Wall clock time and date at job start Mon Mar 30 2020 01:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 109.47039 * 2 1 4 4 C 1.50698 * 109.47501 * 119.99905 * 2 1 3 5 5 H 1.08001 * 120.00216 * 114.52807 * 4 2 1 6 6 C 1.37884 * 120.00113 * 294.53697 * 4 2 1 7 7 N 1.31519 * 119.99492 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00139 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47083 * 90.00088 * 8 6 4 10 10 H 1.48504 * 109.47175 * 209.99596 * 8 6 4 11 11 H 1.48500 * 109.47341 * 330.00038 * 8 6 4 12 12 C 1.53004 * 109.47366 * 240.00075 * 2 1 3 13 13 H 1.08998 * 109.45257 * 179.84461 * 12 2 1 14 14 C 1.53033 * 109.45996 * 299.82317 * 12 2 1 15 15 C 1.53115 * 109.30983 * 179.21310 * 14 12 2 16 16 C 1.53122 * 109.16176 * 302.32821 * 15 14 12 17 17 C 1.53037 * 109.28012 * 57.65199 * 16 15 14 18 18 N 1.46849 * 109.51820 * 300.82214 * 17 16 15 19 19 C 1.46906 * 110.99609 * 185.83883 * 18 17 16 20 20 H 1.08999 * 109.46536 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46992 * 299.99796 * 1 2 3 22 22 H 1.08997 * 109.47249 * 59.99933 * 1 2 3 23 23 H 0.97001 * 119.99387 * 179.97438 * 7 6 4 24 24 H 1.09006 * 109.50382 * 59.25358 * 14 12 2 25 25 H 1.08996 * 109.50275 * 299.17606 * 14 12 2 26 26 H 1.09000 * 109.52435 * 62.22998 * 15 14 12 27 27 H 1.09002 * 109.52783 * 182.42169 * 15 14 12 28 28 H 1.09000 * 109.50352 * 177.59925 * 16 15 14 29 29 H 1.09001 * 109.49805 * 297.70925 * 16 15 14 30 30 H 1.08991 * 109.46059 * 60.83829 * 17 16 15 31 31 H 1.08997 * 109.46276 * 180.80993 * 17 16 15 32 32 H 1.09002 * 109.46837 * 55.94700 * 19 18 17 33 33 H 1.08992 * 109.47276 * 175.95005 * 19 18 17 34 34 H 1.09000 * 109.47092 * 295.95325 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5785 -1.6371 1.1338 6 6 1.7948 -0.1773 2.4796 7 7 1.1300 0.9515 2.5972 8 14 2.4169 -1.0581 4.0048 9 1 3.7829 -0.5762 4.3322 10 1 1.5068 -0.7777 5.1443 11 1 2.4557 -2.5207 3.7506 12 6 2.0401 -0.7212 -1.2493 13 1 3.1301 -0.7186 -1.2503 14 6 1.5335 -2.1653 -1.2468 15 6 2.0295 -2.8780 -2.5079 16 6 1.5440 -2.1123 -3.7419 17 6 2.0502 -0.6697 -3.6730 18 7 1.5479 -0.0314 -2.4495 19 6 1.8988 1.3948 -2.4178 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 0.9625 1.3263 3.4761 24 1 0.4435 -2.1686 -1.2318 25 1 1.9111 -2.6819 -0.3645 26 1 3.1191 -2.9092 -2.5041 27 1 1.6352 -3.8939 -2.5312 28 1 1.9296 -2.5908 -4.6421 29 1 0.4542 -2.1148 -3.7661 30 1 3.1401 -0.6675 -3.6627 31 1 1.6942 -0.1180 -4.5429 32 1 1.5201 1.8822 -3.3162 33 1 1.4540 1.8589 -1.5377 34 1 2.9828 1.5014 -2.3761 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261230784.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:52 Heat of formation + Delta-G solvation = -30.406827 kcal Electronic energy + Delta-G solvation = -13476.245348 eV Core-core repulsion = 11407.577413 eV Total energy + Delta-G solvation = -2068.667935 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.26061 -35.98439 -34.34992 -33.18655 -29.69133 -27.56692 -27.08322 -24.64755 -23.53115 -21.48275 -19.94104 -18.20686 -16.84666 -16.19699 -15.93812 -15.43143 -15.17862 -15.04400 -14.10725 -13.86290 -13.52365 -13.40132 -13.00530 -12.82100 -12.55927 -12.47666 -12.42747 -12.19047 -11.81942 -11.59436 -11.29980 -11.19926 -10.71307 -10.65485 -10.28370 -9.07141 -8.07319 -6.17743 1.40680 1.41659 1.51569 2.44206 3.18574 3.23949 4.03987 4.10655 4.14569 4.34939 4.51583 4.60004 4.69455 4.71912 4.80835 4.93050 5.00734 5.06267 5.10315 5.16548 5.19509 5.32866 5.38496 5.42224 5.50516 5.65061 5.66830 5.98467 6.03776 6.31243 6.45400 6.50350 6.94937 7.49276 9.00015 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.046731 B = 0.011251 C = 0.009911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.024213 B = 2488.040373 C = 2824.430340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.049 3.951 3 H -0.002 1.002 4 C -0.524 4.524 5 H 0.054 0.946 6 C 0.010 3.990 7 N -0.920 5.920 8 Si 0.950 3.050 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.105 3.895 13 H 0.005 0.995 14 C -0.100 4.100 15 C -0.119 4.119 16 C -0.109 4.109 17 C 0.052 3.948 18 N -0.545 5.545 19 C 0.029 3.971 20 H 0.027 0.973 21 H 0.032 0.968 22 H 0.032 0.968 23 H 0.258 0.742 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.022 0.978 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.317 -4.558 -10.813 11.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.030 3.970 3 H 0.016 0.984 4 C -0.563 4.563 5 H 0.073 0.927 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.776 3.224 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.191 1.191 12 C -0.003 4.003 13 H 0.023 0.977 14 C -0.138 4.138 15 C -0.157 4.157 16 C -0.146 4.146 17 C -0.076 4.076 18 N -0.269 5.269 19 C -0.119 4.119 20 H 0.046 0.954 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 0.745 -4.478 -10.694 11.618 hybrid contribution 1.198 0.083 1.312 1.778 sum 1.944 -4.395 -9.383 10.542 Atomic orbital electron populations 1.21431 0.98082 0.98457 0.98362 1.18667 0.93284 0.94042 0.90991 0.98371 1.21541 1.34661 1.08080 0.91969 0.92750 1.25720 0.95557 0.95672 1.01825 1.70076 1.41704 1.20353 1.23874 0.85680 0.78023 0.79303 0.79407 1.20401 1.21077 1.19102 1.21534 0.94126 0.94758 0.89878 0.97714 1.21510 1.00713 0.93970 0.97583 1.21633 1.00126 0.99308 0.94615 1.21556 1.01364 0.93803 0.97901 1.22194 0.96698 0.96261 0.92418 1.61981 1.60114 1.02486 1.02362 1.22318 0.97776 0.89330 1.02467 0.95353 0.94930 0.94913 0.93254 0.92291 0.92936 0.92833 0.90669 0.89366 0.91577 0.95943 0.89497 0.89785 0.92889 0.96800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.30 8.43 71.98 0.61 -4.69 16 2 C 0.05 2.51 1.50 -11.54 -0.02 2.49 16 3 H 0.00 -0.10 6.34 -2.38 -0.02 -0.12 16 4 C -0.52 -29.17 7.88 25.60 0.20 -28.97 16 5 H 0.05 2.97 6.50 -2.91 -0.02 2.95 16 6 C 0.01 0.59 5.32 84.66 0.45 1.04 16 7 N -0.92 -54.60 11.73 21.45 0.25 -54.35 16 8 Si 0.95 44.38 29.54 68.60 2.03 46.40 16 9 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 10 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 12 C 0.10 4.49 1.64 44.92 0.07 4.56 16 13 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 14 C -0.10 -3.84 4.77 30.64 0.15 -3.70 16 15 C -0.12 -3.48 6.00 30.67 0.18 -3.30 16 16 C -0.11 -2.78 6.09 30.65 0.19 -2.59 16 17 C 0.05 1.49 5.47 86.33 0.47 1.96 16 18 N -0.54 -19.97 3.99 -896.98 -3.58 -23.54 16 19 C 0.03 1.03 8.94 127.69 1.14 2.18 16 20 H 0.03 1.36 6.42 -2.39 -0.02 1.34 16 21 H 0.03 1.80 6.52 -2.39 -0.02 1.78 16 22 H 0.03 1.51 7.33 -2.39 -0.02 1.49 16 23 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 24 H 0.06 2.35 6.40 -2.38 -0.02 2.33 16 25 H 0.05 2.18 6.54 -2.39 -0.02 2.17 16 26 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.09 2.11 8.09 -2.39 -0.02 2.09 16 32 H 0.08 2.40 8.10 -2.39 -0.02 2.38 16 33 H 0.05 2.16 5.97 -2.39 -0.01 2.14 16 34 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -60.89 256.12 3.20 -57.70 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: 1.05 Total: 4.82 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: 3.45 Total: -31.02 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -3.32 Total: -77.89 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -60.89 3.20 -57.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261230784.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.289 kcal (2) G-P(sol) polarization free energy of solvation -60.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds