Wall clock time and date at job start Mon Mar 30 2020 01:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47584 * 2 1 4 4 C 1.50707 * 109.47148 * 239.99699 * 2 1 3 5 5 H 1.07993 * 120.00192 * 245.37246 * 4 2 1 6 6 C 1.37875 * 119.99732 * 65.37303 * 4 2 1 7 7 N 1.31514 * 120.00255 * 185.16552 * 6 4 2 8 8 Si 1.86804 * 119.99866 * 5.17181 * 6 4 2 9 9 H 1.48503 * 109.46666 * 269.99366 * 8 6 4 10 10 H 1.48498 * 109.47514 * 29.99505 * 8 6 4 11 11 H 1.48501 * 109.47386 * 150.00034 * 8 6 4 12 12 N 1.46909 * 109.47474 * 119.99997 * 2 1 3 13 13 C 1.46888 * 110.99654 * 275.00072 * 12 2 1 14 14 H 1.08995 * 112.85557 * 334.65927 * 13 12 2 15 15 C 1.53779 * 113.61673 * 105.86335 * 13 12 2 16 16 C 1.54050 * 86.98831 * 89.15717 * 15 13 12 17 17 C 1.53782 * 87.07621 * 25.43193 * 16 15 13 18 18 C 1.52992 * 113.61658 * 220.02092 * 17 16 15 19 19 C 1.52999 * 113.68659 * 89.13263 * 17 16 15 20 20 H 1.08999 * 109.46930 * 294.99359 * 1 2 3 21 21 H 1.08995 * 109.46839 * 54.99780 * 1 2 3 22 22 H 1.09001 * 109.47403 * 175.00017 * 1 2 3 23 23 H 0.97000 * 120.00000 * 354.99915 * 7 6 4 24 24 H 1.00908 * 110.99403 * 38.95249 * 12 2 1 25 25 H 1.09003 * 113.61788 * 203.65906 * 15 13 12 26 26 H 1.09001 * 113.61176 * 334.56200 * 15 13 12 27 27 H 1.09000 * 113.61114 * 270.88375 * 16 15 13 28 28 H 1.09003 * 113.69699 * 139.99538 * 16 15 13 29 29 H 1.09000 * 109.47446 * 157.49442 * 18 17 16 30 30 H 1.09006 * 109.47455 * 277.50157 * 18 17 16 31 31 H 1.09006 * 109.47114 * 37.49655 * 18 17 16 32 32 H 1.09000 * 109.47391 * 322.46075 * 19 17 16 33 33 H 1.08996 * 109.47683 * 82.46412 * 19 17 16 34 34 H 1.09007 * 109.46887 * 202.46407 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5798 -1.6364 -1.1337 6 6 1.7930 -0.1784 -2.4797 7 7 2.1412 -0.8473 -3.5571 8 14 0.9742 1.4928 -2.6418 9 1 -0.4990 1.3179 -2.7073 10 1 1.3215 2.3304 -1.4658 11 1 1.4491 2.1586 -3.8814 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2226 2.3468 14 1 2.1951 1.2655 2.0508 15 6 0.9671 -0.0076 3.3801 16 6 1.9166 -1.0116 4.0609 17 6 3.0762 -0.2199 3.4339 18 6 4.2078 -1.1043 2.9066 19 6 3.5794 0.9299 4.3089 20 1 -0.3633 0.4342 0.9314 21 1 -0.3633 0.5895 -0.8418 22 1 -0.3634 -1.0237 -0.0896 23 1 2.6310 -1.6804 -3.4736 24 1 1.4495 -1.4980 1.4101 25 1 0.7489 0.8693 3.9898 26 1 0.0716 -0.4665 2.9610 27 1 1.8245 -2.0281 3.6782 28 1 1.8950 -0.9659 5.1498 29 1 4.7735 -0.5588 2.1513 30 1 4.8690 -1.3773 3.7291 31 1 3.7870 -2.0071 2.4637 32 1 2.7347 1.4001 4.8123 33 1 4.2759 0.5427 5.0526 34 1 4.0863 1.6663 3.6851 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307056217.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:39 Heat of formation + Delta-G solvation = 7.368657 kcal Electronic energy + Delta-G solvation = -13195.762413 eV Core-core repulsion = 11128.732547 eV Total energy + Delta-G solvation = -2067.029867 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.61416 -35.10214 -32.06188 -30.19601 -28.44675 -26.94952 -24.76591 -23.79261 -21.99207 -19.99497 -18.00785 -17.05279 -15.18372 -14.78067 -14.16289 -14.00469 -13.49227 -13.15844 -12.75402 -12.56685 -12.02008 -11.95420 -11.82144 -11.50675 -11.31598 -11.08103 -10.76585 -10.56955 -10.32851 -9.95815 -9.77918 -9.69588 -9.46298 -8.68927 -8.35235 -7.38395 -6.34330 -3.97831 3.37975 3.44775 3.59820 4.51921 4.71801 4.86290 5.01487 5.15747 5.35886 5.50493 5.59282 5.74025 5.85049 5.95011 6.05081 6.10810 6.11896 6.20105 6.26201 6.32969 6.38810 6.43885 6.57059 6.65007 6.79236 6.83130 6.93167 7.21184 7.86828 8.31595 8.39777 8.52799 9.06489 9.71298 11.05095 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.048638 B = 0.010063 C = 0.009540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.547406 B = 2781.874518 C = 2934.338123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.183 3.817 3 H 0.033 0.967 4 C -0.572 4.572 5 H 0.062 0.938 6 C 0.022 3.978 7 N -0.919 5.919 8 Si 1.057 2.943 9 H -0.286 1.286 10 H -0.282 1.282 11 H -0.291 1.291 12 N -0.649 5.649 13 C 0.080 3.920 14 H 0.072 0.928 15 C -0.175 4.175 16 C -0.129 4.129 17 C -0.087 4.087 18 C -0.115 4.115 19 C -0.124 4.124 20 H 0.025 0.975 21 H 0.045 0.955 22 H 0.049 0.951 23 H 0.266 0.734 24 H 0.330 0.670 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.034 0.966 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.798 2.808 14.270 14.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.073 3.927 3 H 0.050 0.950 4 C -0.611 4.611 5 H 0.080 0.920 6 C -0.181 4.181 7 N -0.555 5.555 8 Si 0.887 3.113 9 H -0.214 1.214 10 H -0.208 1.208 11 H -0.217 1.217 12 N -0.277 5.277 13 C -0.032 4.032 14 H 0.091 0.909 15 C -0.215 4.215 16 C -0.166 4.166 17 C -0.088 4.088 18 C -0.172 4.172 19 C -0.182 4.182 20 H 0.044 0.956 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.077 0.923 24 H 0.148 0.852 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.706 3.967 12.958 13.571 hybrid contribution -0.501 -1.025 1.343 1.762 sum -1.207 2.942 14.302 14.651 Atomic orbital electron populations 1.22847 1.01508 1.00881 0.98676 1.19777 0.88716 0.95002 0.89158 0.94961 1.22067 1.38380 1.10278 0.90342 0.91951 1.25693 0.96955 1.03423 0.92072 1.70800 1.37459 1.16988 1.30208 0.83832 0.76069 0.75944 0.75427 1.21371 1.20830 1.21733 1.60471 1.57008 1.08063 1.02151 1.22775 0.93621 0.96697 0.90129 0.90942 1.23710 0.98047 0.99530 1.00170 1.23009 0.96493 0.98279 0.98832 1.21968 0.94770 0.95974 0.96050 1.21430 0.96781 0.99811 0.99186 1.21545 1.00424 0.97414 0.98796 0.95558 0.93601 0.93142 0.92346 0.85212 0.90759 0.91804 0.90330 0.92427 0.92512 0.94653 0.91937 0.93001 0.92826 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.91 8.77 37.16 0.33 -3.58 16 2 C 0.18 4.35 2.14 -68.86 -0.15 4.21 16 3 H 0.03 0.81 5.97 -51.93 -0.31 0.50 16 4 C -0.57 -16.29 9.20 -34.44 -0.32 -16.61 16 5 H 0.06 1.94 8.04 -52.49 -0.42 1.52 16 6 C 0.02 0.64 5.43 -17.82 -0.10 0.55 16 7 N -0.92 -28.80 13.70 55.43 0.76 -28.04 16 8 Si 1.06 26.00 25.29 -169.99 -4.30 21.70 16 9 H -0.29 -6.71 6.81 56.52 0.38 -6.33 16 10 H -0.28 -6.49 6.36 56.52 0.36 -6.13 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 N -0.65 -13.34 5.19 -100.10 -0.52 -13.86 16 13 C 0.08 1.37 3.47 -66.91 -0.23 1.14 16 14 H 0.07 1.32 7.45 -51.93 -0.39 0.94 16 15 C -0.18 -2.54 7.01 -25.78 -0.18 -2.72 16 16 C -0.13 -1.75 6.96 -25.78 -0.18 -1.93 16 17 C -0.09 -1.28 1.37 -153.70 -0.21 -1.49 16 18 C -0.11 -1.79 8.61 37.15 0.32 -1.47 16 19 C -0.12 -1.56 9.07 37.16 0.34 -1.22 16 20 H 0.03 0.49 7.24 -51.93 -0.38 0.11 16 21 H 0.05 1.02 4.40 -51.93 -0.23 0.79 16 22 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 23 H 0.27 8.34 8.72 -40.82 -0.36 7.98 16 24 H 0.33 6.52 7.84 -39.29 -0.31 6.21 16 25 H 0.07 0.97 7.66 -51.93 -0.40 0.58 16 26 H 0.06 0.95 7.62 -51.93 -0.40 0.56 16 27 H 0.08 1.09 7.86 -51.93 -0.41 0.69 16 28 H 0.06 0.70 8.10 -51.93 -0.42 0.27 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 1.04 7.57 -51.93 -0.39 0.65 16 32 H 0.05 0.60 7.35 -51.93 -0.38 0.22 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 LS Contribution 263.02 15.07 3.96 3.96 Total: -1.00 -29.59 263.02 -6.23 -35.82 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.75 Total: 3.54 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: -0.38 Total: -23.12 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.24 Total: -41.90 kcal Atomic # 14 Polarization: 26.00 SS G_CDS: -4.30 Total: 21.70 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.59 -6.23 -35.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307056217.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.184 kcal (2) G-P(sol) polarization free energy of solvation -29.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds