Wall clock time and date at job start Mon Mar 30 2020 01:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47238 * 2 1 4 4 C 1.50699 * 109.46869 * 240.00001 * 2 1 3 5 5 H 1.08001 * 120.00114 * 245.52059 * 4 2 1 6 6 C 1.37880 * 120.00359 * 65.52200 * 4 2 1 7 7 N 1.31514 * 119.99385 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00443 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46797 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46934 * 119.99863 * 8 6 4 11 11 H 1.48496 * 109.47349 * 240.00713 * 8 6 4 12 12 C 1.52999 * 109.47430 * 119.99878 * 2 1 3 13 13 H 1.09002 * 109.46312 * 299.80742 * 12 2 1 14 14 C 1.53039 * 109.46130 * 59.78469 * 12 2 1 15 15 C 1.53121 * 109.27987 * 179.18718 * 14 12 2 16 16 C 1.53120 * 109.15760 * 302.34223 * 15 14 12 17 17 C 1.53045 * 109.27710 * 57.65721 * 16 15 14 18 18 N 1.46843 * 109.45588 * 179.82862 * 12 2 1 19 19 C 1.46902 * 110.99809 * 54.15234 * 18 12 2 20 20 H 1.09005 * 109.47033 * 299.99702 * 1 2 3 21 21 H 1.09000 * 109.47150 * 60.00074 * 1 2 3 22 22 H 1.09006 * 109.47360 * 180.02562 * 1 2 3 23 23 H 0.97011 * 119.99505 * 179.97438 * 7 6 4 24 24 H 1.09004 * 109.50071 * 299.12778 * 14 12 2 25 25 H 1.09004 * 109.50370 * 59.24226 * 14 12 2 26 26 H 1.09001 * 109.52392 * 62.25030 * 15 14 12 27 27 H 1.09001 * 109.52003 * 182.44027 * 15 14 12 28 28 H 1.09001 * 109.49896 * 177.59125 * 16 15 14 29 29 H 1.08998 * 109.50711 * 297.71614 * 16 15 14 30 30 H 1.08998 * 109.46309 * 60.83082 * 17 16 15 31 31 H 1.09001 * 109.46184 * 180.81376 * 17 16 15 32 32 H 1.09006 * 109.46793 * 64.44614 * 19 18 12 33 33 H 1.08998 * 109.47312 * 184.44430 * 19 18 12 34 34 H 1.09005 * 109.47171 * 304.44653 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5776 -1.6376 -1.1339 6 6 1.7956 -0.1768 -2.4796 7 7 1.1319 0.9525 -2.5971 8 14 2.4187 -1.0570 -4.0048 9 1 3.1306 -2.2973 -3.6043 10 1 1.2701 -1.4062 -4.8787 11 1 3.3505 -0.1676 -4.7436 12 6 2.0400 -0.7212 1.2492 13 1 1.6795 -0.2053 2.1391 14 6 1.5254 -2.1625 1.2518 15 6 2.0548 -2.8862 2.4930 16 6 3.5851 -2.8332 2.4910 17 6 4.0400 -1.3725 2.4526 18 7 3.5084 -0.7246 1.2467 19 6 4.0377 0.6384 1.1047 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.9657 1.3282 -3.4759 24 1 0.4355 -2.1596 1.2693 25 1 1.8741 -2.6750 0.3552 26 1 1.6745 -2.3971 3.3898 27 1 1.7262 -3.9254 2.4765 28 1 3.9668 -3.3096 3.3941 29 1 3.9662 -3.3562 1.6140 30 1 3.6701 -0.8535 3.3368 31 1 5.1292 -1.3316 2.4365 32 1 3.7568 1.2299 1.9763 33 1 5.1242 0.6000 1.0266 34 1 3.6247 1.0968 0.2061 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261230782.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:46 Heat of formation + Delta-G solvation = -27.912267 kcal Electronic energy + Delta-G solvation = -13560.114394 eV Core-core repulsion = 11491.554632 eV Total energy + Delta-G solvation = -2068.559762 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.19531 -35.94301 -34.26501 -33.19680 -29.75281 -27.37198 -27.08257 -24.64932 -23.36719 -21.25030 -20.43133 -17.86031 -16.82422 -16.20910 -16.00591 -15.30400 -15.01367 -14.91275 -14.32679 -13.88981 -13.44143 -13.26618 -13.07050 -12.82771 -12.50422 -12.42747 -12.24844 -12.04510 -11.96393 -11.68072 -11.44275 -10.98259 -10.70775 -10.57400 -10.23771 -8.91809 -7.97615 -6.01870 1.42278 1.45370 1.56334 2.52429 3.21581 3.37782 4.05218 4.12315 4.17858 4.39153 4.54033 4.60833 4.69250 4.72542 4.81208 4.91595 4.97786 5.00911 5.13083 5.17482 5.23050 5.28032 5.31856 5.39886 5.49644 5.69121 5.77716 5.97505 6.06680 6.42779 6.53963 6.66504 7.08106 7.62560 9.10550 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.037453 B = 0.012351 C = 0.012058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.415592 B = 2266.525941 C = 2321.589656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.041 3.959 3 H 0.001 0.999 4 C -0.472 4.472 5 H 0.056 0.944 6 C 0.003 3.997 7 N -0.930 5.930 8 Si 0.943 3.057 9 H -0.269 1.269 10 H -0.287 1.287 11 H -0.288 1.288 12 C 0.106 3.894 13 H 0.009 0.991 14 C -0.103 4.103 15 C -0.117 4.117 16 C -0.110 4.110 17 C 0.052 3.948 18 N -0.540 5.540 19 C 0.035 3.965 20 H 0.023 0.977 21 H 0.043 0.957 22 H 0.039 0.961 23 H 0.254 0.746 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.026 0.974 31 H 0.079 0.921 32 H 0.017 0.983 33 H 0.072 0.928 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.672 -5.550 9.657 11.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.022 3.978 3 H 0.019 0.981 4 C -0.511 4.511 5 H 0.074 0.926 6 C -0.193 4.193 7 N -0.572 5.572 8 Si 0.771 3.229 9 H -0.193 1.193 10 H -0.213 1.213 11 H -0.215 1.215 12 C -0.002 4.002 13 H 0.027 0.973 14 C -0.140 4.140 15 C -0.155 4.155 16 C -0.148 4.148 17 C -0.075 4.075 18 N -0.265 5.265 19 C -0.113 4.113 20 H 0.042 0.958 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.097 0.903 32 H 0.035 0.965 33 H 0.090 0.910 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.782 -5.720 9.128 11.417 hybrid contribution -0.157 0.594 -0.553 0.826 sum 3.625 -5.126 8.576 10.628 Atomic orbital electron populations 1.21673 0.98647 0.99237 0.98836 1.18796 0.92181 0.94318 0.92474 0.98133 1.21324 1.31835 1.07313 0.90630 0.92574 1.25652 0.96301 0.95826 1.01546 1.70069 1.43212 1.20629 1.23286 0.85722 0.77787 0.78902 0.80511 1.19325 1.21314 1.21467 1.21530 0.86548 0.96431 0.95731 0.97272 1.21555 0.99343 0.94682 0.98457 1.21617 0.96025 1.00589 0.97246 1.21555 0.95662 0.95345 1.02246 1.22187 0.99813 0.95474 0.90054 1.61754 1.07953 1.18589 1.38165 1.22234 1.00003 0.89206 0.99856 0.95811 0.93790 0.94223 0.93736 0.92295 0.92606 0.92164 0.90773 0.89418 0.92373 0.95567 0.90304 0.96458 0.90972 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.07 8.66 71.98 0.62 -5.45 16 2 C 0.04 2.05 1.52 -11.54 -0.02 2.03 16 3 H 0.00 0.04 6.24 -2.39 -0.01 0.02 16 4 C -0.47 -25.74 7.36 25.60 0.19 -25.55 16 5 H 0.06 3.11 6.52 -2.91 -0.02 3.09 16 6 C 0.00 0.16 5.32 84.66 0.45 0.61 16 7 N -0.93 -54.97 11.74 21.45 0.25 -54.72 16 8 Si 0.94 45.14 29.54 68.60 2.03 47.17 16 9 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 11 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 12 C 0.11 4.39 1.64 44.94 0.07 4.47 16 13 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 14 C -0.10 -3.83 4.75 30.65 0.15 -3.68 16 15 C -0.12 -3.34 6.00 30.67 0.18 -3.16 16 16 C -0.11 -2.98 6.09 30.65 0.19 -2.79 16 17 C 0.05 1.59 5.46 86.33 0.47 2.06 16 18 N -0.54 -21.10 4.31 -897.14 -3.87 -24.96 16 19 C 0.04 1.34 9.18 127.69 1.17 2.52 16 20 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 21 H 0.04 2.37 6.52 -2.39 -0.02 2.36 16 22 H 0.04 1.80 6.44 -2.38 -0.02 1.78 16 23 H 0.25 14.42 8.31 -92.70 -0.77 13.65 16 24 H 0.06 2.17 6.47 -2.38 -0.02 2.15 16 25 H 0.06 2.35 6.51 -2.39 -0.02 2.33 16 26 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 2.14 8.12 -2.39 -0.02 2.12 16 32 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.05 2.42 5.88 -2.38 -0.01 2.41 16 Total: -1.00 -60.24 257.20 2.94 -57.30 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: 1.05 Total: 4.16 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: 3.48 Total: -28.95 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -3.62 Total: -79.69 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -60.24 2.94 -57.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261230782.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.393 kcal (2) G-P(sol) polarization free energy of solvation -60.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds