Wall clock time and date at job start Mon Mar 30 2020 01:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.46732 * 2 1 4 4 N 1.46896 * 109.47024 * 239.99812 * 2 1 3 5 5 C 1.52998 * 109.47023 * 119.99826 * 2 1 3 6 6 C 1.52995 * 109.47142 * 184.99975 * 5 2 1 7 7 H 1.08998 * 115.56070 * 330.70656 * 6 5 2 8 8 C 1.52997 * 117.50112 * 116.39168 * 6 5 2 9 9 H 1.09005 * 117.51992 * 0.02562 * 8 6 5 10 10 C 1.50697 * 117.50164 * 214.98153 * 8 6 5 11 11 H 1.08001 * 119.99877 * 288.41086 * 10 8 6 12 12 C 1.37879 * 119.99977 * 108.13851 * 10 8 6 13 13 N 1.31518 * 119.99916 * 180.02562 * 12 10 8 14 14 Si 1.86799 * 120.00192 * 359.97438 * 12 10 8 15 15 H 1.48503 * 109.46958 * 90.00276 * 14 12 10 16 16 H 1.48497 * 109.46984 * 210.00325 * 14 12 10 17 17 H 1.48499 * 109.46789 * 330.00494 * 14 12 10 18 18 C 1.52997 * 60.00094 * 107.49056 * 8 6 5 19 19 C 1.53004 * 117.49779 * 107.48997 * 18 8 6 20 20 C 1.53002 * 117.49998 * 252.51517 * 18 8 6 21 21 H 1.08995 * 109.46829 * 300.00315 * 1 2 3 22 22 H 1.08997 * 109.46598 * 59.99862 * 1 2 3 23 23 H 1.08992 * 109.46922 * 179.97438 * 1 2 3 24 24 H 1.00902 * 111.00082 * 176.04150 * 4 2 1 25 25 H 1.00899 * 111.00361 * 300.00574 * 4 2 1 26 26 H 1.09003 * 109.47102 * 65.00105 * 5 2 1 27 27 H 1.09002 * 109.46942 * 305.00181 * 5 2 1 28 28 H 0.96992 * 120.00173 * 180.02562 * 13 12 10 29 29 H 1.09002 * 109.46935 * 64.68470 * 19 18 8 30 30 H 1.09003 * 109.46948 * 184.68302 * 19 18 8 31 31 H 1.08993 * 109.47142 * 304.68090 * 19 18 8 32 32 H 1.08997 * 109.47091 * 8.60297 * 20 18 8 33 33 H 1.08995 * 109.47412 * 128.60919 * 20 18 8 34 34 H 1.09008 * 109.46689 * 248.60841 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0401 -0.7212 1.2493 6 6 3.5648 -0.6133 1.3137 7 1 4.0720 -0.5380 0.3519 8 6 4.1697 0.1511 2.4930 9 1 3.4817 0.5768 3.2234 10 6 5.4212 0.9503 2.2359 11 1 6.3599 0.4439 2.0661 12 6 5.3667 2.3278 2.2118 13 7 6.4588 3.0252 1.9869 14 14 3.7415 3.2034 2.4972 15 1 3.5709 3.4698 3.9481 16 1 3.7346 4.4888 1.7537 17 1 2.6272 2.3475 2.0167 18 6 4.2803 -1.3737 2.4321 19 6 5.6529 -1.9704 2.1148 20 6 3.4160 -2.1839 3.4004 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 3.0263 -0.6501 -1.2559 25 1 1.6961 -1.6479 -1.2228 26 1 1.7517 -1.7715 1.2056 27 1 1.6054 -0.2617 2.1370 28 1 6.4206 3.9943 1.9703 29 1 6.3485 -1.7293 2.9186 30 1 5.5659 -3.0530 2.0221 31 1 6.0222 -1.5541 1.1776 32 1 2.7163 -1.5188 3.9065 33 1 2.8615 -2.9410 2.8461 34 1 4.0548 -2.6690 4.1386 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307473887.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:08 Heat of formation + Delta-G solvation = -5.894380 kcal Electronic energy + Delta-G solvation = -13100.068107 eV Core-core repulsion = 11032.463112 eV Total energy + Delta-G solvation = -2067.604995 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.33341 -35.59600 -32.35511 -29.27010 -28.73350 -27.69874 -26.36929 -24.28617 -20.55609 -19.30745 -17.78219 -16.82290 -15.63007 -14.59402 -14.33911 -13.83253 -13.64709 -13.16492 -12.61339 -12.29840 -12.19866 -11.78115 -11.71188 -11.64535 -11.32362 -11.08848 -10.94308 -10.75890 -10.63969 -10.12160 -9.79752 -9.37908 -8.92286 -8.51086 -8.31378 -8.16502 -6.11245 -4.06966 3.27970 3.37149 3.42363 4.41809 4.68990 4.90996 5.14363 5.42815 5.47945 5.65426 5.71637 5.76816 5.84772 5.99951 6.12529 6.18361 6.21239 6.26781 6.37189 6.41237 6.44785 6.59535 6.66373 6.81752 6.89615 6.96673 7.21205 7.31473 7.50031 7.75075 7.79142 8.53213 8.94327 9.52414 11.00504 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.024096 B = 0.015322 C = 0.011334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.721512 B = 1827.039955 C = 2469.897826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.085 3.915 3 H 0.081 0.919 4 N -0.844 5.844 5 C -0.112 4.112 6 C -0.181 4.181 7 H 0.091 0.909 8 C 0.005 3.995 9 H 0.059 0.941 10 C -0.487 4.487 11 H 0.079 0.921 12 C 0.074 3.926 13 N -0.897 5.897 14 Si 0.877 3.123 15 H -0.279 1.279 16 H -0.289 1.289 17 H -0.259 1.259 18 C -0.148 4.148 19 C -0.094 4.094 20 C -0.104 4.104 21 H 0.055 0.945 22 H 0.057 0.943 23 H 0.048 0.952 24 H 0.345 0.655 25 H 0.331 0.669 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.265 0.735 29 H 0.053 0.947 30 H 0.033 0.967 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.004 -7.587 -1.113 11.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.026 4.026 3 H 0.099 0.901 4 N -0.373 5.373 5 C -0.151 4.151 6 C -0.200 4.200 7 H 0.109 0.891 8 C -0.014 4.014 9 H 0.077 0.923 10 C -0.524 4.524 11 H 0.097 0.903 12 C -0.128 4.128 13 N -0.534 5.534 14 Si 0.705 3.295 15 H -0.205 1.205 16 H -0.215 1.215 17 H -0.183 1.183 18 C -0.148 4.148 19 C -0.151 4.151 20 C -0.162 4.162 21 H 0.074 0.926 22 H 0.076 0.924 23 H 0.067 0.933 24 H 0.159 0.841 25 H 0.142 0.858 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.337 -6.829 -1.549 11.671 hybrid contribution -0.271 -0.061 0.850 0.894 sum -9.608 -6.889 -0.699 11.844 Atomic orbital electron populations 1.21791 0.95437 1.01241 1.01490 1.21417 0.94302 0.98878 0.88016 0.90064 1.59063 1.16958 1.20400 1.40921 1.21859 0.95576 0.99028 0.98678 1.22786 0.92066 1.09821 0.95363 0.89097 1.20457 0.97489 0.89005 0.94442 0.92282 1.20607 0.93484 0.90529 1.47806 0.90293 1.25001 0.96197 0.97481 0.94166 1.69895 1.27735 1.06737 1.49074 0.86811 0.85208 0.79143 0.78382 1.20501 1.21498 1.18295 1.21465 0.96210 0.96316 1.00828 1.21079 0.95126 0.97309 1.01595 1.21214 0.98437 0.98722 0.97779 0.92638 0.92388 0.93268 0.84132 0.85782 0.93260 0.92540 0.92555 0.92807 0.94768 0.92580 0.93388 0.93835 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.49 37.16 0.35 -1.59 16 2 C 0.09 1.39 3.41 -67.71 -0.23 1.16 16 3 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 4 N -0.84 -12.61 9.20 -4.67 -0.04 -12.65 16 5 C -0.11 -1.91 4.22 -26.73 -0.11 -2.02 16 6 C -0.18 -3.61 4.94 -90.62 -0.45 -4.06 16 7 H 0.09 1.90 6.52 -51.93 -0.34 1.56 16 8 C 0.00 0.11 3.93 -91.78 -0.36 -0.25 16 9 H 0.06 1.40 6.47 -51.93 -0.34 1.06 16 10 C -0.49 -13.43 9.26 -34.44 -0.32 -13.75 16 11 H 0.08 2.34 6.84 -52.49 -0.36 1.98 16 12 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 13 N -0.90 -27.11 13.96 55.43 0.77 -26.33 16 14 Si 0.88 21.43 27.22 -169.99 -4.63 16.80 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.26 -6.03 6.97 56.52 0.39 -5.63 16 18 C -0.15 -2.92 2.70 -154.51 -0.42 -3.34 16 19 C -0.09 -1.80 8.40 37.16 0.31 -1.48 16 20 C -0.10 -1.74 8.85 37.16 0.33 -1.41 16 21 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.34 5.35 7.40 -39.29 -0.29 5.06 16 25 H 0.33 4.32 9.00 -39.29 -0.35 3.96 16 26 H 0.05 0.77 7.77 -51.93 -0.40 0.36 16 27 H 0.06 1.00 7.88 -51.93 -0.41 0.59 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.05 1.06 8.12 -51.93 -0.42 0.64 16 30 H 0.03 0.56 8.12 -51.93 -0.42 0.13 16 31 H 0.06 1.13 7.59 -51.93 -0.39 0.73 16 32 H 0.05 0.79 7.90 -51.93 -0.41 0.38 16 33 H 0.04 0.65 7.83 -51.93 -0.41 0.25 16 34 H 0.05 0.77 8.09 -51.92 -0.42 0.35 16 LS Contribution 272.62 15.07 4.11 4.11 Total: -1.00 -28.70 272.62 -6.58 -35.28 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -5.80 Total: 7.56 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -0.99 Total: -24.75 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.73 Total: -38.99 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.63 Total: 16.80 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.70 -6.58 -35.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307473887.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.383 kcal (2) G-P(sol) polarization free energy of solvation -28.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds