Wall clock time and date at job start Mon Mar 30 2020 01:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47467 * 2 1 4 4 C 1.53000 * 109.47148 * 120.00457 * 2 1 3 5 5 H 1.08999 * 115.55522 * 85.52758 * 4 2 1 6 6 C 1.53003 * 117.49390 * 299.86142 * 4 2 1 7 7 C 1.52994 * 60.00188 * 252.51270 * 6 4 2 8 8 C 1.53003 * 117.50099 * 252.51618 * 7 6 4 9 9 C 1.53001 * 117.50131 * 107.49115 * 7 6 4 10 10 N 1.46503 * 109.46937 * 239.99674 * 2 1 3 11 11 C 1.46499 * 120.00202 * 300.00426 * 10 2 1 12 12 C 1.36936 * 119.99537 * 120.00050 * 10 2 1 13 13 H 1.08007 * 120.00343 * 38.88848 * 12 10 2 14 14 C 1.38819 * 119.99975 * 218.88094 * 12 10 2 15 15 N 1.31618 * 119.99575 * 26.47117 * 14 12 10 16 16 Si 1.86799 * 119.99883 * 206.46742 * 14 12 10 17 17 H 1.48498 * 109.47468 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47084 * 240.00044 * 16 14 12 19 19 H 1.48503 * 109.46991 * 120.00065 * 16 14 12 20 20 H 1.08994 * 109.46972 * 185.90126 * 1 2 3 21 21 H 1.08999 * 109.46690 * 305.90191 * 1 2 3 22 22 H 1.08996 * 109.46584 * 65.89796 * 1 2 3 23 23 H 1.09000 * 117.50083 * 0.02562 * 6 4 2 24 24 H 1.09000 * 117.49841 * 144.99867 * 6 4 2 25 25 H 1.08998 * 109.47698 * 128.61803 * 8 7 6 26 26 H 1.09000 * 109.47160 * 248.62038 * 8 7 6 27 27 H 1.09006 * 109.47223 * 8.61710 * 8 7 6 28 28 H 1.08997 * 109.46833 * 355.18917 * 9 7 6 29 29 H 1.08997 * 109.46808 * 115.19218 * 9 7 6 30 30 H 1.09005 * 109.46827 * 235.19289 * 9 7 6 31 31 H 1.08993 * 109.46872 * 275.34020 * 11 10 2 32 32 H 1.08994 * 109.46975 * 35.34005 * 11 10 2 33 33 H 1.09003 * 109.46897 * 155.33993 * 11 10 2 34 34 H 0.96995 * 120.00049 * 5.30898 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 2.1245 -1.8048 1.1650 6 6 1.6384 -0.1477 2.6095 7 6 3.0765 0.0038 2.1100 8 6 4.1529 -0.8475 2.7866 9 6 3.5237 1.3946 1.6556 10 7 2.0183 -0.6907 -1.1962 11 6 1.6644 -2.0932 -1.4280 12 6 2.8056 -0.0252 -2.0975 13 1 3.5570 0.6684 -1.7497 14 6 2.6381 -0.2420 -3.4584 15 7 1.4703 -0.6322 -3.9237 16 14 4.0699 0.0200 -4.6291 17 1 5.2642 0.4548 -3.8611 18 1 3.7123 1.0645 -5.6224 19 1 4.3715 -1.2514 -5.3346 20 1 -0.3633 -1.0222 0.1057 21 1 -0.3633 0.6026 0.8324 22 1 -0.3632 0.4197 -0.9381 23 1 1.0105 0.7432 2.6146 24 1 1.4586 -0.8538 3.4203 25 1 4.7285 -1.3765 2.0271 26 1 4.8170 -0.2030 3.3625 27 1 3.6799 -1.5694 3.4524 28 1 2.6746 2.0773 1.6861 29 1 4.3073 1.7593 2.3197 30 1 3.9079 1.3380 0.6370 31 1 2.3618 -2.7372 -0.8925 32 1 0.6517 -2.2765 -1.0690 33 1 1.7162 -2.3094 -2.4951 34 1 0.7071 -0.6940 -3.3283 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306592199.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:06 Heat of formation + Delta-G solvation = 27.500212 kcal Electronic energy + Delta-G solvation = -13285.696998 eV Core-core repulsion = 11219.540101 eV Total energy + Delta-G solvation = -2066.156897 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.60050 -35.42530 -31.90272 -29.35146 -28.02914 -27.18756 -25.88528 -23.70973 -21.67344 -19.37042 -17.89919 -17.25155 -15.09296 -14.43769 -13.86700 -13.73894 -13.42247 -13.27214 -12.70451 -12.22467 -12.10649 -11.91692 -11.51430 -11.37488 -11.14067 -10.84166 -10.78365 -10.61765 -10.46200 -10.05185 -9.80588 -9.56399 -9.22984 -8.90845 -8.25595 -6.69843 -5.96113 -3.29701 3.53044 3.55686 3.69993 4.19845 4.62453 5.07390 5.19527 5.27239 5.44145 5.47600 5.67073 5.89517 5.96544 6.03324 6.11777 6.18431 6.20944 6.27483 6.32458 6.39818 6.47625 6.54043 6.60935 6.72043 6.79210 6.85323 7.08530 7.12355 7.29626 8.21132 8.67015 9.24367 9.90644 10.40454 11.22295 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.038868 B = 0.011393 C = 0.010025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.213258 B = 2457.144853 C = 2792.446452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.194 3.806 3 H 0.069 0.931 4 C -0.136 4.136 5 H 0.094 0.906 6 C -0.182 4.182 7 C -0.129 4.129 8 C -0.110 4.110 9 C -0.112 4.112 10 N -0.590 5.590 11 C 0.118 3.882 12 C -0.351 4.351 13 H 0.048 0.952 14 C -0.019 4.019 15 N -0.906 5.906 16 Si 1.066 2.934 17 H -0.291 1.291 18 H -0.294 1.294 19 H -0.290 1.290 20 H 0.043 0.957 21 H 0.039 0.961 22 H 0.052 0.948 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.068 0.932 31 H -0.005 1.005 32 H 0.017 0.983 33 H 0.064 0.936 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.622 0.715 10.602 10.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.086 3.914 3 H 0.087 0.913 4 C -0.156 4.156 5 H 0.112 0.888 6 C -0.219 4.219 7 C -0.129 4.129 8 C -0.167 4.167 9 C -0.169 4.169 10 N -0.312 5.312 11 C -0.027 4.027 12 C -0.480 4.480 13 H 0.066 0.934 14 C -0.223 4.223 15 N -0.545 5.545 16 Si 0.896 3.104 17 H -0.217 1.217 18 H -0.221 1.221 19 H -0.217 1.217 20 H 0.062 0.938 21 H 0.058 0.942 22 H 0.072 0.928 23 H 0.106 0.894 24 H 0.101 0.899 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.013 0.987 32 H 0.036 0.964 33 H 0.082 0.918 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.119 0.583 8.989 9.254 hybrid contribution -0.572 0.026 1.682 1.777 sum 1.547 0.609 10.671 10.800 Atomic orbital electron populations 1.22226 0.98826 1.00360 1.00284 1.20099 0.90927 0.95167 0.85184 0.91326 1.23119 1.01259 0.99251 0.91958 0.88812 1.23197 0.97469 1.02990 0.98273 1.21483 0.90219 0.97523 1.03711 1.21299 0.97417 0.98563 0.99392 1.21317 1.00353 0.93562 1.01628 1.43798 1.58823 1.06476 1.22142 1.21019 0.95068 0.85523 1.01118 1.19857 1.13052 1.26907 0.88199 0.93415 1.25946 1.01029 0.99239 0.96076 1.70700 0.99554 1.46356 1.37885 0.83532 0.75065 0.76427 0.75357 1.21725 1.22126 1.21699 0.93752 0.94196 0.92849 0.89425 0.89944 0.92336 0.92841 0.93167 0.92894 0.93175 0.91329 0.98657 0.96400 0.91767 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 8.78 37.16 0.33 -2.80 16 2 C 0.19 4.16 2.77 -67.93 -0.19 3.98 16 3 H 0.07 1.54 5.72 -51.93 -0.30 1.24 16 4 C -0.14 -2.52 4.94 -90.62 -0.45 -2.97 16 5 H 0.09 1.84 7.29 -51.93 -0.38 1.46 16 6 C -0.18 -2.79 9.09 -26.73 -0.24 -3.03 16 7 C -0.13 -2.12 2.70 -154.51 -0.42 -2.53 16 8 C -0.11 -1.57 9.85 37.16 0.37 -1.21 16 9 C -0.11 -1.80 8.37 37.16 0.31 -1.48 16 10 N -0.59 -15.03 2.46 -173.48 -0.43 -15.46 16 11 C 0.12 2.89 8.87 59.85 0.53 3.42 16 12 C -0.35 -9.90 9.27 -15.06 -0.14 -10.04 16 13 H 0.05 1.37 7.96 -52.48 -0.42 0.96 16 14 C -0.02 -0.55 4.73 -17.43 -0.08 -0.64 16 15 N -0.91 -27.35 12.35 55.49 0.69 -26.67 16 16 Si 1.07 25.65 29.99 -169.99 -5.10 20.55 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H 0.04 0.85 6.97 -51.93 -0.36 0.49 16 21 H 0.04 0.68 7.51 -51.93 -0.39 0.29 16 22 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 23 H 0.09 1.30 7.57 -51.93 -0.39 0.91 16 24 H 0.08 1.14 8.05 -51.93 -0.42 0.72 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.05 0.68 7.89 -51.93 -0.41 0.27 16 27 H 0.05 0.66 7.90 -51.93 -0.41 0.25 16 28 H 0.05 0.82 7.57 -51.93 -0.39 0.42 16 29 H 0.05 0.69 7.87 -51.93 -0.41 0.28 16 30 H 0.07 1.27 7.81 -51.93 -0.41 0.87 16 31 H 0.00 -0.11 7.87 -51.93 -0.41 -0.52 16 32 H 0.02 0.40 6.58 -51.93 -0.34 0.05 16 33 H 0.06 1.73 5.83 -51.93 -0.30 1.43 16 34 H 0.27 8.22 7.41 -40.82 -0.30 7.92 16 LS Contribution 269.58 15.07 4.06 4.06 Total: -1.00 -29.55 269.58 -6.44 -36.00 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.68 Total: -1.18 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 0.02 Total: -17.31 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.26 Total: -42.12 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.10 Total: 20.55 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.55 -6.44 -36.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306592199.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.496 kcal (2) G-P(sol) polarization free energy of solvation -29.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds