Wall clock time and date at job start Mon Mar 30 2020 01:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47584 * 2 1 4 4 C 1.50707 * 109.47148 * 239.99699 * 2 1 3 5 5 H 1.07993 * 120.00192 * 245.37246 * 4 2 1 6 6 C 1.37875 * 119.99732 * 65.37303 * 4 2 1 7 7 N 1.31514 * 120.00255 * 185.16552 * 6 4 2 8 8 Si 1.86804 * 119.99866 * 5.17181 * 6 4 2 9 9 H 1.48503 * 109.46666 * 269.99366 * 8 6 4 10 10 H 1.48498 * 109.47514 * 29.99505 * 8 6 4 11 11 H 1.48501 * 109.47386 * 150.00034 * 8 6 4 12 12 N 1.46909 * 109.47474 * 119.99997 * 2 1 3 13 13 C 1.46888 * 110.99654 * 275.00072 * 12 2 1 14 14 H 1.08995 * 112.85557 * 334.65927 * 13 12 2 15 15 C 1.53779 * 113.61673 * 105.86335 * 13 12 2 16 16 C 1.54050 * 86.98831 * 89.15717 * 15 13 12 17 17 C 1.53782 * 87.07621 * 25.43193 * 16 15 13 18 18 C 1.52992 * 113.61658 * 220.02092 * 17 16 15 19 19 C 1.52999 * 113.68659 * 89.13263 * 17 16 15 20 20 H 1.08999 * 109.46930 * 294.99359 * 1 2 3 21 21 H 1.08995 * 109.46839 * 54.99780 * 1 2 3 22 22 H 1.09001 * 109.47403 * 175.00017 * 1 2 3 23 23 H 0.97000 * 120.00000 * 354.99915 * 7 6 4 24 24 H 1.00908 * 110.99403 * 38.95249 * 12 2 1 25 25 H 1.09003 * 113.61788 * 203.65906 * 15 13 12 26 26 H 1.09001 * 113.61176 * 334.56200 * 15 13 12 27 27 H 1.09000 * 113.61114 * 270.88375 * 16 15 13 28 28 H 1.09003 * 113.69699 * 139.99538 * 16 15 13 29 29 H 1.09000 * 109.47446 * 157.49442 * 18 17 16 30 30 H 1.09006 * 109.47455 * 277.50157 * 18 17 16 31 31 H 1.09006 * 109.47114 * 37.49655 * 18 17 16 32 32 H 1.09000 * 109.47391 * 322.46075 * 19 17 16 33 33 H 1.08996 * 109.47683 * 82.46412 * 19 17 16 34 34 H 1.09007 * 109.46887 * 202.46407 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5798 -1.6364 -1.1337 6 6 1.7930 -0.1784 -2.4797 7 7 2.1412 -0.8473 -3.5571 8 14 0.9742 1.4928 -2.6418 9 1 -0.4990 1.3179 -2.7073 10 1 1.3215 2.3304 -1.4658 11 1 1.4491 2.1586 -3.8814 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2226 2.3468 14 1 2.1951 1.2655 2.0508 15 6 0.9671 -0.0076 3.3801 16 6 1.9166 -1.0116 4.0609 17 6 3.0762 -0.2199 3.4339 18 6 4.2078 -1.1043 2.9066 19 6 3.5794 0.9299 4.3089 20 1 -0.3633 0.4342 0.9314 21 1 -0.3633 0.5895 -0.8418 22 1 -0.3634 -1.0237 -0.0896 23 1 2.6310 -1.6804 -3.4736 24 1 1.4495 -1.4980 1.4101 25 1 0.7489 0.8693 3.9898 26 1 0.0716 -0.4665 2.9610 27 1 1.8245 -2.0281 3.6782 28 1 1.8950 -0.9659 5.1498 29 1 4.7735 -0.5588 2.1513 30 1 4.8690 -1.3773 3.7291 31 1 3.7870 -2.0071 2.4637 32 1 2.7347 1.4001 4.8123 33 1 4.2759 0.5427 5.0526 34 1 4.0863 1.6663 3.6851 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307056217.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:38 Heat of formation + Delta-G solvation = -12.350329 kcal Electronic energy + Delta-G solvation = -13196.617493 eV Core-core repulsion = 11128.732547 eV Total energy + Delta-G solvation = -2067.884946 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.87696 -36.90681 -34.16164 -31.47641 -30.06000 -28.07279 -26.77394 -25.18712 -23.18423 -21.93298 -19.84661 -18.67791 -16.66178 -16.16073 -15.86020 -15.29750 -14.99025 -14.84462 -14.25860 -13.97261 -13.85505 -13.40610 -13.23330 -13.04263 -12.82512 -12.43304 -12.24932 -12.01827 -11.80859 -11.65758 -11.44430 -11.06918 -10.82987 -10.77598 -10.51103 -9.02486 -8.64344 -6.33269 1.40455 1.51567 1.67736 2.47501 3.11742 3.36089 3.67298 3.86343 3.97120 4.18569 4.45123 4.48307 4.56914 4.70966 4.73494 4.76512 4.87452 4.90263 4.94366 5.00350 5.06418 5.10952 5.23688 5.26361 5.39524 5.42458 5.61188 5.67955 5.89827 6.07599 6.45391 6.76132 6.80662 7.46659 8.69287 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.048638 B = 0.010063 C = 0.009540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.547406 B = 2781.874518 C = 2934.338123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.186 3.814 3 H 0.026 0.974 4 C -0.573 4.573 5 H 0.018 0.982 6 C -0.032 4.032 7 N -0.951 5.951 8 Si 1.096 2.904 9 H -0.263 1.263 10 H -0.255 1.255 11 H -0.293 1.293 12 N -0.662 5.662 13 C 0.062 3.938 14 H 0.061 0.939 15 C -0.162 4.162 16 C -0.120 4.120 17 C -0.085 4.085 18 C -0.113 4.113 19 C -0.121 4.121 20 H 0.059 0.941 21 H 0.041 0.959 22 H 0.044 0.956 23 H 0.249 0.751 24 H 0.332 0.668 25 H 0.096 0.904 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.031 0.969 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.995 4.383 16.846 17.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.077 3.923 3 H 0.044 0.956 4 C -0.612 4.612 5 H 0.037 0.963 6 C -0.228 4.228 7 N -0.589 5.589 8 Si 0.919 3.081 9 H -0.189 1.189 10 H -0.180 1.180 11 H -0.220 1.220 12 N -0.290 5.290 13 C -0.049 4.049 14 H 0.079 0.921 15 C -0.201 4.201 16 C -0.157 4.157 17 C -0.086 4.086 18 C -0.170 4.170 19 C -0.178 4.178 20 H 0.078 0.922 21 H 0.060 0.940 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.150 0.850 25 H 0.115 0.885 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.901 5.526 15.577 16.637 hybrid contribution -0.031 -1.605 0.592 1.711 sum -1.933 3.921 16.168 16.749 Atomic orbital electron populations 1.22678 0.99266 1.00894 1.00263 1.19537 0.90257 0.93926 0.88613 0.95568 1.22312 1.37182 1.08798 0.92898 0.96336 1.27187 0.97268 1.06528 0.91841 1.70935 1.39505 1.17061 1.31429 0.83364 0.76540 0.71906 0.76287 1.18887 1.17995 1.22000 1.60298 1.57221 1.08794 1.02714 1.22916 0.96819 0.95299 0.89908 0.92067 1.23635 0.96950 1.00520 0.99044 1.22945 0.95048 0.97498 1.00213 1.22040 0.94301 0.96787 0.95461 1.21393 0.97386 0.98943 0.99296 1.21536 1.01336 0.96326 0.98607 0.92217 0.93972 0.93650 0.94187 0.84953 0.88514 0.92117 0.91126 0.89935 0.94945 0.92312 0.93814 0.91397 0.91162 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.09 8.77 71.98 0.63 -6.46 16 2 C 0.19 8.78 2.14 44.17 0.09 8.88 16 3 H 0.03 1.28 5.97 -2.39 -0.01 1.27 16 4 C -0.57 -33.53 9.20 25.60 0.24 -33.29 16 5 H 0.02 1.20 8.04 -2.91 -0.02 1.18 16 6 C -0.03 -1.93 5.43 84.65 0.46 -1.47 16 7 N -0.95 -61.61 13.70 21.45 0.29 -61.31 16 8 Si 1.10 51.62 25.29 68.60 1.73 53.35 16 9 H -0.26 -11.39 6.81 99.48 0.68 -10.71 16 10 H -0.26 -10.84 6.36 99.48 0.63 -10.20 16 11 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 12 N -0.66 -26.99 5.19 -470.61 -2.44 -29.43 16 13 C 0.06 2.01 3.47 45.44 0.16 2.17 16 14 H 0.06 2.12 7.45 -2.39 -0.02 2.10 16 15 C -0.16 -4.12 7.01 31.21 0.22 -3.91 16 16 C -0.12 -2.86 6.96 31.21 0.22 -2.64 16 17 C -0.08 -2.31 1.37 -51.66 -0.07 -2.38 16 18 C -0.11 -3.43 8.61 71.98 0.62 -2.81 16 19 C -0.12 -2.61 9.07 71.98 0.65 -1.96 16 20 H 0.06 2.05 7.24 -2.39 -0.02 2.03 16 21 H 0.04 1.76 4.40 -2.39 -0.01 1.75 16 22 H 0.04 1.88 8.14 -2.39 -0.02 1.87 16 23 H 0.25 16.45 8.72 -92.71 -0.81 15.64 16 24 H 0.33 13.04 7.84 -89.69 -0.70 12.33 16 25 H 0.10 2.07 7.66 -2.39 -0.02 2.05 16 26 H 0.06 1.60 7.62 -2.39 -0.02 1.58 16 27 H 0.07 1.81 7.86 -2.39 -0.02 1.79 16 28 H 0.08 1.60 8.10 -2.39 -0.02 1.58 16 29 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.04 1.46 7.57 -2.38 -0.02 1.44 16 32 H 0.07 1.26 7.35 -2.39 -0.02 1.24 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -65.52 263.02 3.02 -62.50 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.21 Total: 18.75 kcal Atomic # 6 Polarization: -47.08 SS G_CDS: 3.22 Total: -43.86 kcal Atomic # 7 Polarization: -88.59 SS G_CDS: -2.15 Total: -90.74 kcal Atomic # 14 Polarization: 51.62 SS G_CDS: 1.73 Total: 53.35 kcal Total: -65.52 3.02 -62.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307056217.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.148 kcal (2) G-P(sol) polarization free energy of solvation -65.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds