Wall clock time and date at job start Mon Mar 30 2020 01:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47312 * 2 1 4 4 C 1.52998 * 109.46919 * 120.00084 * 2 1 3 5 5 H 1.09005 * 115.55242 * 79.16384 * 4 2 1 6 6 C 1.53004 * 117.49750 * 224.82602 * 4 2 1 7 7 C 1.52996 * 117.49776 * 293.48893 * 4 2 1 8 8 C 1.52994 * 117.50133 * 0.02562 * 7 4 2 9 9 C 1.53002 * 117.49841 * 145.00184 * 7 4 2 10 10 N 1.46501 * 109.47048 * 240.00035 * 2 1 3 11 11 C 1.46501 * 120.00095 * 300.00063 * 10 2 1 12 12 C 1.36937 * 119.99822 * 120.00315 * 10 2 1 13 13 H 1.07994 * 120.00280 * 344.70018 * 12 10 2 14 14 C 1.38815 * 119.99807 * 164.98164 * 12 10 2 15 15 N 1.31618 * 120.00034 * 346.92998 * 14 12 10 16 16 Si 1.86801 * 119.99854 * 166.92911 * 14 12 10 17 17 H 1.48507 * 109.46908 * 60.00060 * 16 14 12 18 18 H 1.48498 * 109.46971 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47296 * 299.99757 * 16 14 12 20 20 H 1.08997 * 109.47113 * 307.54167 * 1 2 3 21 21 H 1.09003 * 109.47269 * 67.54540 * 1 2 3 22 22 H 1.09003 * 109.47003 * 187.54243 * 1 2 3 23 23 H 1.08996 * 117.50248 * 214.98011 * 6 4 2 24 24 H 1.09002 * 117.49448 * 0.02562 * 6 4 2 25 25 H 1.09006 * 109.47181 * 70.34128 * 8 7 4 26 26 H 1.08997 * 109.47488 * 190.34019 * 8 7 4 27 27 H 1.08999 * 109.47453 * 310.34412 * 8 7 4 28 28 H 1.09003 * 109.47604 * 59.99825 * 9 7 4 29 29 H 1.09003 * 109.47305 * 180.02562 * 9 7 4 30 30 H 1.09008 * 109.46856 * 300.00018 * 9 7 4 31 31 H 1.09004 * 109.46907 * 265.56668 * 11 10 2 32 32 H 1.08994 * 109.47056 * 25.56527 * 11 10 2 33 33 H 1.08996 * 109.47257 * 145.57204 * 11 10 2 34 34 H 0.97000 * 120.00114 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 2.0223 -1.8102 1.2035 6 6 3.1829 -0.0653 2.0266 7 6 1.7654 -0.0665 2.6045 8 6 1.0014 1.2590 2.6069 9 6 1.4871 -0.9904 3.7919 10 7 2.0183 -0.6906 -1.1962 11 6 1.6644 -2.0932 -1.4281 12 6 2.8056 -0.0251 -2.0975 13 1 2.8668 1.0527 -2.0687 14 6 3.5205 -0.7356 -3.0521 15 7 3.6521 -2.0403 -2.9394 16 14 4.2957 0.1602 -4.4965 17 1 5.2682 1.1631 -3.9927 18 1 4.9987 -0.8174 -5.3655 19 1 3.2368 0.8470 -5.2790 20 1 -0.3633 0.6262 0.8148 21 1 -0.3634 0.3925 -0.9498 22 1 -0.3633 -1.0188 0.1349 23 1 3.9170 -0.7226 2.4926 24 1 3.5712 0.8803 1.6482 25 1 -0.0366 1.0807 2.3260 26 1 1.0377 1.6975 3.6041 27 1 1.4587 1.9433 1.8922 28 1 2.3462 -1.6411 3.9552 29 1 1.3100 -0.3910 4.6850 30 1 0.6064 -1.5972 3.5815 31 1 2.4549 -2.7362 -1.0409 32 1 0.7284 -2.3208 -0.9180 33 1 1.5467 -2.2662 -2.4977 34 1 4.1520 -2.5367 -3.6063 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306592198.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:03 Heat of formation + Delta-G solvation = 40.082957 kcal Electronic energy + Delta-G solvation = -13212.664710 eV Core-core repulsion = 11147.053441 eV Total energy + Delta-G solvation = -2065.611268 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.56517 -35.23441 -31.78946 -28.96982 -28.76406 -27.00985 -25.90379 -23.47986 -21.71687 -19.42654 -17.86228 -16.76104 -15.25700 -14.23985 -14.13286 -13.70959 -13.20355 -12.99639 -12.62571 -12.36583 -12.06380 -11.83463 -11.43683 -11.29110 -10.89902 -10.85369 -10.72477 -10.57884 -10.25042 -10.11875 -9.77302 -9.72895 -9.15796 -8.87301 -8.42541 -6.72248 -5.61611 -3.00945 3.43853 3.48941 3.49998 4.27819 4.57672 5.13591 5.20895 5.44356 5.48305 5.53381 5.70323 5.87439 5.93189 6.09654 6.12450 6.17704 6.27241 6.31430 6.34405 6.41379 6.42962 6.62918 6.73793 6.77760 6.92655 7.04385 7.17229 7.59308 7.79441 7.93417 8.48370 9.34738 10.00019 10.46725 11.43275 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.050525 B = 0.009606 C = 0.009521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.052628 B = 2914.088927 C = 2940.114067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.203 3.797 3 H 0.059 0.941 4 C -0.133 4.133 5 H 0.095 0.905 6 C -0.166 4.166 7 C -0.146 4.146 8 C -0.113 4.113 9 C -0.109 4.109 10 N -0.597 5.597 11 C 0.166 3.834 12 C -0.245 4.245 13 H 0.069 0.931 14 C -0.005 4.005 15 N -0.913 5.913 16 Si 0.904 3.096 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.286 1.286 20 H 0.052 0.948 21 H 0.050 0.950 22 H 0.045 0.955 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.019 0.981 32 H -0.005 1.005 33 H 0.053 0.947 34 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.849 3.216 9.597 11.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.095 3.905 3 H 0.077 0.923 4 C -0.153 4.153 5 H 0.113 0.887 6 C -0.203 4.203 7 C -0.146 4.146 8 C -0.170 4.170 9 C -0.166 4.166 10 N -0.319 5.319 11 C 0.022 3.978 12 C -0.374 4.374 13 H 0.086 0.914 14 C -0.202 4.202 15 N -0.560 5.560 16 Si 0.734 3.266 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.213 1.213 20 H 0.070 0.930 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.100 0.900 24 H 0.106 0.894 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.013 0.987 33 H 0.072 0.928 34 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.752 3.088 9.445 11.015 hybrid contribution 0.679 0.264 -0.797 1.079 sum -4.074 3.352 8.648 10.130 Atomic orbital electron populations 1.22422 0.98477 1.00847 1.00591 1.19892 0.91545 0.94609 0.84461 0.92288 1.23216 1.00997 0.99360 0.91754 0.88727 1.23097 0.90595 1.02531 1.04109 1.21560 0.99154 0.98140 0.95787 1.21437 0.99924 0.94807 1.00804 1.21277 1.01142 0.98190 0.96010 1.44035 1.57809 1.09751 1.20278 1.20782 0.93304 0.84126 0.99601 1.19247 1.19895 0.90610 1.07667 0.91365 1.24872 0.99241 0.95792 1.00331 1.70116 1.44654 1.05653 1.35562 0.86332 0.78931 0.78499 0.82794 1.21158 1.21720 1.21270 0.92971 0.93091 0.93548 0.89973 0.89381 0.91880 0.93298 0.92427 0.92945 0.92932 0.92734 0.96256 0.98675 0.92820 0.93923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 8.79 37.16 0.33 -2.68 16 2 C 0.20 4.28 2.30 -67.93 -0.16 4.12 16 3 H 0.06 1.27 6.86 -51.93 -0.36 0.91 16 4 C -0.13 -2.54 4.82 -90.62 -0.44 -2.97 16 5 H 0.09 1.95 7.57 -51.93 -0.39 1.56 16 6 C -0.17 -2.92 9.48 -26.69 -0.25 -3.17 16 7 C -0.15 -2.24 2.63 -154.47 -0.41 -2.65 16 8 C -0.11 -1.54 8.27 37.15 0.31 -1.24 16 9 C -0.11 -1.44 9.85 37.16 0.37 -1.07 16 10 N -0.60 -15.40 2.82 -173.49 -0.49 -15.89 16 11 C 0.17 4.27 7.95 59.85 0.48 4.75 16 12 C -0.24 -6.90 9.70 -15.06 -0.15 -7.04 16 13 H 0.07 1.87 7.75 -52.49 -0.41 1.47 16 14 C -0.01 -0.16 5.14 -17.43 -0.09 -0.25 16 15 N -0.91 -27.27 10.27 55.49 0.57 -26.70 16 16 Si 0.90 22.41 29.57 -169.99 -5.03 17.38 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H 0.05 0.81 4.90 -51.93 -0.25 0.55 16 21 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.05 0.84 6.97 -51.93 -0.36 0.48 16 23 H 0.08 1.38 8.05 -51.93 -0.42 0.96 16 24 H 0.09 1.57 8.07 -51.93 -0.42 1.15 16 25 H 0.06 0.83 5.84 -51.93 -0.30 0.52 16 26 H 0.05 0.58 8.10 -51.93 -0.42 0.16 16 27 H 0.06 0.82 7.16 -51.93 -0.37 0.45 16 28 H 0.05 0.68 7.90 -51.93 -0.41 0.27 16 29 H 0.05 0.60 8.05 -51.93 -0.42 0.18 16 30 H 0.05 0.70 8.14 -51.92 -0.42 0.27 16 31 H 0.02 0.53 7.61 -51.93 -0.40 0.14 16 32 H -0.01 -0.12 6.59 -51.93 -0.34 -0.46 16 33 H 0.05 1.49 6.72 -51.93 -0.35 1.14 16 34 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 265.63 15.07 4.00 4.00 Total: -1.00 -29.64 265.63 -6.56 -36.19 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -5.60 Total: -2.78 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -0.01 Total: -12.20 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: 0.08 Total: -42.59 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.03 Total: 17.38 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.64 -6.56 -36.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306592198.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.275 kcal (2) G-P(sol) polarization free energy of solvation -29.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds