Wall clock time and date at job start Mon Mar 30 2020 01:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47314 * 2 1 4 4 C 1.50699 * 109.47206 * 119.99812 * 2 1 3 5 5 H 1.08006 * 120.00274 * 119.99673 * 4 2 1 6 6 C 1.37873 * 120.00339 * 299.99883 * 4 2 1 7 7 N 1.31516 * 119.99599 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00331 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47021 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.46960 * 120.00210 * 8 6 4 11 11 H 1.48503 * 109.47029 * 239.99851 * 8 6 4 12 12 C 1.52999 * 109.47160 * 239.99770 * 2 1 3 13 13 C 1.53000 * 109.47109 * 64.99783 * 12 2 1 14 14 C 1.53120 * 109.52168 * 65.13059 * 13 12 2 15 15 C 1.53166 * 109.20873 * 177.56393 * 14 13 12 16 16 N 1.46845 * 109.55463 * 300.85535 * 15 14 13 17 17 C 1.46848 * 111.19518 * 61.74755 * 16 15 14 18 18 C 1.53037 * 109.52381 * 298.25146 * 17 16 15 19 19 H 1.09003 * 109.47269 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.47027 * 300.00221 * 1 2 3 21 21 H 1.09002 * 109.47384 * 59.99875 * 1 2 3 22 22 H 0.97000 * 119.99987 * 180.02562 * 7 6 4 23 23 H 1.09007 * 109.47195 * 305.00445 * 12 2 1 24 24 H 1.08998 * 109.47318 * 185.00372 * 12 2 1 25 25 H 1.09002 * 109.52286 * 305.00287 * 13 12 2 26 26 H 1.09004 * 109.49930 * 297.56596 * 14 13 12 27 27 H 1.08997 * 109.50353 * 57.67812 * 14 13 12 28 28 H 1.09003 * 109.44926 * 180.83262 * 15 14 13 29 29 H 1.09002 * 109.44150 * 60.87652 * 15 14 13 30 30 H 1.00906 * 111.00175 * 185.84140 * 16 15 14 31 31 H 1.09006 * 109.46097 * 178.23945 * 17 16 15 32 32 H 1.08996 * 109.46046 * 58.26729 * 17 16 15 33 33 H 1.08996 * 109.50616 * 299.24564 * 18 17 16 34 34 H 1.08993 * 109.53667 * 179.13827 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1203 4.0080 9 1 3.1465 -2.2870 3.6038 10 1 3.1466 -0.1873 4.8165 11 1 1.1661 -1.5865 4.8162 12 6 2.0399 -0.7213 -1.2492 13 6 1.6351 0.0688 -2.4953 14 6 2.3472 1.4244 -2.4954 15 6 1.9847 2.1840 -3.7750 16 7 2.3907 1.3963 -4.9459 17 6 1.6843 0.1097 -4.9912 18 6 2.0379 -0.7119 -3.7495 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 0.7096 1.1619 3.4843 23 1 1.6052 -1.7199 -1.2951 24 1 3.1262 -0.7996 -1.2055 25 1 0.5562 0.2240 -2.4936 26 1 2.0315 2.0012 -1.6260 27 1 3.4254 1.2691 -2.4577 28 1 2.5013 3.1437 -3.7861 29 1 0.9079 2.3508 -3.8052 30 1 2.2491 1.9168 -5.7987 31 1 1.9828 -0.4372 -5.8856 32 1 0.6090 0.2865 -5.0157 33 1 3.1112 -0.9008 -3.7315 34 1 1.5018 -1.6606 -3.7753 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261233030.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:58 Heat of formation + Delta-G solvation = -30.298022 kcal Electronic energy + Delta-G solvation = -13018.090547 eV Core-core repulsion = 10949.427330 eV Total energy + Delta-G solvation = -2068.663216 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.53108 -35.09593 -32.47849 -30.53954 -29.92209 -25.72024 -25.07208 -22.70862 -21.94448 -19.59539 -18.56817 -16.51312 -15.98154 -14.59275 -14.36289 -13.97503 -13.82209 -13.25117 -12.80251 -12.35150 -12.21049 -11.74464 -11.36302 -11.11867 -10.89712 -10.83215 -10.64832 -10.20546 -10.09202 -9.95011 -9.78279 -9.38325 -8.92265 -8.62009 -8.30664 -8.22638 -5.91021 -3.96626 3.33113 3.40987 3.45301 4.38597 4.49452 5.19891 5.23070 5.33905 5.39436 5.53844 5.69559 5.78172 5.90696 6.04871 6.17129 6.27215 6.40312 6.60513 6.64583 6.71432 6.82354 6.92262 7.11279 7.14965 7.20445 7.35007 7.50315 7.54985 7.82009 8.11044 8.26101 8.56590 9.08284 9.67781 11.14793 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.067107 B = 0.007978 C = 0.007747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.145815 B = 3508.864235 C = 3613.250152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.041 3.959 3 H 0.028 0.972 4 C -0.510 4.510 5 H 0.053 0.947 6 C 0.059 3.941 7 N -0.892 5.892 8 Si 0.887 3.113 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.285 1.285 12 C -0.100 4.100 13 C -0.089 4.089 14 C -0.110 4.110 15 C 0.057 3.943 16 N -0.691 5.691 17 C 0.059 3.941 18 C -0.113 4.113 19 H 0.021 0.979 20 H 0.078 0.922 21 H 0.007 0.993 22 H 0.257 0.743 23 H 0.044 0.956 24 H 0.046 0.954 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.026 0.974 30 H 0.334 0.666 31 H 0.066 0.934 32 H 0.025 0.975 33 H 0.066 0.934 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.491 0.638 -11.862 11.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.023 3.977 3 H 0.046 0.954 4 C -0.548 4.548 5 H 0.071 0.929 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.716 3.284 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.211 1.211 12 C -0.137 4.137 13 C -0.108 4.108 14 C -0.148 4.148 15 C -0.072 4.072 16 N -0.322 5.322 17 C -0.070 4.070 18 C -0.151 4.151 19 H 0.040 0.960 20 H 0.097 0.903 21 H 0.026 0.974 22 H 0.067 0.933 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.044 0.956 30 H 0.151 0.849 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.084 0.916 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.968 0.479 -11.405 11.456 hybrid contribution -0.655 -0.170 0.640 0.932 sum 0.312 0.310 -10.765 10.774 Atomic orbital electron populations 1.21830 0.99239 0.98590 0.99701 1.18693 0.92292 0.95908 0.90839 0.95384 1.21311 1.30511 1.12099 0.90875 0.92871 1.24970 0.95242 0.95050 0.98895 1.69905 1.37213 1.23119 1.22938 0.86610 0.78615 0.79772 0.83437 1.19862 1.21119 1.21150 1.21676 0.99588 0.98075 0.94397 1.21284 0.99676 0.95046 0.94783 1.21683 1.00940 0.96345 0.95848 1.22008 0.97564 0.96263 0.91341 1.60301 1.61024 1.05595 1.05258 1.21926 0.95294 0.90954 0.98849 1.21677 1.01747 0.97698 0.93970 0.95983 0.90331 0.97427 0.93273 0.93738 0.93553 0.91792 0.90630 0.91673 0.91345 0.95588 0.84909 0.91545 0.95653 0.91571 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.73 37.15 0.32 -3.03 16 2 C 0.04 1.03 2.17 -91.78 -0.20 0.83 16 3 H 0.03 0.76 6.41 -51.93 -0.33 0.43 16 4 C -0.51 -14.34 8.56 -34.44 -0.29 -14.63 16 5 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -26.05 11.32 55.43 0.63 -25.43 16 8 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 C -0.10 -2.11 4.09 -26.73 -0.11 -2.22 16 13 C -0.09 -1.59 2.11 -90.49 -0.19 -1.79 16 14 C -0.11 -1.90 5.09 -26.58 -0.14 -2.04 16 15 C 0.06 0.82 6.55 -3.77 -0.02 0.79 16 16 N -0.69 -9.14 6.85 -113.74 -0.78 -9.92 16 17 C 0.06 0.77 6.55 -3.83 -0.03 0.75 16 18 C -0.11 -1.72 5.38 -26.65 -0.14 -1.86 16 19 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 20 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 21 H 0.01 0.15 6.46 -51.93 -0.34 -0.18 16 22 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 23 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.06 1.19 6.35 -51.93 -0.33 0.86 16 26 H 0.08 1.43 6.59 -51.93 -0.34 1.08 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.33 3.58 8.90 -39.29 -0.35 3.23 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 261.82 15.07 3.95 3.95 Total: -1.00 -28.93 261.82 -7.89 -36.82 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -5.77 Total: -0.49 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -0.89 Total: -21.62 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: -0.15 Total: -35.34 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.93 -7.89 -36.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261233030.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.521 kcal (2) G-P(sol) polarization free energy of solvation -28.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds