Wall clock time and date at job start Mon Mar 30 2020 02:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47322 * 2 1 4 4 C 1.36940 * 120.00112 * 264.51404 * 3 2 1 5 5 H 1.07997 * 120.00304 * 146.67910 * 4 3 2 6 6 C 1.38819 * 120.00031 * 326.68126 * 4 3 2 7 7 N 1.31621 * 119.99707 * 337.18994 * 6 4 3 8 8 Si 1.86791 * 120.00094 * 157.18740 * 6 4 3 9 9 H 1.48507 * 109.47171 * 89.99956 * 8 6 4 10 10 H 1.48501 * 109.47612 * 209.99939 * 8 6 4 11 11 H 1.48505 * 109.47473 * 330.00113 * 8 6 4 12 12 C 1.46495 * 120.00165 * 84.51649 * 3 2 1 13 13 H 1.09003 * 110.01392 * 1.38879 * 12 3 2 14 14 C 1.53875 * 110.03636 * 122.83056 * 12 3 2 15 15 C 1.54258 * 106.59683 * 119.28355 * 14 12 3 16 16 C 1.54894 * 104.19984 * 23.61425 * 15 14 12 17 17 H 1.09006 * 110.75046 * 80.36435 * 16 15 14 18 18 C 1.52999 * 110.91628 * 203.66650 * 16 15 14 19 19 C 1.54264 * 110.03357 * 240.00005 * 12 3 2 20 20 H 1.08996 * 109.47676 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.46838 * 299.99910 * 1 2 3 22 22 H 1.09005 * 109.47557 * 59.99540 * 1 2 3 23 23 H 1.09005 * 109.46838 * 240.00090 * 2 1 3 24 24 H 1.08996 * 109.47419 * 120.00684 * 2 1 3 25 25 H 0.97001 * 119.99292 * 180.02562 * 7 6 4 26 26 H 1.08995 * 110.03462 * 238.57333 * 14 12 3 27 27 H 1.09005 * 110.02678 * 359.95150 * 14 12 3 28 28 H 1.09004 * 110.49288 * 264.93342 * 15 14 12 29 29 H 1.09010 * 110.48777 * 142.29084 * 15 14 12 30 30 H 1.08994 * 109.46869 * 175.95244 * 18 16 15 31 31 H 1.08994 * 109.47056 * 295.95525 * 18 16 15 32 32 H 1.08998 * 109.46736 * 55.95425 * 18 16 15 33 33 H 1.09005 * 110.48695 * 98.42587 * 19 12 3 34 34 H 1.09003 * 110.48585 * 335.78100 * 19 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3535 1.9889 -1.1805 5 1 2.1939 3.0496 -1.3062 6 6 2.8984 1.2416 -2.2157 7 7 3.5035 0.1018 -1.9568 8 14 2.7727 1.8536 -3.9761 9 1 3.9546 2.6949 -4.2933 10 1 2.7284 0.6932 -4.9017 11 1 1.5351 2.6593 -4.1329 12 6 2.1482 2.1122 1.2629 13 1 1.8629 1.4704 2.0965 14 6 3.5966 2.5996 1.4433 15 6 3.5369 4.1390 1.5215 16 6 2.0916 4.4399 1.9904 17 1 2.0008 4.3108 3.0690 18 6 1.6658 5.8502 1.5773 19 6 1.2590 3.3725 1.2378 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.8845 -0.4202 -2.6802 26 1 4.0147 2.1948 2.3649 27 1 4.2030 2.2914 0.5916 28 1 3.7189 4.5783 0.5406 29 1 4.2590 4.5125 2.2476 30 1 0.6241 6.0110 1.8547 31 1 2.2940 6.5825 2.0843 32 1 1.7760 5.9616 0.4987 33 1 0.3188 3.1864 1.7569 34 1 1.0731 3.6879 0.2111 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306600496.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:32 Heat of formation + Delta-G solvation = -2.229359 kcal Electronic energy + Delta-G solvation = -13399.559346 eV Core-core repulsion = 11332.113278 eV Total energy + Delta-G solvation = -2067.446068 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.00506 -34.83890 -31.38665 -30.42988 -28.57845 -27.03189 -24.63821 -23.30639 -20.79976 -19.33466 -18.95734 -16.17366 -15.23273 -14.81074 -14.06386 -13.61228 -13.01078 -12.90645 -12.63584 -12.35372 -11.80958 -11.58324 -11.29270 -10.88594 -10.80034 -10.52230 -10.39604 -10.21351 -10.12779 -10.04659 -9.91089 -9.55639 -9.45388 -9.35429 -8.35130 -6.48340 -5.70148 -3.20681 3.39687 3.47577 3.50948 4.54925 5.23693 5.34120 5.37803 5.51469 5.66455 5.95152 6.04790 6.10134 6.18758 6.34426 6.39102 6.47760 6.48613 6.56016 6.61192 6.68290 6.73719 6.80006 6.93072 6.96139 7.10791 7.23662 7.36703 7.44768 7.83913 7.92540 8.60797 9.30089 9.95810 10.51669 11.30804 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.030759 B = 0.013595 C = 0.011512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.087943 B = 2059.076905 C = 2431.567943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.137 3.863 3 N -0.581 5.581 4 C -0.241 4.241 5 H 0.062 0.938 6 C 0.004 3.996 7 N -0.891 5.891 8 Si 0.892 3.108 9 H -0.288 1.288 10 H -0.290 1.290 11 H -0.280 1.280 12 C 0.171 3.829 13 H 0.046 0.954 14 C -0.133 4.133 15 C -0.111 4.111 16 C -0.099 4.099 17 H 0.062 0.938 18 C -0.140 4.140 19 C -0.128 4.128 20 H 0.032 0.968 21 H 0.031 0.969 22 H 0.047 0.953 23 H 0.099 0.901 24 H 0.017 0.983 25 H 0.252 0.748 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.044 0.956 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.819 5.188 5.904 8.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.011 3.989 3 N -0.300 5.300 4 C -0.371 4.371 5 H 0.079 0.921 6 C -0.195 4.195 7 N -0.535 5.535 8 Si 0.722 3.278 9 H -0.215 1.215 10 H -0.217 1.217 11 H -0.205 1.205 12 C 0.063 3.937 13 H 0.064 0.936 14 C -0.172 4.172 15 C -0.149 4.149 16 C -0.118 4.118 17 H 0.081 0.919 18 C -0.197 4.197 19 C -0.168 4.168 20 H 0.051 0.949 21 H 0.050 0.950 22 H 0.066 0.934 23 H 0.116 0.884 24 H 0.035 0.965 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.732 5.039 5.783 8.142 hybrid contribution -0.057 0.258 -0.920 0.958 sum -2.789 5.297 4.863 7.713 Atomic orbital electron populations 1.22350 1.01157 0.98479 1.00269 1.20957 0.89591 0.86685 1.01650 1.44028 1.73665 1.11155 1.01198 1.18927 1.34385 0.93806 0.89982 0.92078 1.25038 0.97517 0.98015 0.98926 1.70009 1.36821 1.15820 1.30832 0.86470 0.78010 0.77824 0.85545 1.21470 1.21652 1.20527 1.20992 0.92096 0.91809 0.88822 0.93583 1.22589 0.99873 0.93866 1.00902 1.22311 0.95168 0.97345 1.00101 1.22061 0.96347 0.94514 0.98886 0.91909 1.21736 1.00124 0.96499 1.01336 1.22892 0.97311 0.96183 1.00405 0.94923 0.94993 0.93395 0.88361 0.96472 0.93783 0.94215 0.89835 0.91935 0.93524 0.93420 0.93586 0.92685 0.93701 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 10.23 37.16 0.38 -3.01 16 2 C 0.14 3.31 5.91 -4.04 -0.02 3.29 16 3 N -0.58 -14.39 2.41 -164.40 -0.40 -14.79 16 4 C -0.24 -6.48 7.89 -15.06 -0.12 -6.59 16 5 H 0.06 1.65 6.83 -52.49 -0.36 1.29 16 6 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 7 N -0.89 -25.65 11.34 55.49 0.63 -25.02 16 8 Si 0.89 21.70 29.61 -169.99 -5.03 16.66 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.17 3.64 3.43 -66.82 -0.23 3.41 16 13 H 0.05 0.95 7.89 -51.93 -0.41 0.54 16 14 C -0.13 -2.72 6.26 -25.62 -0.16 -2.88 16 15 C -0.11 -1.96 6.28 -25.07 -0.16 -2.12 16 16 C -0.10 -1.61 3.49 -88.63 -0.31 -1.92 16 17 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 18 C -0.14 -1.99 9.28 37.16 0.34 -1.64 16 19 C -0.13 -2.44 5.85 -25.07 -0.15 -2.58 16 20 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 21 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.10 2.67 5.32 -51.93 -0.28 2.39 16 24 H 0.02 0.40 8.04 -51.93 -0.42 -0.02 16 25 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.08 2.03 7.26 -51.93 -0.38 1.65 16 28 H 0.06 1.16 8.05 -51.93 -0.42 0.75 16 29 H 0.05 0.73 8.14 -51.92 -0.42 0.30 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 1.59 6.40 -51.93 -0.33 1.25 16 LS Contribution 267.74 15.07 4.03 4.03 Total: -1.00 -27.75 267.74 -7.22 -34.97 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -5.95 Total: -1.82 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -0.51 Total: -14.04 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.23 Total: -39.81 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.75 -7.22 -34.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306600496.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.740 kcal (2) G-P(sol) polarization free energy of solvation -27.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds