Wall clock time and date at job start Mon Mar 30 2020 02:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46903 * 109.46900 * 2 1 4 4 C 1.46901 * 110.99565 * 180.80350 * 3 2 1 5 5 H 1.08995 * 109.47547 * 16.05694 * 4 3 2 6 6 C 1.50704 * 109.47202 * 256.05559 * 4 3 2 7 7 H 1.07995 * 120.00075 * 354.82959 * 6 4 3 8 8 C 1.37878 * 119.99954 * 174.83324 * 6 4 3 9 9 N 1.31516 * 119.99956 * 352.89957 * 8 6 4 10 10 Si 1.86797 * 119.99857 * 172.89942 * 8 6 4 11 11 H 1.48494 * 109.47370 * 90.00311 * 10 8 6 12 12 H 1.48506 * 109.47102 * 209.99880 * 10 8 6 13 13 H 1.48499 * 109.47424 * 329.99569 * 10 8 6 14 14 C 1.53006 * 109.46800 * 136.05688 * 4 3 2 15 15 C 1.54275 * 110.02954 * 59.68359 * 14 4 3 16 16 C 1.54884 * 104.19307 * 217.10404 * 15 14 4 17 17 C 1.54893 * 102.75009 * 37.94367 * 16 15 14 18 18 C 1.53874 * 110.03302 * 302.51615 * 14 4 3 19 19 H 1.09000 * 109.46762 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.47145 * 299.99862 * 1 2 3 21 21 H 1.08994 * 109.47040 * 59.99859 * 1 2 3 22 22 H 1.09005 * 109.46941 * 119.99656 * 2 1 3 23 23 H 1.08994 * 109.47467 * 239.99851 * 2 1 3 24 24 H 1.00891 * 110.99789 * 304.75850 * 3 2 1 25 25 H 0.96996 * 120.00063 * 185.02811 * 9 8 6 26 26 H 1.09002 * 110.01614 * 181.12305 * 14 4 3 27 27 H 1.08995 * 110.48761 * 335.78047 * 15 14 4 28 28 H 1.09000 * 110.48515 * 98.42628 * 15 14 4 29 29 H 1.09003 * 110.76104 * 279.62823 * 16 15 14 30 30 H 1.09003 * 110.91518 * 156.33228 * 16 15 14 31 31 H 1.08999 * 110.48693 * 203.37860 * 17 16 15 32 32 H 1.08996 * 110.59787 * 80.78986 * 17 16 15 33 33 H 1.09000 * 110.02934 * 238.56584 * 18 14 4 34 34 H 1.08994 * 110.03088 * 0.02562 * 18 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4880 1.4242 -0.0192 5 1 3.8738 0.4481 -0.3131 6 6 3.9993 1.7734 1.3548 7 1 3.3042 2.0304 2.1404 8 6 5.3544 1.7650 1.6088 9 7 6.1915 1.3190 0.6977 10 14 6.0015 2.3869 3.2470 11 1 6.0651 1.2615 4.2136 12 1 7.3605 2.9552 3.0589 13 1 5.0934 3.4387 3.7709 14 6 3.9569 2.4808 -1.0217 15 6 3.4112 3.8674 -0.6219 16 6 3.0816 4.5496 -1.9728 17 6 2.5190 3.3801 -2.8182 18 6 3.3896 2.1710 -2.4181 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 1.8934 -0.5138 0.8901 23 1 1.8934 -0.5138 -0.8899 24 1 1.6339 1.9049 -0.7738 25 1 7.1367 1.2445 0.9024 26 1 5.0460 2.5036 -1.0577 27 1 2.5102 3.7630 -0.0175 28 1 4.1697 4.4349 -0.0829 29 1 3.9832 4.9577 -2.4297 30 1 2.3301 5.3284 -1.8423 31 1 2.6265 3.5921 -3.8820 32 1 1.4736 3.1961 -2.5705 33 1 4.2035 2.0444 -3.1320 34 1 2.7800 1.2682 -2.3815 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260722675.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:08 Heat of formation + Delta-G solvation = -39.361558 kcal Electronic energy + Delta-G solvation = -13358.124735 eV Core-core repulsion = 11289.068494 eV Total energy + Delta-G solvation = -2069.056241 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.82780 -36.32264 -34.68490 -31.83890 -29.44319 -28.70223 -27.42124 -23.54397 -22.82239 -21.24757 -20.07894 -18.19285 -16.96931 -16.74085 -16.02776 -15.46190 -15.27235 -14.64865 -14.14120 -13.96125 -13.77833 -13.03486 -12.88938 -12.52934 -12.45265 -12.30076 -12.03637 -11.84840 -11.81577 -11.69264 -11.33149 -11.31560 -11.01468 -10.89455 -10.38417 -8.94162 -8.04143 -6.12858 1.39218 1.41308 1.51796 2.44902 3.21026 3.73933 3.96001 4.04085 4.08697 4.30983 4.51694 4.67047 4.72848 4.81550 4.85776 4.92477 4.98336 5.02476 5.11478 5.17983 5.21492 5.26646 5.33589 5.43838 5.57294 5.59092 5.74288 5.81883 5.88454 6.36820 6.61515 7.00061 7.06296 7.54781 9.00252 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.027034 B = 0.014420 C = 0.010902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.482678 B = 1941.259794 C = 2567.779888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.056 3.944 3 N -0.686 5.686 4 C 0.228 3.772 5 H -0.028 1.028 6 C -0.497 4.497 7 H 0.048 0.952 8 C 0.010 3.990 9 N -0.926 5.926 10 Si 0.947 3.053 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.269 1.269 14 C -0.091 4.091 15 C -0.096 4.096 16 C -0.120 4.120 17 C -0.111 4.111 18 C -0.124 4.124 19 H 0.071 0.929 20 H 0.057 0.943 21 H 0.061 0.939 22 H 0.044 0.956 23 H 0.010 0.990 24 H 0.331 0.669 25 H 0.258 0.742 26 H 0.046 0.954 27 H 0.064 0.936 28 H 0.030 0.970 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.201 2.793 -5.505 10.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.073 4.073 3 N -0.319 5.319 4 C 0.119 3.881 5 H -0.011 1.011 6 C -0.536 4.536 7 H 0.067 0.933 8 C -0.188 4.188 9 N -0.567 5.567 10 Si 0.774 3.226 11 H -0.205 1.205 12 H -0.211 1.211 13 H -0.193 1.193 14 C -0.111 4.111 15 C -0.133 4.133 16 C -0.158 4.158 17 C -0.148 4.148 18 C -0.162 4.162 19 H 0.090 0.910 20 H 0.076 0.924 21 H 0.080 0.920 22 H 0.062 0.938 23 H 0.028 0.972 24 H 0.150 0.850 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.054 2.884 -4.870 9.844 hybrid contribution 1.270 -0.410 0.149 1.343 sum -6.784 2.474 -4.720 8.627 Atomic orbital electron populations 1.21691 0.93051 1.02232 1.02262 1.21905 0.96657 0.90327 0.98444 1.60666 1.09244 1.12485 1.49502 1.18945 0.83096 0.92155 0.93864 1.01082 1.21419 0.90991 1.44137 0.97061 0.93328 1.25646 0.97316 0.96031 0.99768 1.70049 1.03397 1.48086 1.35151 0.85706 0.77496 0.78805 0.80608 1.20532 1.21110 1.19314 1.21918 0.99638 0.96232 0.93343 1.22093 0.99749 0.94725 0.96777 1.22520 1.00557 0.97561 0.95131 1.22316 0.98910 0.93768 0.99822 1.22260 0.98829 0.98470 0.96605 0.90994 0.92429 0.92030 0.93785 0.97169 0.84960 0.93312 0.93562 0.91685 0.95059 0.92209 0.90151 0.90336 0.90814 0.93213 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 10.17 71.98 0.73 -3.06 16 2 C 0.06 2.15 6.13 86.30 0.53 2.68 16 3 N -0.69 -29.29 5.40 -495.42 -2.68 -31.97 16 4 C 0.23 11.61 1.60 44.17 0.07 11.69 16 5 H -0.03 -1.67 7.55 -2.39 -0.02 -1.69 16 6 C -0.50 -28.15 8.08 25.60 0.21 -27.94 16 7 H 0.05 2.81 7.82 -2.91 -0.02 2.79 16 8 C 0.01 0.57 5.25 84.65 0.44 1.01 16 9 N -0.93 -55.08 12.05 21.45 0.26 -54.82 16 10 Si 0.95 45.27 29.55 68.60 2.03 47.29 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 13 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 14 C -0.09 -4.20 2.60 -10.06 -0.03 -4.23 16 15 C -0.10 -3.91 5.35 31.67 0.17 -3.74 16 16 C -0.12 -3.71 6.91 31.88 0.22 -3.49 16 17 C -0.11 -3.18 6.47 31.67 0.21 -2.97 16 18 C -0.12 -4.58 5.70 31.32 0.18 -4.40 16 19 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 20 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 21 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 23 H 0.01 0.39 8.09 -2.39 -0.02 0.37 16 24 H 0.33 12.60 5.53 -89.70 -0.50 12.10 16 25 H 0.26 14.68 8.32 -92.71 -0.77 13.91 16 26 H 0.05 2.50 6.85 -2.39 -0.02 2.49 16 27 H 0.06 2.72 6.95 -2.39 -0.02 2.71 16 28 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.07 1.92 7.68 -2.39 -0.02 1.90 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.05 1.73 7.02 -2.39 -0.02 1.71 16 Total: -1.00 -61.91 265.66 2.89 -59.02 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.55 Total: 14.95 kcal Atomic # 6 Polarization: -37.20 SS G_CDS: 2.73 Total: -34.47 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -2.42 Total: -86.79 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -61.91 2.89 -59.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260722675.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.654 kcal (2) G-P(sol) polarization free energy of solvation -61.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds