Wall clock time and date at job start Mon Mar 30 2020 02:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46499 * 109.47392 * 2 1 4 4 C 1.36937 * 120.00328 * 264.50955 * 3 2 1 5 5 H 1.07996 * 120.00107 * 146.68325 * 4 3 2 6 6 C 1.38807 * 119.99821 * 326.69333 * 4 3 2 7 7 N 1.31622 * 119.99829 * 337.17126 * 6 4 3 8 8 Si 1.86800 * 120.00378 * 157.17323 * 6 4 3 9 9 H 1.48503 * 109.46917 * 59.99621 * 8 6 4 10 10 H 1.48493 * 109.47331 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46939 * 299.99984 * 8 6 4 12 12 C 1.46507 * 119.99876 * 84.50767 * 3 2 1 13 13 H 1.08995 * 110.01390 * 359.94363 * 12 3 2 14 14 C 1.54260 * 110.03006 * 238.54713 * 12 3 2 15 15 C 1.54897 * 104.19575 * 217.10444 * 14 12 3 16 16 C 1.54893 * 102.74563 * 37.94695 * 15 14 12 17 17 H 1.08995 * 110.48899 * 80.86445 * 16 15 14 18 18 C 1.52999 * 110.48261 * 203.38020 * 16 15 14 19 19 C 1.54089 * 109.92650 * 121.41707 * 12 3 2 20 20 H 1.09000 * 109.47338 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47115 * 300.00199 * 1 2 3 22 22 H 1.09000 * 109.47075 * 59.99669 * 1 2 3 23 23 H 1.08993 * 109.47617 * 239.99799 * 2 1 3 24 24 H 1.09008 * 109.47235 * 119.99703 * 2 1 3 25 25 H 0.97010 * 120.00166 * 180.02562 * 7 6 4 26 26 H 1.09006 * 110.48659 * 98.42999 * 14 12 3 27 27 H 1.08999 * 110.49102 * 335.78633 * 14 12 3 28 28 H 1.08999 * 110.75454 * 279.63504 * 15 14 12 29 29 H 1.08997 * 110.91207 * 156.32952 * 15 14 12 30 30 H 1.08998 * 109.47434 * 56.75920 * 18 16 15 31 31 H 1.08997 * 109.46923 * 296.74982 * 18 16 15 32 32 H 1.09009 * 109.46597 * 176.75932 * 18 16 15 33 33 H 1.09006 * 110.15879 * 0.11860 * 19 12 3 34 34 H 1.09006 * 110.00657 * 238.62397 * 19 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3536 1.9889 -1.1804 5 1 2.1941 3.0496 -1.3061 6 6 2.8983 1.2416 -2.2156 7 7 3.5035 0.1018 -1.9567 8 14 2.7724 1.8534 -3.9761 9 1 3.4469 3.1713 -4.0915 10 1 3.4284 0.8807 -4.8863 11 1 1.3422 1.9949 -4.3498 12 6 2.1480 2.1123 1.2630 13 1 1.8382 1.4789 2.0942 14 6 1.2870 3.3916 1.2238 15 6 2.1332 4.4425 1.9847 16 6 3.5773 4.1090 1.5349 17 1 3.7821 4.5436 0.5566 18 6 4.5891 4.6133 2.5659 19 6 3.6068 2.5686 1.4582 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 3.8845 -0.4203 -2.6801 26 1 0.3363 3.2274 1.7312 27 1 1.1211 3.7085 0.1941 28 1 2.0257 4.3180 3.0623 29 1 1.8590 5.4539 1.6848 30 1 4.3626 4.1792 3.5397 31 1 4.5315 5.6999 2.6301 32 1 5.5941 4.3200 2.2622 33 1 4.2168 2.2484 0.6135 34 1 4.0057 2.1561 2.3850 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306600493.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:23 Heat of formation + Delta-G solvation = -16.370939 kcal Electronic energy + Delta-G solvation = -13379.990814 eV Core-core repulsion = 11311.931521 eV Total energy + Delta-G solvation = -2068.059293 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.60978 -36.63019 -33.39273 -31.92374 -30.35741 -28.61251 -26.25396 -25.08987 -22.54133 -21.19056 -20.36020 -18.11759 -17.09397 -16.43339 -15.88323 -15.22422 -14.89514 -14.37096 -14.17565 -13.73070 -13.65236 -13.30900 -12.81949 -12.66793 -12.57402 -12.33921 -12.12020 -12.01986 -11.73039 -11.54293 -11.42114 -11.30609 -11.17036 -11.03339 -10.40292 -8.49853 -7.76732 -5.30702 1.45417 1.48045 1.54110 2.54190 3.28259 3.66674 3.95149 3.97412 4.20659 4.54879 4.62404 4.67280 4.76230 4.84155 4.85714 4.93422 4.95716 4.98501 5.12233 5.13986 5.20192 5.29557 5.31464 5.45940 5.52542 5.61655 5.68772 5.70973 5.79317 5.92590 6.53352 7.24406 7.98831 8.47963 9.20723 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.031011 B = 0.013496 C = 0.011207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.682498 B = 2074.155579 C = 2497.836299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.133 3.867 3 N -0.595 5.595 4 C -0.239 4.239 5 H 0.056 0.944 6 C -0.046 4.046 7 N -0.922 5.922 8 Si 0.949 3.051 9 H -0.278 1.278 10 H -0.295 1.295 11 H -0.282 1.282 12 C 0.160 3.840 13 H 0.055 0.945 14 C -0.129 4.129 15 C -0.105 4.105 16 C -0.093 4.093 17 H 0.048 0.952 18 C -0.134 4.134 19 C -0.121 4.121 20 H 0.056 0.944 21 H 0.046 0.954 22 H 0.032 0.968 23 H 0.067 0.933 24 H 0.019 0.981 25 H 0.248 0.752 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.033 0.967 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.554 6.047 7.685 10.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.007 3.993 3 N -0.316 5.316 4 C -0.369 4.369 5 H 0.074 0.926 6 C -0.242 4.242 7 N -0.568 5.568 8 Si 0.778 3.222 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.208 1.208 12 C 0.053 3.947 13 H 0.073 0.927 14 C -0.168 4.168 15 C -0.143 4.143 16 C -0.112 4.112 17 H 0.066 0.934 18 C -0.191 4.191 19 C -0.161 4.161 20 H 0.075 0.925 21 H 0.065 0.935 22 H 0.051 0.949 23 H 0.085 0.915 24 H 0.037 0.963 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.467 5.918 7.585 9.932 hybrid contribution 0.181 -0.154 -1.296 1.318 sum -2.285 5.765 6.289 8.832 Atomic orbital electron populations 1.22140 0.98355 1.00043 1.00154 1.20912 0.91797 0.86367 1.00193 1.44233 1.73956 1.11441 1.01925 1.19047 1.33176 0.93640 0.91077 0.92623 1.25664 0.97905 0.98540 1.02058 1.70133 1.38216 1.17041 1.31390 0.85613 0.77665 0.77432 0.81457 1.20380 1.22129 1.20797 1.21314 0.93214 0.92663 0.87509 0.92713 1.22697 0.98214 0.96199 0.99700 1.22450 0.93682 0.98147 0.99995 1.21849 0.96129 0.94781 0.98406 0.93363 1.21739 0.97863 1.01180 0.98289 1.22584 0.98375 0.95774 0.99350 0.92549 0.93517 0.94906 0.91499 0.96308 0.94292 0.91966 0.93359 0.90203 0.91244 0.91867 0.91563 0.93570 0.94779 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.96 10.23 71.98 0.74 -5.23 16 2 C 0.13 6.47 5.91 86.38 0.51 6.98 16 3 N -0.59 -29.74 2.40 -673.63 -1.62 -31.36 16 4 C -0.24 -13.06 7.96 84.03 0.67 -12.40 16 5 H 0.06 3.06 6.74 -2.91 -0.02 3.05 16 6 C -0.05 -2.57 4.91 84.86 0.42 -2.16 16 7 N -0.92 -54.70 11.34 21.65 0.25 -54.46 16 8 Si 0.95 45.48 29.61 68.60 2.03 47.51 16 9 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 10 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 11 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 12 C 0.16 6.68 3.43 45.79 0.16 6.83 16 13 H 0.05 2.17 7.90 -2.39 -0.02 2.15 16 14 C -0.13 -4.66 6.40 31.67 0.20 -4.46 16 15 C -0.11 -3.09 6.33 31.89 0.20 -2.89 16 16 C -0.09 -3.09 3.45 -9.72 -0.03 -3.13 16 17 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 18 C -0.13 -3.48 9.11 71.98 0.66 -2.83 16 19 C -0.12 -4.91 5.85 31.39 0.18 -4.73 16 20 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 21 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 22 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.07 3.72 5.32 -2.39 -0.01 3.71 16 24 H 0.02 0.87 8.05 -2.38 -0.02 0.85 16 25 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 26 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 27 H 0.05 2.00 6.40 -2.39 -0.02 1.98 16 28 H 0.08 2.01 8.06 -2.39 -0.02 1.99 16 29 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.03 1.69 7.32 -2.38 -0.02 1.67 16 34 H 0.05 2.01 7.83 -2.38 -0.02 2.00 16 Total: -1.00 -60.21 267.47 5.39 -54.82 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 1.03 Total: 7.48 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 3.70 Total: -24.00 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -1.37 Total: -85.81 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -60.21 5.39 -54.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306600493.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.447 kcal (2) G-P(sol) polarization free energy of solvation -60.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds