Wall clock time and date at job start Mon Mar 30 2020 01:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47238 * 2 1 4 4 C 1.50699 * 109.46869 * 240.00001 * 2 1 3 5 5 H 1.08001 * 120.00114 * 245.52059 * 4 2 1 6 6 C 1.37880 * 120.00359 * 65.52200 * 4 2 1 7 7 N 1.31514 * 119.99385 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00443 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46797 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46934 * 119.99863 * 8 6 4 11 11 H 1.48496 * 109.47349 * 240.00713 * 8 6 4 12 12 C 1.52999 * 109.47430 * 119.99878 * 2 1 3 13 13 H 1.09002 * 109.46312 * 299.80742 * 12 2 1 14 14 C 1.53039 * 109.46130 * 59.78469 * 12 2 1 15 15 C 1.53121 * 109.27987 * 179.18718 * 14 12 2 16 16 C 1.53120 * 109.15760 * 302.34223 * 15 14 12 17 17 C 1.53045 * 109.27710 * 57.65721 * 16 15 14 18 18 N 1.46843 * 109.45588 * 179.82862 * 12 2 1 19 19 C 1.46902 * 110.99809 * 54.15234 * 18 12 2 20 20 H 1.09005 * 109.47033 * 299.99702 * 1 2 3 21 21 H 1.09000 * 109.47150 * 60.00074 * 1 2 3 22 22 H 1.09006 * 109.47360 * 180.02562 * 1 2 3 23 23 H 0.97011 * 119.99505 * 179.97438 * 7 6 4 24 24 H 1.09004 * 109.50071 * 299.12778 * 14 12 2 25 25 H 1.09004 * 109.50370 * 59.24226 * 14 12 2 26 26 H 1.09001 * 109.52392 * 62.25030 * 15 14 12 27 27 H 1.09001 * 109.52003 * 182.44027 * 15 14 12 28 28 H 1.09001 * 109.49896 * 177.59125 * 16 15 14 29 29 H 1.08998 * 109.50711 * 297.71614 * 16 15 14 30 30 H 1.08998 * 109.46309 * 60.83082 * 17 16 15 31 31 H 1.09001 * 109.46184 * 180.81376 * 17 16 15 32 32 H 1.09006 * 109.46793 * 64.44614 * 19 18 12 33 33 H 1.08998 * 109.47312 * 184.44430 * 19 18 12 34 34 H 1.09005 * 109.47171 * 304.44653 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5776 -1.6376 -1.1339 6 6 1.7956 -0.1768 -2.4796 7 7 1.1319 0.9525 -2.5971 8 14 2.4187 -1.0570 -4.0048 9 1 3.1306 -2.2973 -3.6043 10 1 1.2701 -1.4062 -4.8787 11 1 3.3505 -0.1676 -4.7436 12 6 2.0400 -0.7212 1.2492 13 1 1.6795 -0.2053 2.1391 14 6 1.5254 -2.1625 1.2518 15 6 2.0548 -2.8862 2.4930 16 6 3.5851 -2.8332 2.4910 17 6 4.0400 -1.3725 2.4526 18 7 3.5084 -0.7246 1.2467 19 6 4.0377 0.6384 1.1047 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.9657 1.3282 -3.4759 24 1 0.4355 -2.1596 1.2693 25 1 1.8741 -2.6750 0.3552 26 1 1.6745 -2.3971 3.3898 27 1 1.7262 -3.9254 2.4765 28 1 3.9668 -3.3096 3.3941 29 1 3.9662 -3.3562 1.6140 30 1 3.6701 -0.8535 3.3368 31 1 5.1292 -1.3316 2.4365 32 1 3.7568 1.2299 1.9763 33 1 5.1242 0.6000 1.0266 34 1 3.6247 1.0968 0.2061 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261230782.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:46 Heat of formation + Delta-G solvation = -11.092963 kcal Electronic energy + Delta-G solvation = -13559.385054 eV Core-core repulsion = 11491.554632 eV Total energy + Delta-G solvation = -2067.830423 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.65260 -34.10586 -32.82201 -31.26167 -28.12101 -25.86307 -24.98461 -23.00101 -21.88156 -19.72238 -18.70229 -15.86132 -15.14422 -14.48470 -14.36424 -13.79041 -13.53255 -13.25818 -12.59179 -12.30157 -11.93761 -11.59717 -11.25542 -10.94543 -10.89270 -10.66608 -10.49243 -10.33952 -10.22379 -10.04735 -9.88060 -9.41787 -8.87881 -8.57706 -8.16985 -7.37792 -5.84355 -3.83756 3.39133 3.47262 3.52846 4.58031 4.72240 5.34679 5.39866 5.47480 5.55053 5.85252 5.95273 6.06653 6.10841 6.15613 6.24070 6.32679 6.46471 6.48978 6.57420 6.71672 6.81576 6.89582 6.97368 7.14011 7.23444 7.36580 7.82351 7.88208 7.99222 8.13228 8.27426 8.65569 9.20970 9.78300 11.24490 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.037453 B = 0.012351 C = 0.012058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.415592 B = 2266.525941 C = 2321.589656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.043 3.957 3 H 0.031 0.969 4 C -0.476 4.476 5 H 0.064 0.936 6 C 0.052 3.948 7 N -0.901 5.901 8 Si 0.886 3.114 9 H -0.274 1.274 10 H -0.289 1.289 11 H -0.288 1.288 12 C 0.099 3.901 13 H 0.008 0.992 14 C -0.106 4.106 15 C -0.123 4.123 16 C -0.113 4.113 17 C 0.055 3.945 18 N -0.519 5.519 19 C 0.029 3.971 20 H 0.004 0.996 21 H 0.073 0.927 22 H 0.031 0.969 23 H 0.255 0.745 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.018 0.982 31 H 0.062 0.938 32 H 0.006 0.994 33 H 0.051 0.949 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.899 -4.099 8.299 9.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.025 3.975 3 H 0.049 0.951 4 C -0.514 4.514 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.715 3.285 9 H -0.198 1.198 10 H -0.216 1.216 11 H -0.215 1.215 12 C -0.008 4.008 13 H 0.026 0.974 14 C -0.143 4.143 15 C -0.161 4.161 16 C -0.151 4.151 17 C -0.074 4.074 18 N -0.243 5.243 19 C -0.119 4.119 20 H 0.023 0.977 21 H 0.092 0.908 22 H 0.050 0.950 23 H 0.065 0.935 24 H 0.079 0.921 25 H 0.099 0.901 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.036 0.964 31 H 0.081 0.919 32 H 0.024 0.976 33 H 0.070 0.930 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.001 -4.257 7.760 9.345 hybrid contribution 0.069 0.118 -0.167 0.215 sum 3.069 -4.139 7.593 9.176 Atomic orbital electron populations 1.21820 0.99016 0.98980 0.99439 1.18845 0.91849 0.95709 0.91138 0.95081 1.21164 1.32727 1.07864 0.89691 0.91798 1.24976 0.95747 0.95091 0.98844 1.69943 1.41902 1.19347 1.22942 0.86629 0.78376 0.79891 0.83642 1.19831 1.21550 1.21463 1.21723 0.85481 0.95745 0.97886 0.97377 1.21630 0.99419 0.95797 0.97467 1.21655 0.95575 0.99852 0.98981 1.21538 0.96199 0.96286 1.01071 1.22060 0.98916 0.94921 0.91492 1.61782 1.08708 1.18204 1.35606 1.22354 0.99064 0.89244 1.01208 0.97683 0.90790 0.95032 0.93524 0.92143 0.90133 0.93332 0.92786 0.92823 0.91260 0.96393 0.91908 0.97567 0.93019 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 8.66 37.15 0.32 -2.90 16 2 C 0.04 1.06 1.52 -91.78 -0.14 0.92 16 3 H 0.03 0.84 6.24 -51.93 -0.32 0.52 16 4 C -0.48 -12.80 7.36 -34.44 -0.25 -13.05 16 5 H 0.06 1.76 6.52 -52.49 -0.34 1.41 16 6 C 0.05 1.46 5.32 -17.82 -0.09 1.36 16 7 N -0.90 -26.01 11.74 55.43 0.65 -25.35 16 8 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 9 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 C 0.10 2.11 1.64 -67.72 -0.11 1.99 16 13 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 14 C -0.11 -2.04 4.75 -26.65 -0.13 -2.17 16 15 C -0.12 -1.95 6.00 -26.61 -0.16 -2.11 16 16 C -0.11 -1.73 6.09 -26.65 -0.16 -1.89 16 17 C 0.05 0.91 5.46 -3.83 -0.02 0.89 16 18 N -0.52 -10.46 4.31 -234.92 -1.01 -11.47 16 19 C 0.03 0.57 9.18 60.07 0.55 1.12 16 20 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 21 H 0.07 1.96 6.52 -51.93 -0.34 1.62 16 22 H 0.03 0.71 6.44 -51.93 -0.33 0.38 16 23 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 24 H 0.06 1.15 6.47 -51.93 -0.34 0.82 16 25 H 0.08 1.72 6.51 -51.93 -0.34 1.38 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 32 H 0.01 0.11 8.14 -51.93 -0.42 -0.32 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 2.02 5.88 -51.93 -0.31 1.72 16 LS Contribution 257.20 15.07 3.88 3.88 Total: -1.00 -28.13 257.20 -7.38 -35.51 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -5.68 Total: -3.47 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -0.19 Total: -15.84 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: -0.36 Total: -36.83 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.13 -7.38 -35.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261230782.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.415 kcal (2) G-P(sol) polarization free energy of solvation -28.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds