0.16 -2.12 16 18 C -0.13 -2.43 5.70 -25.61 -0.15 -2.58 16 19 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 20 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 21 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 23 H 0.01 0.22 8.09 -51.93 -0.42 -0.20 16 24 H 0.32 6.30 5.53 -39.30 -0.22 6.08 16 25 H 0.26 7.14 8.32 -40.82 -0.34 6.80 16 26 H 0.09 2.29 6.85 -51.93 -0.36 1.93 16 27 H 0.07 1.53 6.95 -51.93 -0.36 1.17 16 28 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.88 7.68 -51.93 -0.40 0.48 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.93 7.02 -51.93 -0.36 0.56 16 LS Contribution 265.66 15.07 4.00 4.00 Total: -1.00 -27.90 265.66 -7.77 -35.67 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.86 Total: 3.13 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -0.97 Total: -19.02 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.08 Total: -40.44 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -27.90 -7.77 -35.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260722675.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.988 kcal (2) G-P(sol) polarization free energy of solvation -27.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds