Wall clock time and date at job start Mon Mar 30 2020 01:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47216 * 2 1 4 4 C 1.50697 * 109.47004 * 120.00400 * 2 1 3 5 5 H 1.08002 * 119.99950 * 114.88099 * 4 2 1 6 6 C 1.37875 * 120.00286 * 294.87098 * 4 2 1 7 7 N 1.31518 * 119.99973 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00351 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47124 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46906 * 120.00341 * 8 6 4 11 11 H 1.48501 * 109.47637 * 240.00499 * 8 6 4 12 12 C 1.52998 * 109.46874 * 240.00243 * 2 1 3 13 13 H 1.09007 * 109.45957 * 58.73346 * 12 2 1 14 14 C 1.53173 * 109.44849 * 298.79770 * 12 2 1 15 15 C 1.53110 * 109.21297 * 180.83481 * 14 12 2 16 16 C 1.53118 * 109.21273 * 57.62149 * 15 14 12 17 17 C 1.53042 * 109.27831 * 302.31462 * 16 15 14 18 18 N 1.46845 * 109.46219 * 178.71196 * 12 2 1 19 19 C 1.46895 * 111.00099 * 305.85375 * 18 12 2 20 20 H 1.09000 * 109.47502 * 59.99328 * 1 2 3 21 21 H 1.08997 * 109.47216 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46566 * 299.99420 * 1 2 3 23 23 H 0.96991 * 120.00197 * 179.97438 * 7 6 4 24 24 H 1.08998 * 109.58796 * 60.87773 * 14 12 2 25 25 H 1.08998 * 109.48775 * 300.72437 * 14 12 2 26 26 H 1.09009 * 109.52158 * 297.68782 * 15 14 12 27 27 H 1.08998 * 109.52948 * 177.56370 * 15 14 12 28 28 H 1.08993 * 109.50442 * 62.25845 * 16 15 14 29 29 H 1.09004 * 109.50443 * 182.33659 * 16 15 14 30 30 H 1.09004 * 109.46060 * 179.19538 * 17 16 15 31 31 H 1.08997 * 109.46337 * 299.17373 * 17 16 15 32 32 H 1.09005 * 109.47365 * 303.46929 * 19 18 12 33 33 H 1.09001 * 109.46982 * 63.46431 * 19 18 12 34 34 H 1.09001 * 109.47401 * 183.46470 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5833 -1.6343 1.1334 6 6 1.7887 -0.1811 2.4799 7 7 1.1174 0.9437 2.5981 8 14 2.4119 -1.0614 4.0050 9 1 3.1330 -2.2961 3.6040 10 1 3.3361 -0.1684 4.7490 11 1 1.2625 -1.4194 4.8745 12 6 2.0400 -0.7212 -1.2493 13 1 1.6581 -0.2204 -2.1390 14 6 1.5540 -2.1737 -1.2337 15 6 2.0845 -2.8958 -2.4753 16 6 3.6132 -2.8113 -2.4926 17 6 4.0383 -1.3413 -2.4717 18 7 3.5081 -0.6942 -1.2648 19 6 4.0107 0.6805 -1.1405 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 0.9457 1.3159 3.4771 24 1 0.4642 -2.1945 -1.2384 25 1 1.9240 -2.6714 -0.3374 26 1 1.6833 -2.4222 -3.3714 27 1 1.7777 -3.9414 -2.4475 28 1 4.0157 -3.3190 -1.6161 29 1 3.9938 -3.2880 -3.3960 30 1 5.1265 -1.2779 -2.4696 31 1 3.6469 -0.8375 -3.3555 32 1 3.5920 1.2940 -1.9384 33 1 3.7149 1.0895 -0.1745 34 1 5.0981 0.6781 -1.2165 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261230783.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:49 Heat of formation + Delta-G solvation = -28.746885 kcal Electronic energy + Delta-G solvation = -13556.593353 eV Core-core repulsion = 11487.997399 eV Total energy + Delta-G solvation = -2068.595954 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.18576 -35.94340 -34.26862 -33.18997 -29.76000 -27.36936 -27.08839 -24.63830 -23.37419 -21.24972 -20.44362 -17.85947 -16.82045 -16.20596 -16.00285 -15.30918 -15.00839 -14.89640 -14.32764 -13.89459 -13.45453 -13.26016 -13.07697 -12.83173 -12.50632 -12.40883 -12.24980 -12.06911 -11.97725 -11.68460 -11.43907 -10.98744 -10.70907 -10.57402 -10.24570 -8.92153 -7.97656 -6.02195 1.42176 1.45254 1.56227 2.52250 3.21292 3.37354 4.05074 4.12137 4.17762 4.39644 4.53917 4.60961 4.69258 4.71862 4.79702 4.91680 4.97602 5.00912 5.13503 5.17502 5.23843 5.27303 5.31582 5.39752 5.49058 5.68965 5.77514 5.97649 6.06685 6.42765 6.53712 6.66062 7.07756 7.62294 9.10434 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.037412 B = 0.012320 C = 0.012058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.246975 B = 2272.268845 C = 2321.484062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.041 3.959 3 H 0.000 1.000 4 C -0.473 4.473 5 H 0.056 0.944 6 C 0.003 3.997 7 N -0.930 5.930 8 Si 0.943 3.057 9 H -0.269 1.269 10 H -0.288 1.288 11 H -0.286 1.286 12 C 0.106 3.894 13 H 0.010 0.990 14 C -0.102 4.102 15 C -0.117 4.117 16 C -0.110 4.110 17 C 0.052 3.948 18 N -0.541 5.541 19 C 0.038 3.962 20 H 0.023 0.977 21 H 0.038 0.962 22 H 0.044 0.956 23 H 0.254 0.746 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.026 0.974 32 H 0.015 0.985 33 H 0.050 0.950 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.771 -5.523 -9.697 11.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.023 3.977 3 H 0.018 0.982 4 C -0.512 4.512 5 H 0.074 0.926 6 C -0.193 4.193 7 N -0.572 5.572 8 Si 0.771 3.229 9 H -0.193 1.193 10 H -0.215 1.215 11 H -0.213 1.213 12 C -0.002 4.002 13 H 0.027 0.973 14 C -0.140 4.140 15 C -0.155 4.155 16 C -0.148 4.148 17 C -0.075 4.075 18 N -0.265 5.265 19 C -0.110 4.110 20 H 0.042 0.958 21 H 0.057 0.943 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.044 0.956 32 H 0.034 0.966 33 H 0.068 0.932 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.890 -5.686 -9.167 11.468 hybrid contribution -0.197 0.586 0.556 0.831 sum 3.693 -5.101 -8.612 10.668 Atomic orbital electron populations 1.21672 0.98664 0.99218 0.98863 1.18779 0.92161 0.94315 0.92468 0.98221 1.21335 1.31620 1.07590 0.90638 0.92556 1.25655 0.96283 0.95831 1.01559 1.70061 1.42900 1.20965 1.23269 0.85720 0.77800 0.78896 0.80494 1.19303 1.21473 1.21287 1.21565 0.86443 0.96458 0.95737 0.97258 1.21572 0.99411 0.94573 0.98469 1.21615 0.96048 1.00578 0.97253 1.21554 0.95717 0.95270 1.02271 1.22191 0.99845 0.95440 0.90053 1.61749 1.08771 1.17778 1.38239 1.22197 0.99821 0.88881 1.00129 0.95838 0.94276 0.93718 0.93726 0.92343 0.92573 0.92181 0.90797 0.92378 0.89400 0.90228 0.95565 0.96646 0.93151 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.11 8.70 71.98 0.63 -5.48 16 2 C 0.04 2.08 1.54 -11.54 -0.02 2.06 16 3 H 0.00 -0.01 6.33 -2.39 -0.02 -0.03 16 4 C -0.47 -25.82 7.42 25.60 0.19 -25.63 16 5 H 0.06 3.12 6.44 -2.91 -0.02 3.10 16 6 C 0.00 0.15 5.32 84.65 0.45 0.61 16 7 N -0.93 -55.04 11.71 21.45 0.25 -54.79 16 8 Si 0.94 45.16 29.54 68.60 2.03 47.18 16 9 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 12 C 0.11 4.42 1.63 44.98 0.07 4.49 16 13 H 0.01 0.39 8.14 -2.38 -0.02 0.38 16 14 C -0.10 -3.83 4.77 30.69 0.15 -3.69 16 15 C -0.12 -3.35 6.00 30.67 0.18 -3.17 16 16 C -0.11 -2.98 6.09 30.65 0.19 -2.79 16 17 C 0.05 1.58 5.46 86.33 0.47 2.05 16 18 N -0.54 -21.10 4.36 -896.88 -3.91 -25.01 16 19 C 0.04 1.44 8.95 127.69 1.14 2.58 16 20 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 21 H 0.04 1.78 6.48 -2.39 -0.02 1.76 16 22 H 0.04 2.42 6.49 -2.38 -0.02 2.40 16 23 H 0.25 14.44 8.31 -92.72 -0.77 13.67 16 24 H 0.06 2.16 6.51 -2.39 -0.02 2.14 16 25 H 0.06 2.37 6.43 -2.39 -0.02 2.35 16 26 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.07 1.83 8.14 -2.39 -0.02 1.82 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.08 2.14 8.04 -2.38 -0.02 2.12 16 31 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.02 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.05 2.28 6.34 -2.39 -0.02 2.27 16 34 H 0.07 2.41 8.03 -2.39 -0.02 2.39 16 Total: -1.00 -60.43 257.34 2.87 -57.56 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: 1.05 Total: 4.02 kcal Atomic # 6 Polarization: -32.42 SS G_CDS: 3.45 Total: -28.97 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -3.66 Total: -79.80 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -60.43 2.87 -57.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261230783.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.817 kcal (2) G-P(sol) polarization free energy of solvation -60.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds