Wall clock time and date at job start Mon Mar 30 2020 01:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47314 * 2 1 4 4 C 1.50699 * 109.47206 * 119.99812 * 2 1 3 5 5 H 1.08006 * 120.00274 * 119.99673 * 4 2 1 6 6 C 1.37873 * 120.00339 * 299.99883 * 4 2 1 7 7 N 1.31516 * 119.99599 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00331 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47021 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.46960 * 120.00210 * 8 6 4 11 11 H 1.48503 * 109.47029 * 239.99851 * 8 6 4 12 12 C 1.52999 * 109.47160 * 239.99770 * 2 1 3 13 13 C 1.53000 * 109.47109 * 64.99783 * 12 2 1 14 14 C 1.53120 * 109.52168 * 65.13059 * 13 12 2 15 15 C 1.53166 * 109.20873 * 177.56393 * 14 13 12 16 16 N 1.46845 * 109.55463 * 300.85535 * 15 14 13 17 17 C 1.46848 * 111.19518 * 61.74755 * 16 15 14 18 18 C 1.53037 * 109.52381 * 298.25146 * 17 16 15 19 19 H 1.09003 * 109.47269 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.47027 * 300.00221 * 1 2 3 21 21 H 1.09002 * 109.47384 * 59.99875 * 1 2 3 22 22 H 0.97000 * 119.99987 * 180.02562 * 7 6 4 23 23 H 1.09007 * 109.47195 * 305.00445 * 12 2 1 24 24 H 1.08998 * 109.47318 * 185.00372 * 12 2 1 25 25 H 1.09002 * 109.52286 * 305.00287 * 13 12 2 26 26 H 1.09004 * 109.49930 * 297.56596 * 14 13 12 27 27 H 1.08997 * 109.50353 * 57.67812 * 14 13 12 28 28 H 1.09003 * 109.44926 * 180.83262 * 15 14 13 29 29 H 1.09002 * 109.44150 * 60.87652 * 15 14 13 30 30 H 1.00906 * 111.00175 * 185.84140 * 16 15 14 31 31 H 1.09006 * 109.46097 * 178.23945 * 17 16 15 32 32 H 1.08996 * 109.46046 * 58.26729 * 17 16 15 33 33 H 1.08996 * 109.50616 * 299.24564 * 18 17 16 34 34 H 1.08993 * 109.53667 * 179.13827 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1203 4.0080 9 1 3.1465 -2.2870 3.6038 10 1 3.1466 -0.1873 4.8165 11 1 1.1661 -1.5865 4.8162 12 6 2.0399 -0.7213 -1.2492 13 6 1.6351 0.0688 -2.4953 14 6 2.3472 1.4244 -2.4954 15 6 1.9847 2.1840 -3.7750 16 7 2.3907 1.3963 -4.9459 17 6 1.6843 0.1097 -4.9912 18 6 2.0379 -0.7119 -3.7495 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 0.7096 1.1619 3.4843 23 1 1.6052 -1.7199 -1.2951 24 1 3.1262 -0.7996 -1.2055 25 1 0.5562 0.2240 -2.4936 26 1 2.0315 2.0012 -1.6260 27 1 3.4254 1.2691 -2.4577 28 1 2.5013 3.1437 -3.7861 29 1 0.9079 2.3508 -3.8052 30 1 2.2491 1.9168 -5.7987 31 1 1.9828 -0.4372 -5.8856 32 1 0.6090 0.2865 -5.0157 33 1 3.1112 -0.9008 -3.7315 34 1 1.5018 -1.6606 -3.7753 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261233030.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:58 Heat of formation + Delta-G solvation = -48.405645 kcal Electronic energy + Delta-G solvation = -13018.875752 eV Core-core repulsion = 10949.427330 eV Total energy + Delta-G solvation = -2069.448422 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.84876 -36.83833 -34.28638 -31.91535 -31.50752 -27.44236 -27.13116 -23.97365 -23.43540 -21.10994 -20.19413 -18.33423 -17.44056 -16.61132 -15.58926 -15.47669 -15.09714 -14.86554 -14.36486 -14.10031 -13.69119 -13.23532 -13.04203 -12.83100 -12.82626 -12.45388 -12.17207 -12.07677 -11.83142 -11.55080 -11.46403 -11.00663 -10.69857 -10.63050 -10.34730 -9.35095 -8.07251 -6.20912 1.39022 1.40664 1.52241 2.43727 3.19517 3.36442 3.97157 3.98812 4.02678 4.35771 4.51581 4.60701 4.66471 4.74709 4.76991 4.90623 4.97004 5.03844 5.07181 5.12704 5.24799 5.30032 5.36303 5.46268 5.48268 5.63545 5.67903 6.04303 6.11431 6.20766 6.42873 6.60600 6.92650 7.47210 8.97306 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.067107 B = 0.007978 C = 0.007747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.145815 B = 3508.864235 C = 3613.250152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.038 3.962 3 H 0.003 0.997 4 C -0.534 4.534 5 H 0.048 0.952 6 C 0.010 3.990 7 N -0.919 5.919 8 Si 0.952 3.048 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.280 1.280 12 C -0.090 4.090 13 C -0.084 4.084 14 C -0.109 4.109 15 C 0.064 3.936 16 N -0.695 5.695 17 C 0.061 3.939 18 C -0.110 4.110 19 H 0.021 0.979 20 H 0.049 0.951 21 H 0.030 0.970 22 H 0.259 0.741 23 H 0.044 0.956 24 H 0.038 0.962 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.082 0.918 29 H 0.028 0.972 30 H 0.353 0.647 31 H 0.091 0.909 32 H 0.030 0.970 33 H 0.060 0.940 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.642 0.162 -13.114 13.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.020 3.980 3 H 0.021 0.979 4 C -0.572 4.572 5 H 0.067 0.933 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.778 3.222 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.205 1.205 12 C -0.128 4.128 13 C -0.102 4.102 14 C -0.147 4.147 15 C -0.065 4.065 16 N -0.328 5.328 17 C -0.068 4.068 18 C -0.148 4.148 19 H 0.040 0.960 20 H 0.068 0.932 21 H 0.049 0.951 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.047 0.953 30 H 0.172 0.828 31 H 0.109 0.891 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.120 0.006 -12.680 12.729 hybrid contribution -0.693 -0.008 1.033 1.244 sum 0.427 -0.002 -11.646 11.654 Atomic orbital electron populations 1.21658 0.98800 0.98367 0.99390 1.18665 0.92638 0.94696 0.92006 0.97911 1.21692 1.30792 1.12294 0.92426 0.93348 1.25750 0.95412 0.95779 1.01894 1.70034 1.37951 1.24221 1.23676 0.85602 0.78205 0.78763 0.79674 1.19270 1.20593 1.20542 1.21515 0.98850 0.98037 0.94352 1.21191 0.99207 0.95271 0.94576 1.21607 1.00151 0.96184 0.96797 1.21882 0.97877 0.96464 0.90305 1.60237 1.61092 1.05810 1.05650 1.21926 0.95594 0.90744 0.98508 1.21633 1.01489 0.98153 0.93492 0.95976 0.93177 0.95133 0.93145 0.93769 0.94332 0.92390 0.93176 0.92622 0.89946 0.95337 0.82828 0.89074 0.95199 0.92113 0.91137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.20 8.73 71.98 0.63 -5.58 16 2 C 0.04 1.97 2.17 -11.54 -0.03 1.95 16 3 H 0.00 0.16 6.41 -2.39 -0.02 0.14 16 4 C -0.53 -30.48 8.56 25.60 0.22 -30.27 16 5 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 6 C 0.01 0.55 5.30 84.65 0.45 1.00 16 7 N -0.92 -54.49 11.32 21.45 0.24 -54.25 16 8 Si 0.95 44.74 29.54 68.60 2.03 46.77 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 C -0.09 -3.82 4.09 30.59 0.13 -3.70 16 13 C -0.08 -2.93 2.11 -10.71 -0.02 -2.95 16 14 C -0.11 -3.74 5.09 30.69 0.16 -3.59 16 15 C 0.06 1.71 6.55 86.37 0.57 2.28 16 16 N -0.70 -16.37 6.85 -513.77 -3.52 -19.88 16 17 C 0.06 1.41 6.55 86.33 0.57 1.98 16 18 C -0.11 -3.10 5.38 30.65 0.16 -2.94 16 19 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 20 H 0.05 2.78 6.07 -2.38 -0.01 2.76 16 21 H 0.03 1.33 6.46 -2.39 -0.02 1.31 16 22 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 23 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 24 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.06 2.09 6.35 -2.39 -0.02 2.08 16 26 H 0.05 1.94 6.59 -2.39 -0.02 1.93 16 27 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.35 6.33 8.90 -89.69 -0.80 5.54 16 31 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -61.51 261.82 1.84 -59.67 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.26 Total: 9.51 kcal Atomic # 6 Polarization: -44.64 SS G_CDS: 2.83 Total: -41.81 kcal Atomic # 7 Polarization: -70.86 SS G_CDS: -3.27 Total: -74.13 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -61.51 1.84 -59.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261233030.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.266 kcal (2) G-P(sol) polarization free energy of solvation -61.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds