Wall clock time and date at job start Mon Mar 30 2020 01:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47296 * 2 1 4 4 N 1.46902 * 109.47451 * 120.00125 * 2 1 3 5 5 C 1.46901 * 111.00126 * 208.24670 * 4 2 1 6 6 H 1.09007 * 109.46983 * 50.32863 * 5 4 2 7 7 C 1.52997 * 109.47209 * 290.33378 * 5 4 2 8 8 C 1.50702 * 109.47372 * 170.32676 * 5 4 2 9 9 H 1.08004 * 119.99795 * 5.28281 * 8 5 4 10 10 C 1.37872 * 120.00285 * 185.27663 * 8 5 4 11 11 N 1.31515 * 119.99967 * 11.23992 * 10 8 5 12 12 Si 1.86798 * 119.99908 * 191.24504 * 10 8 5 13 13 H 1.48499 * 109.46913 * 269.99794 * 12 10 8 14 14 H 1.48495 * 109.47465 * 29.99602 * 12 10 8 15 15 H 1.48505 * 109.47059 * 150.00019 * 12 10 8 16 16 C 1.46895 * 111.00363 * 84.29239 * 4 2 1 17 17 C 1.52998 * 117.49610 * 351.23956 * 16 4 2 18 18 C 1.53006 * 117.49724 * 282.58363 * 16 4 2 19 19 H 1.08992 * 109.47341 * 53.00057 * 1 2 3 20 20 H 1.09005 * 109.46927 * 173.00722 * 1 2 3 21 21 H 1.09004 * 109.47304 * 292.99998 * 1 2 3 22 22 H 1.08998 * 109.47107 * 239.99972 * 2 1 3 23 23 H 1.09001 * 109.47113 * 188.42800 * 3 2 1 24 24 H 1.08999 * 109.46981 * 308.42694 * 3 2 1 25 25 H 1.08995 * 109.46831 * 68.42306 * 3 2 1 26 26 H 1.09010 * 109.46461 * 294.28404 * 7 5 4 27 27 H 1.08992 * 109.47455 * 54.28513 * 7 5 4 28 28 H 1.09002 * 109.47028 * 174.29281 * 7 5 4 29 29 H 0.97004 * 119.99924 * 357.70824 * 11 10 8 30 30 H 1.08999 * 115.55446 * 136.91369 * 16 4 2 31 31 H 1.09003 * 117.49966 * 0.02562 * 17 16 4 32 32 H 1.09011 * 117.49919 * 145.02081 * 17 16 4 33 33 H 1.09002 * 117.49555 * 214.97931 * 18 16 4 34 34 H 1.09001 * 117.49675 * 359.97438 * 18 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.3342 -0.1772 1.6050 6 1 3.2974 0.9110 1.6576 7 6 4.3873 -0.6029 0.5800 8 6 3.6963 -0.7335 2.9580 9 1 3.0592 -1.4683 3.4278 10 6 4.8408 -0.3047 3.5959 11 7 5.4968 0.7393 3.1383 12 14 5.4597 -1.2065 5.1102 13 1 4.8550 -0.6054 6.3260 14 1 5.0778 -2.6389 5.0239 15 1 6.9385 -1.0920 5.1846 16 6 2.0666 -2.1452 0.9864 17 6 1.4328 -2.6922 -0.2942 18 6 0.7446 -2.9124 1.0553 19 1 -0.3633 0.6184 -0.8207 20 1 -0.3633 -1.0201 -0.1251 21 1 -0.3634 0.4015 0.9460 22 1 1.8933 -0.5138 -0.8900 23 1 3.1195 1.4462 -0.1506 24 1 1.5589 1.9980 -0.8051 25 1 1.8048 1.9110 0.9556 26 1 4.4962 -1.6873 0.6000 27 1 4.0741 -0.2875 -0.4152 28 1 5.3419 -0.1373 0.8251 29 1 5.1943 1.1873 2.3328 30 1 2.9595 -2.6466 1.3599 31 1 0.9813 -1.9741 -0.9788 32 1 1.9085 -3.5537 -0.7631 33 1 0.7679 -3.9186 1.4738 34 1 -0.1598 -2.3392 1.2591 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261137489.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:05 Heat of formation + Delta-G solvation = 15.058394 kcal Electronic energy + Delta-G solvation = -13558.544123 eV Core-core repulsion = 11491.847709 eV Total energy + Delta-G solvation = -2066.696415 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.57084 -36.49686 -35.08559 -32.62369 -29.26298 -27.90040 -26.88461 -23.67282 -23.14497 -22.39558 -19.94935 -18.51135 -17.30714 -17.22806 -15.74977 -15.47525 -14.76190 -14.47458 -14.08204 -13.81402 -13.43174 -13.29598 -12.99165 -12.92977 -12.56669 -12.42690 -12.28671 -12.11594 -11.93646 -11.89983 -11.49368 -11.20341 -11.02136 -10.66562 -10.22194 -8.71664 -8.55127 -6.21492 1.53422 1.61506 1.79249 2.58390 2.95874 3.21193 3.33212 4.01104 4.05123 4.14344 4.16550 4.34435 4.51177 4.57444 4.64680 4.74640 4.76625 4.84391 4.90705 4.92734 4.95490 5.00137 5.15107 5.24253 5.28993 5.37219 5.48546 5.52148 6.02359 6.18973 6.58138 6.62961 6.86753 7.54164 8.83246 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.039349 B = 0.012488 C = 0.010726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.408355 B = 2241.637228 C = 2609.809815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.064 3.936 3 C -0.147 4.147 4 N -0.503 5.503 5 C 0.197 3.803 6 H 0.023 0.977 7 C -0.154 4.154 8 C -0.589 4.589 9 H 0.043 0.957 10 C -0.028 4.028 11 N -0.938 5.938 12 Si 1.111 2.889 13 H -0.278 1.278 14 H -0.275 1.275 15 H -0.284 1.284 16 C 0.017 3.983 17 C -0.203 4.203 18 C -0.170 4.170 19 H 0.074 0.926 20 H 0.065 0.935 21 H 0.047 0.953 22 H 0.049 0.951 23 H 0.041 0.959 24 H 0.080 0.920 25 H 0.042 0.958 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.030 0.970 29 H 0.258 0.742 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.053 -4.221 -7.089 11.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.043 4.043 3 C -0.204 4.204 4 N -0.225 5.225 5 C 0.090 3.910 6 H 0.040 0.960 7 C -0.213 4.213 8 C -0.628 4.628 9 H 0.061 0.939 10 C -0.226 4.226 11 N -0.576 5.576 12 Si 0.934 3.066 13 H -0.204 1.204 14 H -0.200 1.200 15 H -0.210 1.210 16 C -0.093 4.093 17 C -0.242 4.242 18 C -0.208 4.208 19 H 0.093 0.907 20 H 0.084 0.916 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.060 0.940 24 H 0.099 0.901 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.128 0.872 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.213 -4.086 -5.546 9.974 hybrid contribution -0.289 0.055 -1.621 1.647 sum -7.502 -4.032 -7.167 11.131 Atomic orbital electron populations 1.21955 0.93331 1.02396 1.01802 1.21876 0.96720 0.94036 0.91705 1.22038 1.00437 0.96359 1.01616 1.62114 1.26949 1.01730 1.31687 1.19360 0.83890 0.94780 0.93012 0.95963 1.22340 1.00766 0.99982 0.98216 1.22203 1.09569 1.26564 1.04459 0.93912 1.26995 0.94557 0.95775 1.05303 1.70893 1.44025 1.18786 1.23860 0.82996 0.75812 0.75145 0.72601 1.20414 1.19974 1.21017 1.22441 0.96695 0.89031 1.01153 1.23576 1.05325 1.03757 0.91494 1.23139 0.96637 1.01045 0.99981 0.90711 0.91642 0.93397 0.93272 0.94019 0.90120 0.93906 0.94323 0.94167 0.95133 0.93136 0.89577 0.87232 0.88310 0.88285 0.88574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 8.55 71.98 0.62 -3.26 16 2 C 0.06 2.23 1.68 44.91 0.08 2.30 16 3 C -0.15 -5.12 7.75 71.98 0.56 -4.57 16 4 N -0.50 -21.39 4.49 -825.32 -3.71 -25.09 16 5 C 0.20 9.89 1.41 44.17 0.06 9.95 16 6 H 0.02 1.23 4.84 -2.38 -0.01 1.22 16 7 C -0.15 -7.26 7.82 71.98 0.56 -6.69 16 8 C -0.59 -33.33 7.77 25.60 0.20 -33.13 16 9 H 0.04 2.48 7.58 -2.91 -0.02 2.46 16 10 C -0.03 -1.61 5.21 84.65 0.44 -1.17 16 11 N -0.94 -56.89 13.12 21.45 0.28 -56.61 16 12 Si 1.11 51.25 29.92 68.60 2.05 53.30 16 13 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 14 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 15 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 16 C 0.02 0.64 4.47 44.92 0.20 0.84 16 17 C -0.20 -5.99 8.85 30.62 0.27 -5.72 16 18 C -0.17 -5.29 9.78 30.62 0.30 -4.99 16 19 H 0.07 1.70 8.10 -2.39 -0.02 1.68 16 20 H 0.06 1.72 4.75 -2.38 -0.01 1.71 16 21 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.05 1.64 5.78 -2.39 -0.01 1.63 16 23 H 0.04 1.58 5.68 -2.39 -0.01 1.56 16 24 H 0.08 2.21 8.09 -2.39 -0.02 2.19 16 25 H 0.04 1.65 7.55 -2.39 -0.02 1.63 16 26 H 0.04 1.80 6.66 -2.38 -0.02 1.78 16 27 H 0.04 1.67 6.23 -2.39 -0.01 1.66 16 28 H 0.03 1.55 6.60 -2.39 -0.02 1.54 16 29 H 0.26 15.76 6.07 -92.70 -0.56 15.19 16 30 H 0.09 3.82 6.33 -2.39 -0.02 3.80 16 31 H 0.11 3.00 4.71 -2.39 -0.01 2.99 16 32 H 0.10 2.61 8.14 -2.38 -0.02 2.59 16 33 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.10 2.93 6.71 -2.39 -0.02 2.91 16 Total: -1.00 -62.29 252.27 3.19 -59.10 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 1.28 Total: 15.74 kcal Atomic # 6 Polarization: -49.72 SS G_CDS: 3.29 Total: -46.44 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -3.43 Total: -81.70 kcal Atomic # 14 Polarization: 51.25 SS G_CDS: 2.05 Total: 53.30 kcal Total: -62.29 3.19 -59.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137489.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.156 kcal (2) G-P(sol) polarization free energy of solvation -62.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds