Wall clock time and date at job start Mon Mar 30 2020 01:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48501 * 109.47152 * 239.99726 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46895 * 111.00561 * 275.00137 * 12 2 1 14 14 H 1.09001 * 112.84519 * 23.80329 * 13 12 2 15 15 C 1.53776 * 113.61799 * 252.49698 * 13 12 2 16 16 C 1.53780 * 87.08454 * 220.01646 * 15 13 12 17 17 C 1.53777 * 87.07935 * 25.43075 * 16 15 13 18 18 C 1.52993 * 113.61670 * 220.02071 * 17 16 15 19 19 C 1.53008 * 113.69201 * 89.12424 * 17 16 15 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 23 23 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 24 24 H 1.00902 * 110.99927 * 151.04624 * 12 2 1 25 25 H 1.09005 * 113.61771 * 334.57092 * 15 13 12 26 26 H 1.09008 * 113.61397 * 105.46625 * 15 13 12 27 27 H 1.08999 * 113.60879 * 270.88361 * 16 15 13 28 28 H 1.08995 * 113.61107 * 139.97623 * 16 15 13 29 29 H 1.09003 * 109.47684 * 157.50216 * 18 17 16 30 30 H 1.09005 * 109.46883 * 277.49513 * 18 17 16 31 31 H 1.08997 * 109.47253 * 37.49413 * 18 17 16 32 32 H 1.09000 * 109.47060 * 322.46727 * 19 17 16 33 33 H 1.09002 * 109.46719 * 82.46366 * 19 17 16 34 34 H 1.08993 * 109.47253 * 202.46173 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1874 -4.8164 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2226 2.3469 14 1 1.4067 1.0722 2.2482 15 6 3.5152 0.6156 2.7438 16 6 3.0599 0.4914 4.2074 17 6 1.9844 -0.4875 3.7074 18 6 0.6287 -0.3118 4.3942 19 6 2.4483 -1.9452 3.6726 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 0.7089 1.1612 -3.4844 24 1 2.9173 -1.1204 1.0288 25 1 4.2656 -0.1207 2.4559 26 1 3.7851 1.6316 2.4553 27 1 2.6524 1.4153 4.6178 28 1 3.8024 0.0292 4.8579 29 1 -0.1568 -0.7189 3.7575 30 1 0.6334 -0.8397 5.3479 31 1 0.4435 0.7484 4.5668 32 1 3.4911 -1.9872 3.3581 33 1 2.3508 -2.3813 4.6668 34 1 1.8335 -2.5054 2.9682 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307056220.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:47 Heat of formation + Delta-G solvation = 3.769049 kcal Electronic energy + Delta-G solvation = -13108.119301 eV Core-core repulsion = 11040.933344 eV Total energy + Delta-G solvation = -2067.185957 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.37754 -34.82240 -31.90546 -30.12795 -27.96173 -26.96940 -25.19952 -23.30597 -22.00681 -19.72079 -17.96483 -16.23167 -15.06953 -14.58951 -14.43918 -13.88369 -13.49349 -12.84690 -12.48934 -12.35940 -11.82069 -11.63833 -11.42494 -11.21932 -11.09918 -10.91475 -10.65496 -10.47406 -10.23399 -10.08899 -10.05741 -9.67812 -9.35900 -8.74655 -8.44075 -7.11716 -5.99926 -4.05986 3.29703 3.37541 3.41758 4.42276 4.93958 5.02066 5.12530 5.27689 5.31634 5.62107 5.79393 5.88709 6.01355 6.05239 6.07233 6.16730 6.25531 6.31478 6.34866 6.52515 6.65874 6.84789 6.92683 6.95440 7.20272 7.30480 7.59077 7.82170 7.95462 8.31827 8.48638 8.74591 9.06586 9.59960 11.06359 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.054685 B = 0.008855 C = 0.008558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.903683 B = 3161.222768 C = 3271.143073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.211 3.789 3 H 0.000 1.000 4 C -0.516 4.516 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.674 5.674 13 C 0.084 3.916 14 H 0.086 0.914 15 C -0.170 4.170 16 C -0.135 4.135 17 C -0.082 4.082 18 C -0.130 4.130 19 C -0.115 4.115 20 H 0.030 0.970 21 H 0.079 0.921 22 H 0.003 0.997 23 H 0.260 0.740 24 H 0.332 0.668 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.041 0.959 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.374 -1.257 10.625 10.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.103 3.897 3 H 0.017 0.983 4 C -0.554 4.554 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.529 5.529 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.303 5.303 13 C -0.028 4.028 14 H 0.104 0.896 15 C -0.209 4.209 16 C -0.172 4.172 17 C -0.083 4.083 18 C -0.188 4.188 19 C -0.173 4.173 20 H 0.049 0.951 21 H 0.097 0.903 22 H 0.022 0.978 23 H 0.069 0.931 24 H 0.150 0.850 25 H 0.096 0.904 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.655 -1.401 10.613 10.832 hybrid contribution 1.067 0.220 -1.117 1.561 sum 2.723 -1.181 9.496 9.949 Atomic orbital electron populations 1.21711 0.98028 0.99214 0.99191 1.19105 0.92473 0.92322 0.85789 0.98279 1.21315 1.31187 1.12375 0.90547 0.92279 1.24923 0.95110 0.95018 0.99025 1.69908 1.36780 1.22989 1.23249 0.86494 0.78592 0.79622 0.82991 1.19786 1.21017 1.21152 1.60567 1.31775 1.32256 1.05752 1.22998 0.94201 0.94495 0.91143 0.89623 1.23613 0.99334 1.01329 0.96621 1.22924 0.98689 0.99283 0.96347 1.22024 0.94363 0.95315 0.96562 1.21667 0.97023 1.00657 0.99405 1.21384 1.00907 0.94484 1.00497 0.95097 0.90266 0.97795 0.93055 0.85016 0.90407 0.92289 0.90824 0.92142 0.92253 0.93557 0.93315 0.93308 0.94025 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.12 9.18 37.16 0.34 -2.78 16 2 C 0.21 5.39 2.45 -68.87 -0.17 5.22 16 3 H 0.00 -0.01 7.84 -51.93 -0.41 -0.42 16 4 C -0.52 -14.26 8.59 -34.44 -0.30 -14.56 16 5 H 0.06 1.62 7.62 -52.49 -0.40 1.22 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.71 11.32 55.43 0.63 -25.08 16 8 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 N -0.67 -14.41 5.34 -100.11 -0.53 -14.95 16 13 C 0.08 1.53 3.33 -66.91 -0.22 1.30 16 14 H 0.09 1.69 7.45 -51.93 -0.39 1.30 16 15 C -0.17 -2.71 7.35 -25.92 -0.19 -2.90 16 16 C -0.13 -1.86 7.20 -25.92 -0.19 -2.05 16 17 C -0.08 -1.24 1.37 -153.70 -0.21 -1.45 16 18 C -0.13 -1.84 9.19 37.15 0.34 -1.50 16 19 C -0.12 -1.69 8.44 37.16 0.31 -1.38 16 20 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 22 H 0.00 0.07 7.74 -51.93 -0.40 -0.33 16 23 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 24 H 0.33 7.00 7.62 -39.29 -0.30 6.70 16 25 H 0.08 1.23 7.34 -51.93 -0.38 0.85 16 26 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 27 H 0.07 0.96 7.96 -51.93 -0.41 0.54 16 28 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.65 7.94 -51.93 -0.41 0.24 16 32 H 0.05 0.69 7.35 -51.93 -0.38 0.31 16 33 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 1.18 7.77 -51.93 -0.40 0.78 16 LS Contribution 269.72 15.07 4.06 4.06 Total: -1.00 -27.97 269.72 -7.11 -35.08 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -5.87 Total: 2.96 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -0.37 Total: -18.50 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.09 Total: -40.03 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.97 -7.11 -35.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307056220.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.845 kcal (2) G-P(sol) polarization free energy of solvation -27.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds