Wall clock time and date at job start Mon Mar 30 2020 02:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47322 * 2 1 4 4 C 1.36940 * 120.00112 * 264.51404 * 3 2 1 5 5 H 1.07997 * 120.00304 * 146.67910 * 4 3 2 6 6 C 1.38819 * 120.00031 * 326.68126 * 4 3 2 7 7 N 1.31621 * 119.99707 * 337.18994 * 6 4 3 8 8 Si 1.86791 * 120.00094 * 157.18740 * 6 4 3 9 9 H 1.48507 * 109.47171 * 89.99956 * 8 6 4 10 10 H 1.48501 * 109.47612 * 209.99939 * 8 6 4 11 11 H 1.48505 * 109.47473 * 330.00113 * 8 6 4 12 12 C 1.46495 * 120.00165 * 84.51649 * 3 2 1 13 13 H 1.09003 * 110.01392 * 1.38879 * 12 3 2 14 14 C 1.53875 * 110.03636 * 122.83056 * 12 3 2 15 15 C 1.54258 * 106.59683 * 119.28355 * 14 12 3 16 16 C 1.54894 * 104.19984 * 23.61425 * 15 14 12 17 17 H 1.09006 * 110.75046 * 80.36435 * 16 15 14 18 18 C 1.52999 * 110.91628 * 203.66650 * 16 15 14 19 19 C 1.54264 * 110.03357 * 240.00005 * 12 3 2 20 20 H 1.08996 * 109.47676 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.46838 * 299.99910 * 1 2 3 22 22 H 1.09005 * 109.47557 * 59.99540 * 1 2 3 23 23 H 1.09005 * 109.46838 * 240.00090 * 2 1 3 24 24 H 1.08996 * 109.47419 * 120.00684 * 2 1 3 25 25 H 0.97001 * 119.99292 * 180.02562 * 7 6 4 26 26 H 1.08995 * 110.03462 * 238.57333 * 14 12 3 27 27 H 1.09005 * 110.02678 * 359.95150 * 14 12 3 28 28 H 1.09004 * 110.49288 * 264.93342 * 15 14 12 29 29 H 1.09010 * 110.48777 * 142.29084 * 15 14 12 30 30 H 1.08994 * 109.46869 * 175.95244 * 18 16 15 31 31 H 1.08994 * 109.47056 * 295.95525 * 18 16 15 32 32 H 1.08998 * 109.46736 * 55.95425 * 18 16 15 33 33 H 1.09005 * 110.48695 * 98.42587 * 19 12 3 34 34 H 1.09003 * 110.48585 * 335.78100 * 19 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3535 1.9889 -1.1805 5 1 2.1939 3.0496 -1.3062 6 6 2.8984 1.2416 -2.2157 7 7 3.5035 0.1018 -1.9568 8 14 2.7727 1.8536 -3.9761 9 1 3.9546 2.6949 -4.2933 10 1 2.7284 0.6932 -4.9017 11 1 1.5351 2.6593 -4.1329 12 6 2.1482 2.1122 1.2629 13 1 1.8629 1.4704 2.0965 14 6 3.5966 2.5996 1.4433 15 6 3.5369 4.1390 1.5215 16 6 2.0916 4.4399 1.9904 17 1 2.0008 4.3108 3.0690 18 6 1.6658 5.8502 1.5773 19 6 1.2590 3.3725 1.2378 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.8845 -0.4202 -2.6802 26 1 4.0147 2.1948 2.3649 27 1 4.2030 2.2914 0.5916 28 1 3.7189 4.5783 0.5406 29 1 4.2590 4.5125 2.2476 30 1 0.6241 6.0110 1.8547 31 1 2.2940 6.5825 2.0843 32 1 1.7760 5.9616 0.4987 33 1 0.3188 3.1864 1.7569 34 1 1.0731 3.6879 0.2111 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306600496.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:32 Heat of formation + Delta-G solvation = -16.510006 kcal Electronic energy + Delta-G solvation = -13400.178601 eV Core-core repulsion = 11332.113278 eV Total energy + Delta-G solvation = -2068.065323 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.61460 -36.61452 -33.37301 -31.97727 -30.24833 -28.71125 -26.37899 -24.95334 -22.64673 -20.87634 -20.57712 -18.12987 -16.89806 -16.63212 -15.90179 -15.34356 -14.65040 -14.34271 -14.29859 -13.77577 -13.56530 -13.25034 -12.93695 -12.69871 -12.57694 -12.34825 -12.06810 -12.01672 -11.71073 -11.61313 -11.37744 -11.25554 -11.17715 -11.06211 -10.40522 -8.49595 -7.76606 -5.30358 1.44325 1.47466 1.56169 2.54294 3.28632 3.65338 3.89534 4.03043 4.22312 4.52791 4.58381 4.70876 4.79059 4.81707 4.87163 4.90530 4.95401 5.02469 5.07108 5.15957 5.23770 5.28971 5.33458 5.44939 5.51834 5.61645 5.66022 5.73130 5.79877 5.92735 6.53794 7.24586 7.98981 8.48174 9.20990 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.030759 B = 0.013595 C = 0.011512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.087943 B = 2059.076905 C = 2431.567943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.133 3.867 3 N -0.595 5.595 4 C -0.236 4.236 5 H 0.056 0.944 6 C -0.047 4.047 7 N -0.922 5.922 8 Si 0.948 3.052 9 H -0.287 1.287 10 H -0.293 1.293 11 H -0.274 1.274 12 C 0.160 3.840 13 H 0.054 0.946 14 C -0.130 4.130 15 C -0.107 4.107 16 C -0.089 4.089 17 H 0.085 0.915 18 C -0.136 4.136 19 C -0.121 4.121 20 H 0.055 0.945 21 H 0.045 0.955 22 H 0.032 0.968 23 H 0.067 0.933 24 H 0.018 0.982 25 H 0.248 0.752 26 H 0.054 0.946 27 H 0.036 0.964 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.040 0.960 33 H 0.059 0.941 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.728 6.536 7.180 10.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.007 3.993 3 N -0.316 5.316 4 C -0.366 4.366 5 H 0.073 0.927 6 C -0.243 4.243 7 N -0.568 5.568 8 Si 0.777 3.223 9 H -0.214 1.214 10 H -0.220 1.220 11 H -0.199 1.199 12 C 0.053 3.947 13 H 0.072 0.928 14 C -0.169 4.169 15 C -0.144 4.144 16 C -0.108 4.108 17 H 0.104 0.896 18 C -0.193 4.193 19 C -0.161 4.161 20 H 0.074 0.926 21 H 0.065 0.935 22 H 0.051 0.949 23 H 0.085 0.915 24 H 0.037 0.963 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.655 6.408 7.075 10.222 hybrid contribution 0.237 -0.180 -1.236 1.271 sum -3.419 6.228 5.840 9.196 Atomic orbital electron populations 1.22139 0.98343 1.00034 1.00166 1.20911 0.91809 0.86346 1.00194 1.44238 1.73959 1.11443 1.01914 1.19049 1.33009 0.93581 0.91000 0.92674 1.25665 0.98003 0.98542 1.02052 1.70137 1.38323 1.17040 1.31314 0.85570 0.77953 0.77113 0.81631 1.21359 1.21957 1.19944 1.21262 0.93184 0.92711 0.87545 0.92790 1.22490 0.98575 0.96328 0.99556 1.22271 0.97201 0.94821 1.00138 1.22043 0.94253 0.94805 0.99706 0.89633 1.21698 1.01473 0.95504 1.00660 1.22762 0.97932 0.95775 0.99588 0.92561 0.93544 0.94863 0.91498 0.96313 0.94310 0.92677 0.94486 0.93645 0.90882 0.92001 0.91494 0.94105 0.92235 0.93275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.95 10.23 71.98 0.74 -5.21 16 2 C 0.13 6.46 5.91 86.38 0.51 6.97 16 3 N -0.59 -29.69 2.41 -674.03 -1.62 -31.31 16 4 C -0.24 -12.86 7.89 84.03 0.66 -12.20 16 5 H 0.06 3.03 6.83 -2.91 -0.02 3.01 16 6 C -0.05 -2.63 4.91 84.86 0.42 -2.21 16 7 N -0.92 -54.63 11.34 21.65 0.25 -54.38 16 8 Si 0.95 45.41 29.61 68.60 2.03 47.44 16 9 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 10 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 11 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 12 C 0.16 6.67 3.43 45.72 0.16 6.83 16 13 H 0.05 2.14 7.89 -2.39 -0.02 2.13 16 14 C -0.13 -5.26 6.26 31.32 0.20 -5.07 16 15 C -0.11 -3.55 6.28 31.67 0.20 -3.35 16 16 C -0.09 -2.63 3.49 -9.50 -0.03 -2.66 16 17 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 18 C -0.14 -3.43 9.28 71.98 0.67 -2.76 16 19 C -0.12 -4.38 5.85 31.67 0.19 -4.19 16 20 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 21 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 22 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 23 H 0.07 3.72 5.32 -2.38 -0.01 3.71 16 24 H 0.02 0.87 8.04 -2.39 -0.02 0.85 16 25 H 0.25 14.26 8.31 -92.71 -0.77 13.48 16 26 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.04 1.83 7.26 -2.38 -0.02 1.81 16 28 H 0.04 1.65 8.05 -2.38 -0.02 1.64 16 29 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.95 8.14 -2.38 -0.02 1.94 16 34 H 0.05 2.03 6.40 -2.39 -0.02 2.02 16 Total: -1.00 -60.02 267.74 5.39 -54.63 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 1.03 Total: 7.48 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: 3.70 Total: -23.86 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -1.38 Total: -85.69 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -60.02 5.39 -54.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306600496.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.124 kcal (2) G-P(sol) polarization free energy of solvation -60.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds