Wall clock time and date at job start Mon Mar 30 2020 02:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.46935 * 2 1 4 4 C 1.36933 * 119.99900 * 93.52649 * 3 2 1 5 5 H 1.08003 * 119.99885 * 213.98617 * 4 3 2 6 6 C 1.38812 * 120.00217 * 34.26074 * 4 3 2 7 7 N 1.31613 * 119.99952 * 22.05587 * 6 4 3 8 8 Si 1.86804 * 119.99867 * 202.05658 * 6 4 3 9 9 H 1.48496 * 109.47245 * 90.00282 * 8 6 4 10 10 H 1.48498 * 109.46827 * 210.00004 * 8 6 4 11 11 H 1.48496 * 109.47129 * 329.99824 * 8 6 4 12 12 C 1.46499 * 120.00057 * 273.51884 * 3 2 1 13 13 H 1.08994 * 110.01873 * 359.30188 * 12 3 2 14 14 C 1.53876 * 110.03415 * 237.91148 * 12 3 2 15 15 C 1.54379 * 106.54583 * 240.73166 * 14 12 3 16 16 C 1.54894 * 104.19257 * 336.34912 * 15 14 12 17 17 C 1.54265 * 110.03187 * 120.69160 * 12 3 2 18 18 H 1.09007 * 110.48740 * 24.22093 * 17 12 3 19 19 C 1.52994 * 110.49029 * 261.57498 * 17 12 3 20 20 H 1.08996 * 109.47192 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47358 * 300.00130 * 1 2 3 22 22 H 1.09000 * 109.47117 * 59.99822 * 1 2 3 23 23 H 1.09007 * 109.47274 * 240.00211 * 2 1 3 24 24 H 1.09000 * 109.47117 * 120.00178 * 2 1 3 25 25 H 0.97007 * 120.00283 * 180.02562 * 7 6 4 26 26 H 1.09003 * 110.03104 * 0.02562 * 14 12 3 27 27 H 1.09000 * 110.03523 * 121.43544 * 14 12 3 28 28 H 1.08998 * 110.46170 * 217.68709 * 15 14 12 29 29 H 1.08994 * 110.62027 * 95.09341 * 15 14 12 30 30 H 1.08995 * 110.75875 * 279.65012 * 16 15 14 31 31 H 1.09005 * 110.91186 * 156.35611 * 16 15 14 32 32 H 1.09007 * 109.47017 * 59.99649 * 19 17 12 33 33 H 1.09000 * 109.47294 * 179.97438 * 19 17 12 34 34 H 1.09000 * 109.46922 * 300.00186 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3152 2.0024 1.1836 5 1 2.1417 3.0625 1.2955 6 6 2.8446 1.2707 2.2378 7 7 3.4591 0.1305 2.0043 8 14 2.6848 1.9045 3.9878 9 1 1.4278 1.3898 4.5878 10 1 3.8437 1.4382 4.7908 11 1 2.6561 3.3891 3.9759 12 6 2.1890 2.0978 -1.2663 13 1 1.9190 1.4505 -2.1007 14 6 3.6469 2.5674 -1.4139 15 6 3.6052 4.1077 -1.5085 16 6 2.1760 4.4183 -2.0184 17 6 1.3127 3.3673 -1.2774 18 1 1.1032 3.6952 -0.2591 19 6 0.0099 3.1122 -2.0379 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.8288 -0.3810 2.7410 26 1 4.2275 2.2617 -0.5435 27 1 4.0841 2.1487 -2.3203 28 1 4.3500 4.4661 -2.2190 29 1 3.7667 4.5570 -0.5287 30 1 2.1121 4.2793 -3.0976 31 1 1.8755 5.4291 -1.7423 32 1 -0.5412 2.3056 -1.5542 33 1 -0.5959 4.0183 -2.0351 34 1 0.2384 2.8306 -3.0658 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307523941.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:11 Heat of formation + Delta-G solvation = -1.647965 kcal Electronic energy + Delta-G solvation = -13553.560916 eV Core-core repulsion = 11486.140060 eV Total energy + Delta-G solvation = -2067.420857 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.07077 -34.56461 -31.28745 -30.49115 -29.22350 -26.53694 -24.44394 -23.32445 -20.75315 -19.57512 -18.92395 -16.03374 -15.39471 -14.51990 -14.06749 -13.38413 -13.13134 -13.09193 -12.61622 -12.39586 -11.74865 -11.56717 -11.20416 -10.85338 -10.79726 -10.49813 -10.42102 -10.17708 -10.08386 -9.90113 -9.87422 -9.56955 -9.46840 -9.34270 -8.35437 -6.46724 -5.68857 -3.22024 3.40653 3.48374 3.49236 4.54938 5.31572 5.36663 5.42887 5.55544 5.74865 5.95813 6.09981 6.19266 6.25108 6.30377 6.37185 6.46221 6.52545 6.57446 6.65029 6.69624 6.74502 6.88956 6.93827 7.01029 7.10702 7.26363 7.37453 7.45136 7.84635 7.93234 8.61514 9.30637 9.95851 10.52066 11.30968 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.031907 B = 0.014407 C = 0.012313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.329251 B = 1943.032286 C = 2273.561451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.137 3.863 3 N -0.579 5.579 4 C -0.242 4.242 5 H 0.062 0.938 6 C 0.005 3.995 7 N -0.891 5.891 8 Si 0.893 3.107 9 H -0.288 1.288 10 H -0.293 1.293 11 H -0.279 1.279 12 C 0.177 3.823 13 H 0.047 0.953 14 C -0.134 4.134 15 C -0.117 4.117 16 C -0.118 4.118 17 C -0.111 4.111 18 H 0.082 0.918 19 C -0.137 4.137 20 H 0.031 0.969 21 H 0.047 0.953 22 H 0.034 0.966 23 H 0.017 0.983 24 H 0.098 0.902 25 H 0.252 0.748 26 H 0.083 0.917 27 H 0.039 0.961 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.040 0.960 34 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.207 4.114 -6.238 8.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.011 3.989 3 N -0.298 5.298 4 C -0.372 4.372 5 H 0.079 0.921 6 C -0.194 4.194 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.215 1.215 10 H -0.219 1.219 11 H -0.204 1.204 12 C 0.069 3.931 13 H 0.065 0.935 14 C -0.173 4.173 15 C -0.155 4.155 16 C -0.156 4.156 17 C -0.131 4.131 18 H 0.100 0.900 19 C -0.194 4.194 20 H 0.050 0.950 21 H 0.066 0.934 22 H 0.053 0.947 23 H 0.035 0.965 24 H 0.116 0.884 25 H 0.062 0.938 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.109 3.976 -6.120 7.933 hybrid contribution -0.085 0.281 0.950 0.995 sum -3.194 4.257 -5.170 7.420 Atomic orbital electron populations 1.22404 1.01172 0.98444 1.00381 1.20958 0.89661 0.86725 1.01556 1.43995 1.73946 1.11178 1.00722 1.18957 1.35037 0.93941 0.89231 0.92070 1.25059 0.97412 0.98033 0.98878 1.69991 1.36934 1.16212 1.30342 0.86436 0.77183 0.78564 0.85525 1.21538 1.21948 1.20418 1.21044 0.91640 0.91614 0.88830 0.93467 1.22620 0.99771 0.93871 1.01036 1.22257 0.95724 0.97520 1.00027 1.22498 0.96077 0.98142 0.98918 1.22443 0.94412 0.96889 0.99364 0.90009 1.21766 0.97798 1.00560 0.99277 0.95029 0.93404 0.94674 0.96473 0.88436 0.93774 0.89853 0.94207 0.93493 0.92041 0.92648 0.93032 0.92569 0.94113 0.93826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 10.24 37.16 0.38 -3.02 16 2 C 0.14 3.28 5.94 -4.04 -0.02 3.26 16 3 N -0.58 -14.19 2.40 -164.40 -0.39 -14.59 16 4 C -0.24 -6.46 7.92 -15.06 -0.12 -6.58 16 5 H 0.06 1.65 6.78 -52.48 -0.36 1.30 16 6 C 0.01 0.14 4.94 -17.43 -0.09 0.06 16 7 N -0.89 -25.60 11.32 55.49 0.63 -24.97 16 8 Si 0.89 21.71 29.61 -169.99 -5.03 16.68 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 12 C 0.18 3.73 2.99 -66.81 -0.20 3.53 16 13 H 0.05 0.98 7.57 -51.93 -0.39 0.58 16 14 C -0.13 -2.74 6.27 -25.55 -0.16 -2.90 16 15 C -0.12 -2.08 6.83 -25.01 -0.17 -2.25 16 16 C -0.12 -1.94 6.33 -24.74 -0.16 -2.10 16 17 C -0.11 -2.08 3.04 -88.96 -0.27 -2.35 16 18 H 0.08 1.74 6.44 -51.92 -0.33 1.40 16 19 C -0.14 -2.23 9.12 37.15 0.34 -1.90 16 20 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 21 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 22 H 0.03 0.67 6.33 -51.93 -0.33 0.34 16 23 H 0.02 0.39 8.00 -51.93 -0.42 -0.02 16 24 H 0.10 2.64 5.33 -51.93 -0.28 2.36 16 25 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.08 2.03 7.29 -51.93 -0.38 1.65 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.05 0.83 8.04 -51.93 -0.42 0.42 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.97 6.33 -51.93 -0.33 0.64 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.04 0.65 8.12 -51.93 -0.42 0.23 16 LS Contribution 263.81 15.07 3.98 3.98 Total: -1.00 -27.56 263.81 -7.04 -34.60 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -5.74 Total: -1.46 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -0.47 Total: -14.24 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.23 Total: -39.55 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -27.56 -7.04 -34.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307523941.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.950 kcal (2) G-P(sol) polarization free energy of solvation -27.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds