Wall clock time and date at job start Mon Mar 30 2020 01:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47467 * 2 1 4 4 C 1.53000 * 109.47148 * 120.00457 * 2 1 3 5 5 H 1.08999 * 115.55522 * 85.52758 * 4 2 1 6 6 C 1.53003 * 117.49390 * 299.86142 * 4 2 1 7 7 C 1.52994 * 60.00188 * 252.51270 * 6 4 2 8 8 C 1.53003 * 117.50099 * 252.51618 * 7 6 4 9 9 C 1.53001 * 117.50131 * 107.49115 * 7 6 4 10 10 N 1.46503 * 109.46937 * 239.99674 * 2 1 3 11 11 C 1.46499 * 120.00202 * 300.00426 * 10 2 1 12 12 C 1.36936 * 119.99537 * 120.00050 * 10 2 1 13 13 H 1.08007 * 120.00343 * 38.88848 * 12 10 2 14 14 C 1.38819 * 119.99975 * 218.88094 * 12 10 2 15 15 N 1.31618 * 119.99575 * 26.47117 * 14 12 10 16 16 Si 1.86799 * 119.99883 * 206.46742 * 14 12 10 17 17 H 1.48498 * 109.47468 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47084 * 240.00044 * 16 14 12 19 19 H 1.48503 * 109.46991 * 120.00065 * 16 14 12 20 20 H 1.08994 * 109.46972 * 185.90126 * 1 2 3 21 21 H 1.08999 * 109.46690 * 305.90191 * 1 2 3 22 22 H 1.08996 * 109.46584 * 65.89796 * 1 2 3 23 23 H 1.09000 * 117.50083 * 0.02562 * 6 4 2 24 24 H 1.09000 * 117.49841 * 144.99867 * 6 4 2 25 25 H 1.08998 * 109.47698 * 128.61803 * 8 7 6 26 26 H 1.09000 * 109.47160 * 248.62038 * 8 7 6 27 27 H 1.09006 * 109.47223 * 8.61710 * 8 7 6 28 28 H 1.08997 * 109.46833 * 355.18917 * 9 7 6 29 29 H 1.08997 * 109.46808 * 115.19218 * 9 7 6 30 30 H 1.09005 * 109.46827 * 235.19289 * 9 7 6 31 31 H 1.08993 * 109.46872 * 275.34020 * 11 10 2 32 32 H 1.08994 * 109.46975 * 35.34005 * 11 10 2 33 33 H 1.09003 * 109.46897 * 155.33993 * 11 10 2 34 34 H 0.96995 * 120.00049 * 5.30898 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 2.1245 -1.8048 1.1650 6 6 1.6384 -0.1477 2.6095 7 6 3.0765 0.0038 2.1100 8 6 4.1529 -0.8475 2.7866 9 6 3.5237 1.3946 1.6556 10 7 2.0183 -0.6907 -1.1962 11 6 1.6644 -2.0932 -1.4280 12 6 2.8056 -0.0252 -2.0975 13 1 3.5570 0.6684 -1.7497 14 6 2.6381 -0.2420 -3.4584 15 7 1.4703 -0.6322 -3.9237 16 14 4.0699 0.0200 -4.6291 17 1 5.2642 0.4548 -3.8611 18 1 3.7123 1.0645 -5.6224 19 1 4.3715 -1.2514 -5.3346 20 1 -0.3633 -1.0222 0.1057 21 1 -0.3633 0.6026 0.8324 22 1 -0.3632 0.4197 -0.9381 23 1 1.0105 0.7432 2.6146 24 1 1.4586 -0.8538 3.4203 25 1 4.7285 -1.3765 2.0271 26 1 4.8170 -0.2030 3.3625 27 1 3.6799 -1.5694 3.4524 28 1 2.6746 2.0773 1.6861 29 1 4.3073 1.7593 2.3197 30 1 3.9079 1.3380 0.6370 31 1 2.3618 -2.7372 -0.8925 32 1 0.6517 -2.2765 -1.0690 33 1 1.7162 -2.3094 -2.4951 34 1 0.7071 -0.6940 -3.3283 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306592199.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:06 Heat of formation + Delta-G solvation = 11.461680 kcal Electronic energy + Delta-G solvation = -13286.392481 eV Core-core repulsion = 11219.540101 eV Total energy + Delta-G solvation = -2066.852380 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.04911 -37.28220 -33.83285 -31.11802 -29.45511 -28.46290 -27.88125 -25.48203 -23.45770 -20.85065 -19.41776 -19.27732 -16.80988 -16.08959 -15.68939 -15.46072 -15.11599 -14.61803 -14.42884 -13.78909 -13.50419 -13.28868 -13.09203 -12.86818 -12.83095 -12.64180 -12.45050 -12.35319 -12.07087 -11.89827 -11.60777 -11.26730 -10.83646 -10.38004 -10.24570 -8.83107 -8.14106 -5.50930 1.56964 1.64331 1.81641 2.63548 2.87566 3.21759 3.56247 3.80393 3.92717 4.15633 4.24611 4.43519 4.54817 4.66511 4.68233 4.76528 4.80114 4.88164 4.91023 4.94502 5.03657 5.05846 5.11434 5.17718 5.23235 5.29076 5.43694 5.47735 5.54958 5.97699 6.41942 7.16462 7.80326 8.28500 8.96680 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.038868 B = 0.011393 C = 0.010025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.213258 B = 2457.144853 C = 2792.446452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.191 3.809 3 H 0.054 0.946 4 C -0.160 4.160 5 H 0.082 0.918 6 C -0.151 4.151 7 C -0.133 4.133 8 C -0.107 4.107 9 C -0.109 4.109 10 N -0.606 5.606 11 C 0.128 3.872 12 C -0.356 4.356 13 H 0.036 0.964 14 C -0.068 4.068 15 N -0.930 5.930 16 Si 1.114 2.886 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.286 1.286 20 H 0.047 0.953 21 H 0.071 0.929 22 H 0.024 0.976 23 H 0.097 0.903 24 H 0.106 0.894 25 H 0.042 0.958 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.034 0.966 31 H 0.004 0.996 32 H 0.032 0.968 33 H 0.034 0.966 34 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.104 0.951 12.475 12.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.085 3.915 3 H 0.072 0.928 4 C -0.180 4.180 5 H 0.100 0.900 6 C -0.188 4.188 7 C -0.134 4.134 8 C -0.164 4.164 9 C -0.166 4.166 10 N -0.329 5.329 11 C -0.017 4.017 12 C -0.486 4.486 13 H 0.054 0.946 14 C -0.266 4.266 15 N -0.570 5.570 16 Si 0.938 3.062 17 H -0.201 1.201 18 H -0.215 1.215 19 H -0.213 1.213 20 H 0.066 0.934 21 H 0.090 0.910 22 H 0.044 0.956 23 H 0.115 0.885 24 H 0.124 0.876 25 H 0.061 0.939 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.022 0.978 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.593 0.824 10.900 11.234 hybrid contribution -0.734 -0.028 1.182 1.392 sum 1.859 0.796 12.082 12.250 Atomic orbital electron populations 1.22100 0.97525 1.00959 1.00088 1.20178 0.91882 0.94449 0.85014 0.92814 1.22802 1.04654 0.98354 0.92218 0.90002 1.23266 0.96358 1.03051 0.96175 1.21684 0.91420 0.97342 1.02904 1.21302 0.97057 0.98835 0.99215 1.21283 1.01213 0.93946 1.00137 1.43996 1.59078 1.06933 1.22940 1.20873 0.96134 0.85446 0.99287 1.20010 1.13072 1.26547 0.88997 0.94584 1.27253 1.02369 0.98994 0.97956 1.70826 0.99883 1.48670 1.37584 0.82893 0.72835 0.76574 0.73850 1.20083 1.21520 1.21254 0.93386 0.90976 0.95648 0.88493 0.87551 0.93937 0.90845 0.91623 0.92525 0.90690 0.94741 0.97786 0.94912 0.94696 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.73 8.78 71.98 0.63 -5.09 16 2 C 0.19 8.17 2.77 44.99 0.12 8.29 16 3 H 0.05 2.42 5.72 -2.39 -0.01 2.41 16 4 C -0.16 -5.71 4.94 -10.79 -0.05 -5.76 16 5 H 0.08 3.12 7.29 -2.39 -0.02 3.10 16 6 C -0.15 -4.10 9.09 30.59 0.28 -3.82 16 7 C -0.13 -4.05 2.70 -52.18 -0.14 -4.20 16 8 C -0.11 -2.78 9.85 71.98 0.71 -2.07 16 9 C -0.11 -3.33 8.37 71.98 0.60 -2.73 16 10 N -0.61 -31.35 2.46 -702.77 -1.73 -33.07 16 11 C 0.13 6.34 8.87 127.77 1.13 7.47 16 12 C -0.36 -20.50 9.27 84.04 0.78 -19.72 16 13 H 0.04 2.13 7.96 -2.91 -0.02 2.11 16 14 C -0.07 -3.92 4.73 84.86 0.40 -3.52 16 15 N -0.93 -57.32 12.35 21.65 0.27 -57.05 16 16 Si 1.11 52.11 29.99 68.60 2.06 54.17 16 17 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 18 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 19 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 20 H 0.05 1.79 6.97 -2.39 -0.02 1.78 16 21 H 0.07 2.29 7.51 -2.39 -0.02 2.27 16 22 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.10 2.48 7.57 -2.39 -0.02 2.46 16 24 H 0.11 2.44 8.05 -2.39 -0.02 2.42 16 25 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.07 1.60 7.89 -2.39 -0.02 1.58 16 27 H 0.06 1.49 7.90 -2.38 -0.02 1.47 16 28 H 0.06 1.65 7.57 -2.39 -0.02 1.63 16 29 H 0.07 1.88 7.87 -2.39 -0.02 1.87 16 30 H 0.03 1.27 7.81 -2.38 -0.02 1.25 16 31 H 0.00 0.19 7.87 -2.39 -0.02 0.17 16 32 H 0.03 1.48 6.58 -2.39 -0.02 1.46 16 33 H 0.03 1.92 5.83 -2.39 -0.01 1.91 16 34 H 0.26 16.06 7.41 -92.71 -0.69 15.38 16 Total: -1.00 -63.98 269.58 6.19 -57.79 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 1.13 Total: 9.31 kcal Atomic # 6 Polarization: -35.61 SS G_CDS: 4.47 Total: -31.14 kcal Atomic # 7 Polarization: -88.66 SS G_CDS: -1.46 Total: -90.13 kcal Atomic # 14 Polarization: 52.11 SS G_CDS: 2.06 Total: 54.17 kcal Total: -63.98 6.19 -57.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306592199.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.252 kcal (2) G-P(sol) polarization free energy of solvation -63.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds