Wall clock time and date at job start Mon Mar 30 2020 01:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.46873 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46897 * 111.00172 * 84.99810 * 12 2 1 14 14 H 1.09004 * 112.84934 * 334.66707 * 13 12 2 15 15 C 1.53774 * 113.61625 * 105.86685 * 13 12 2 16 16 C 1.53779 * 87.08434 * 139.97975 * 15 13 12 17 17 C 1.53784 * 113.61416 * 203.47263 * 13 12 2 18 18 C 1.53002 * 113.61543 * 334.57005 * 17 13 12 19 19 C 1.53008 * 113.61224 * 105.46896 * 17 13 12 20 20 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 23 23 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 24 24 H 1.00899 * 110.99467 * 321.04346 * 12 2 1 25 25 H 1.09003 * 113.61229 * 254.52975 * 15 13 12 26 26 H 1.08997 * 113.61378 * 25.34760 * 15 13 12 27 27 H 1.09001 * 113.61731 * 89.11167 * 16 15 13 28 28 H 1.09000 * 113.61487 * 219.93465 * 16 15 13 29 29 H 1.09000 * 109.47008 * 59.99274 * 18 17 13 30 30 H 1.08992 * 109.46894 * 179.97438 * 18 17 13 31 31 H 1.08997 * 109.46660 * 300.00164 * 18 17 13 32 32 H 1.08996 * 109.47312 * 59.99981 * 19 17 13 33 33 H 1.09003 * 109.46502 * 180.02562 * 19 17 13 34 34 H 1.09003 * 109.46744 * 299.99965 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8271 -0.4200 5.2204 11 1 1.8261 -2.5204 4.0076 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 1 1.3876 1.0581 -2.2606 15 6 3.5129 0.6472 -2.7188 16 6 3.0867 0.5113 -4.1900 17 6 2.0220 -0.4907 -3.7079 18 6 2.5174 -1.9376 -3.6640 19 6 0.6744 -0.3438 -4.4175 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 0.7096 1.1617 3.4844 24 1 1.4496 -1.4978 -1.4101 25 1 3.7549 1.6692 -2.4269 26 1 4.2744 -0.0712 -2.4153 27 1 2.6660 1.4254 -4.6090 28 1 3.8514 0.0667 -4.8269 29 1 1.9040 -2.5107 -2.9687 30 1 2.4450 -2.3767 -4.6589 31 1 3.5556 -1.9562 -3.3328 32 1 0.4700 0.7121 -4.5944 33 1 0.7059 -0.8728 -5.3700 34 1 -0.1128 -0.7667 -3.7933 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307056219.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:45 Heat of formation + Delta-G solvation = 5.647883 kcal Electronic energy + Delta-G solvation = -13110.066125 eV Core-core repulsion = 11042.961640 eV Total energy + Delta-G solvation = -2067.104485 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.38472 -34.88926 -31.87257 -30.24886 -27.92338 -27.08994 -25.08862 -23.29664 -21.92007 -19.99036 -17.83150 -16.16940 -15.22475 -14.80604 -14.43254 -13.98001 -13.10590 -12.88380 -12.59212 -12.31524 -11.87629 -11.80133 -11.57015 -11.16179 -10.93305 -10.92451 -10.72184 -10.67393 -10.22674 -10.07703 -10.01561 -9.68944 -9.35498 -8.85242 -8.30582 -7.13823 -5.93086 -3.95932 3.37326 3.40982 3.44552 4.48283 4.82707 4.99774 5.05819 5.38308 5.43781 5.58575 5.66486 5.82979 5.89738 6.02580 6.04544 6.13261 6.19166 6.25869 6.38258 6.49813 6.58689 6.74772 6.87018 6.90923 6.93611 7.18825 7.48578 7.79931 7.96532 8.36966 8.64531 8.72361 9.11387 9.69136 11.14000 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.054572 B = 0.008846 C = 0.008566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.962703 B = 3164.616990 C = 3267.887606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.210 3.790 3 H 0.032 0.968 4 C -0.493 4.493 5 H 0.061 0.939 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.279 1.279 12 N -0.670 5.670 13 C 0.075 3.925 14 H 0.060 0.940 15 C -0.126 4.126 16 C -0.134 4.134 17 C -0.096 4.096 18 C -0.116 4.116 19 C -0.135 4.135 20 H 0.087 0.913 21 H 0.026 0.974 22 H 0.003 0.997 23 H 0.259 0.741 24 H 0.325 0.675 25 H 0.056 0.944 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.109 -1.732 -11.381 11.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.102 3.898 3 H 0.050 0.950 4 C -0.531 4.531 5 H 0.079 0.921 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.300 5.300 13 C -0.037 4.037 14 H 0.078 0.922 15 C -0.164 4.164 16 C -0.172 4.172 17 C -0.096 4.096 18 C -0.173 4.173 19 C -0.192 4.192 20 H 0.106 0.894 21 H 0.045 0.955 22 H 0.022 0.978 23 H 0.069 0.931 24 H 0.143 0.857 25 H 0.075 0.925 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.690 -1.539 -11.051 11.285 hybrid contribution -0.763 -0.206 0.723 1.072 sum 0.926 -1.745 -10.328 10.515 Atomic orbital electron populations 1.22436 1.00914 0.99014 1.00328 1.19200 0.89396 0.94389 0.86822 0.95018 1.21133 1.30016 1.12307 0.89692 0.92092 1.24955 0.95422 0.95238 0.98998 1.69877 1.37447 1.23235 1.23310 0.86587 0.79161 0.79592 0.82164 1.20346 1.21511 1.20433 1.60965 1.57368 1.08652 1.03028 1.22960 0.96098 0.95324 0.89280 0.92249 1.22964 0.98354 1.00936 0.94165 1.22959 0.98394 0.98663 0.97200 1.22147 0.94870 0.95680 0.96927 1.21407 1.01770 0.93884 1.00288 1.21739 0.96732 1.01125 0.99626 0.89405 0.95505 0.97763 0.93110 0.85676 0.92547 0.89653 0.90937 0.91965 0.92126 0.93629 0.92009 0.92963 0.93132 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 8.93 37.16 0.33 -3.79 16 2 C 0.21 5.38 2.43 -68.86 -0.17 5.21 16 3 H 0.03 0.90 7.85 -51.93 -0.41 0.50 16 4 C -0.49 -13.87 8.84 -34.44 -0.30 -14.17 16 5 H 0.06 1.73 7.81 -52.49 -0.41 1.31 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -26.16 11.32 55.43 0.63 -25.54 16 8 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 N -0.67 -14.38 5.77 -100.10 -0.58 -14.96 16 13 C 0.07 1.37 3.27 -66.90 -0.22 1.15 16 14 H 0.06 1.17 7.44 -51.93 -0.39 0.79 16 15 C -0.13 -2.10 7.53 -25.92 -0.20 -2.30 16 16 C -0.13 -1.86 7.20 -25.83 -0.19 -2.04 16 17 C -0.10 -1.41 1.28 -153.60 -0.20 -1.61 16 18 C -0.12 -1.63 8.47 37.16 0.31 -1.32 16 19 C -0.13 -1.80 9.20 37.16 0.34 -1.45 16 20 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 21 H 0.03 0.63 8.13 -51.93 -0.42 0.20 16 22 H 0.00 0.08 7.71 -51.93 -0.40 -0.32 16 23 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 24 H 0.32 6.69 6.75 -39.29 -0.27 6.42 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.08 1.48 7.67 -51.93 -0.40 1.09 16 27 H 0.07 0.93 7.96 -51.93 -0.41 0.52 16 28 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 29 H 0.06 0.89 6.75 -51.93 -0.35 0.54 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.90 7.35 -51.93 -0.38 0.52 16 32 H 0.05 0.67 7.95 -51.93 -0.41 0.26 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 268.82 15.07 4.05 4.05 Total: -1.00 -28.34 268.82 -7.10 -35.45 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -5.81 Total: 3.07 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -0.38 Total: -18.89 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.05 Total: -40.50 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.34 -7.10 -35.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307056219.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.095 kcal (2) G-P(sol) polarization free energy of solvation -28.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds