Wall clock time and date at job start Mon Mar 30 2020 01:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47296 * 2 1 4 4 N 1.46902 * 109.47451 * 120.00125 * 2 1 3 5 5 C 1.46901 * 111.00126 * 208.24670 * 4 2 1 6 6 H 1.09007 * 109.46983 * 50.32863 * 5 4 2 7 7 C 1.52997 * 109.47209 * 290.33378 * 5 4 2 8 8 C 1.50702 * 109.47372 * 170.32676 * 5 4 2 9 9 H 1.08004 * 119.99795 * 5.28281 * 8 5 4 10 10 C 1.37872 * 120.00285 * 185.27663 * 8 5 4 11 11 N 1.31515 * 119.99967 * 11.23992 * 10 8 5 12 12 Si 1.86798 * 119.99908 * 191.24504 * 10 8 5 13 13 H 1.48499 * 109.46913 * 269.99794 * 12 10 8 14 14 H 1.48495 * 109.47465 * 29.99602 * 12 10 8 15 15 H 1.48505 * 109.47059 * 150.00019 * 12 10 8 16 16 C 1.46895 * 111.00363 * 84.29239 * 4 2 1 17 17 C 1.52998 * 117.49610 * 351.23956 * 16 4 2 18 18 C 1.53006 * 117.49724 * 282.58363 * 16 4 2 19 19 H 1.08992 * 109.47341 * 53.00057 * 1 2 3 20 20 H 1.09005 * 109.46927 * 173.00722 * 1 2 3 21 21 H 1.09004 * 109.47304 * 292.99998 * 1 2 3 22 22 H 1.08998 * 109.47107 * 239.99972 * 2 1 3 23 23 H 1.09001 * 109.47113 * 188.42800 * 3 2 1 24 24 H 1.08999 * 109.46981 * 308.42694 * 3 2 1 25 25 H 1.08995 * 109.46831 * 68.42306 * 3 2 1 26 26 H 1.09010 * 109.46461 * 294.28404 * 7 5 4 27 27 H 1.08992 * 109.47455 * 54.28513 * 7 5 4 28 28 H 1.09002 * 109.47028 * 174.29281 * 7 5 4 29 29 H 0.97004 * 119.99924 * 357.70824 * 11 10 8 30 30 H 1.08999 * 115.55446 * 136.91369 * 16 4 2 31 31 H 1.09003 * 117.49966 * 0.02562 * 17 16 4 32 32 H 1.09011 * 117.49919 * 145.02081 * 17 16 4 33 33 H 1.09002 * 117.49555 * 214.97931 * 18 16 4 34 34 H 1.09001 * 117.49675 * 359.97438 * 18 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.3342 -0.1772 1.6050 6 1 3.2974 0.9110 1.6576 7 6 4.3873 -0.6029 0.5800 8 6 3.6963 -0.7335 2.9580 9 1 3.0592 -1.4683 3.4278 10 6 4.8408 -0.3047 3.5959 11 7 5.4968 0.7393 3.1383 12 14 5.4597 -1.2065 5.1102 13 1 4.8550 -0.6054 6.3260 14 1 5.0778 -2.6389 5.0239 15 1 6.9385 -1.0920 5.1846 16 6 2.0666 -2.1452 0.9864 17 6 1.4328 -2.6922 -0.2942 18 6 0.7446 -2.9124 1.0553 19 1 -0.3633 0.6184 -0.8207 20 1 -0.3633 -1.0201 -0.1251 21 1 -0.3634 0.4015 0.9460 22 1 1.8933 -0.5138 -0.8900 23 1 3.1195 1.4462 -0.1506 24 1 1.5589 1.9980 -0.8051 25 1 1.8048 1.9110 0.9556 26 1 4.4962 -1.6873 0.6000 27 1 4.0741 -0.2875 -0.4152 28 1 5.3419 -0.1373 0.8251 29 1 5.1943 1.1873 2.3328 30 1 2.9595 -2.6466 1.3599 31 1 0.9813 -1.9741 -0.9788 32 1 1.9085 -3.5537 -0.7631 33 1 0.7679 -3.9186 1.4738 34 1 -0.1598 -2.3392 1.2591 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261137489.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:06 Heat of formation + Delta-G solvation = 32.772625 kcal Electronic energy + Delta-G solvation = -13557.775977 eV Core-core repulsion = 11491.847709 eV Total energy + Delta-G solvation = -2065.928268 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.01226 -34.81308 -33.36933 -30.81408 -27.57271 -26.46598 -24.78044 -22.22650 -21.44682 -20.87773 -18.26308 -16.65340 -15.76332 -15.59648 -13.96646 -13.68273 -13.21308 -12.91955 -12.29399 -12.23897 -11.94450 -11.59446 -11.44134 -11.07104 -10.99303 -10.82220 -10.64224 -10.55000 -10.32041 -10.08038 -9.96717 -9.68423 -9.49484 -8.61582 -8.09803 -7.10980 -6.31170 -3.97640 3.46476 3.49771 3.65480 4.37428 4.56233 4.80973 5.38556 5.42450 5.46906 5.53360 5.57369 5.70820 5.95048 6.01560 6.07530 6.20035 6.26646 6.28763 6.40712 6.43007 6.55168 6.58278 6.67972 6.73669 6.79218 6.88897 7.17163 7.40338 7.94234 8.16800 8.44070 8.67759 8.95082 9.70695 11.06663 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.039349 B = 0.012488 C = 0.010726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.408355 B = 2241.637228 C = 2609.809815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 C -0.151 4.151 4 N -0.490 5.490 5 C 0.193 3.807 6 H 0.046 0.954 7 C -0.172 4.172 8 C -0.582 4.582 9 H 0.056 0.944 10 C 0.019 3.981 11 N -0.914 5.914 12 Si 1.069 2.931 13 H -0.289 1.289 14 H -0.289 1.289 15 H -0.286 1.286 16 C 0.055 3.945 17 C -0.231 4.231 18 C -0.184 4.184 19 H 0.046 0.954 20 H 0.055 0.945 21 H 0.060 0.940 22 H 0.043 0.957 23 H 0.060 0.940 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.041 0.959 27 H 0.018 0.982 28 H 0.055 0.945 29 H 0.269 0.731 30 H 0.116 0.884 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.679 -3.225 -6.161 9.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.039 4.039 3 C -0.209 4.209 4 N -0.212 5.212 5 C 0.086 3.914 6 H 0.063 0.937 7 C -0.231 4.231 8 C -0.621 4.621 9 H 0.074 0.926 10 C -0.184 4.184 11 N -0.551 5.551 12 Si 0.897 3.103 13 H -0.216 1.216 14 H -0.215 1.215 15 H -0.212 1.212 16 C -0.055 4.055 17 C -0.269 4.269 18 C -0.222 4.222 19 H 0.065 0.935 20 H 0.074 0.926 21 H 0.079 0.921 22 H 0.061 0.939 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.060 0.940 27 H 0.037 0.963 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.134 0.866 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.812 -3.081 -4.600 8.027 hybrid contribution -0.662 -0.249 -1.861 1.991 sum -6.473 -3.331 -6.461 9.734 Atomic orbital electron populations 1.22027 0.95728 1.01251 1.01326 1.21702 0.94922 0.94482 0.92836 1.22089 1.01334 0.95908 1.01522 1.62139 1.29105 1.00461 1.29461 1.19621 0.81687 0.96248 0.93823 0.93685 1.22568 1.02470 1.00631 0.97434 1.21918 1.09849 1.27289 1.03026 0.92568 1.25708 0.94150 0.95764 1.02812 1.70785 1.43199 1.17525 1.23577 0.83553 0.76209 0.75345 0.75154 1.21581 1.21538 1.21178 1.22545 0.95885 0.89908 0.97163 1.23532 1.07342 1.03751 0.92309 1.23075 0.98400 1.00984 0.99782 0.93533 0.92566 0.92099 0.93945 0.92096 0.93522 0.91769 0.94004 0.96268 0.92605 0.92026 0.86627 0.88402 0.89975 0.89723 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.55 37.15 0.32 -1.96 16 2 C 0.07 1.25 1.68 -67.71 -0.11 1.14 16 3 C -0.15 -2.70 7.75 37.16 0.29 -2.41 16 4 N -0.49 -10.52 4.49 -212.22 -0.95 -11.47 16 5 C 0.19 4.74 1.41 -68.86 -0.10 4.64 16 6 H 0.05 1.19 4.84 -51.93 -0.25 0.94 16 7 C -0.17 -3.99 7.82 37.16 0.29 -3.70 16 8 C -0.58 -16.12 7.77 -34.44 -0.27 -16.38 16 9 H 0.06 1.60 7.58 -52.48 -0.40 1.20 16 10 C 0.02 0.55 5.21 -17.82 -0.09 0.46 16 11 N -0.91 -27.07 13.12 55.43 0.73 -26.34 16 12 Si 1.07 25.30 29.92 -169.99 -5.09 20.21 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 16 C 0.06 1.09 4.47 -67.71 -0.30 0.79 16 17 C -0.23 -3.76 8.85 -26.70 -0.24 -4.00 16 18 C -0.18 -3.10 9.78 -26.69 -0.26 -3.36 16 19 H 0.05 0.62 8.10 -51.93 -0.42 0.20 16 20 H 0.06 0.84 4.75 -51.93 -0.25 0.59 16 21 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.04 0.77 5.78 -51.93 -0.30 0.47 16 23 H 0.06 1.16 5.68 -51.93 -0.30 0.86 16 24 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 25 H 0.06 1.23 7.55 -51.93 -0.39 0.84 16 26 H 0.04 0.96 6.66 -51.92 -0.35 0.62 16 27 H 0.02 0.39 6.23 -51.93 -0.32 0.07 16 28 H 0.05 1.40 6.60 -51.93 -0.34 1.05 16 29 H 0.27 7.88 6.07 -40.82 -0.25 7.63 16 30 H 0.12 2.54 6.33 -51.93 -0.33 2.21 16 31 H 0.10 1.54 4.71 -51.93 -0.24 1.29 16 32 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.09 1.53 6.71 -51.93 -0.35 1.19 16 LS Contribution 252.27 15.07 3.80 3.80 Total: -1.00 -28.70 252.27 -6.95 -35.66 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -4.97 Total: 2.93 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: -0.47 Total: -24.79 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: -0.23 Total: -37.81 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.09 Total: 20.21 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.70 -6.95 -35.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137489.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.431 kcal (2) G-P(sol) polarization free energy of solvation -28.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds