Wall clock time and date at job start Mon Mar 30 2020 02:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.46935 * 2 1 4 4 C 1.36933 * 119.99900 * 93.52649 * 3 2 1 5 5 H 1.08003 * 119.99885 * 213.98617 * 4 3 2 6 6 C 1.38812 * 120.00217 * 34.26074 * 4 3 2 7 7 N 1.31613 * 119.99952 * 22.05587 * 6 4 3 8 8 Si 1.86804 * 119.99867 * 202.05658 * 6 4 3 9 9 H 1.48496 * 109.47245 * 90.00282 * 8 6 4 10 10 H 1.48498 * 109.46827 * 210.00004 * 8 6 4 11 11 H 1.48496 * 109.47129 * 329.99824 * 8 6 4 12 12 C 1.46499 * 120.00057 * 273.51884 * 3 2 1 13 13 H 1.08994 * 110.01873 * 359.30188 * 12 3 2 14 14 C 1.53876 * 110.03415 * 237.91148 * 12 3 2 15 15 C 1.54379 * 106.54583 * 240.73166 * 14 12 3 16 16 C 1.54894 * 104.19257 * 336.34912 * 15 14 12 17 17 C 1.54265 * 110.03187 * 120.69160 * 12 3 2 18 18 H 1.09007 * 110.48740 * 24.22093 * 17 12 3 19 19 C 1.52994 * 110.49029 * 261.57498 * 17 12 3 20 20 H 1.08996 * 109.47192 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47358 * 300.00130 * 1 2 3 22 22 H 1.09000 * 109.47117 * 59.99822 * 1 2 3 23 23 H 1.09007 * 109.47274 * 240.00211 * 2 1 3 24 24 H 1.09000 * 109.47117 * 120.00178 * 2 1 3 25 25 H 0.97007 * 120.00283 * 180.02562 * 7 6 4 26 26 H 1.09003 * 110.03104 * 0.02562 * 14 12 3 27 27 H 1.09000 * 110.03523 * 121.43544 * 14 12 3 28 28 H 1.08998 * 110.46170 * 217.68709 * 15 14 12 29 29 H 1.08994 * 110.62027 * 95.09341 * 15 14 12 30 30 H 1.08995 * 110.75875 * 279.65012 * 16 15 14 31 31 H 1.09005 * 110.91186 * 156.35611 * 16 15 14 32 32 H 1.09007 * 109.47017 * 59.99649 * 19 17 12 33 33 H 1.09000 * 109.47294 * 179.97438 * 19 17 12 34 34 H 1.09000 * 109.46922 * 300.00186 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3152 2.0024 1.1836 5 1 2.1417 3.0625 1.2955 6 6 2.8446 1.2707 2.2378 7 7 3.4591 0.1305 2.0043 8 14 2.6848 1.9045 3.9878 9 1 1.4278 1.3898 4.5878 10 1 3.8437 1.4382 4.7908 11 1 2.6561 3.3891 3.9759 12 6 2.1890 2.0978 -1.2663 13 1 1.9190 1.4505 -2.1007 14 6 3.6469 2.5674 -1.4139 15 6 3.6052 4.1077 -1.5085 16 6 2.1760 4.4183 -2.0184 17 6 1.3127 3.3673 -1.2774 18 1 1.1032 3.6952 -0.2591 19 6 0.0099 3.1122 -2.0379 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.8288 -0.3810 2.7410 26 1 4.2275 2.2617 -0.5435 27 1 4.0841 2.1487 -2.3203 28 1 4.3500 4.4661 -2.2190 29 1 3.7667 4.5570 -0.5287 30 1 2.1121 4.2793 -3.0976 31 1 1.8755 5.4291 -1.7423 32 1 -0.5412 2.3056 -1.5542 33 1 -0.5959 4.0183 -2.0351 34 1 0.2384 2.8306 -3.0658 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307523941.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:11 Heat of formation + Delta-G solvation = -15.959881 kcal Electronic energy + Delta-G solvation = -13554.181528 eV Core-core repulsion = 11486.140060 eV Total energy + Delta-G solvation = -2068.041468 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.69033 -36.37624 -33.27760 -31.95480 -30.96195 -28.26700 -26.15460 -24.98913 -22.58101 -21.04887 -20.65292 -17.97959 -17.16462 -16.36618 -15.79206 -15.07357 -14.81020 -14.56846 -14.19034 -14.08148 -13.46087 -13.23969 -12.87466 -12.74757 -12.51770 -12.29887 -12.00143 -11.92073 -11.70763 -11.51367 -11.33089 -11.32101 -11.20644 -11.04997 -10.39744 -8.47043 -7.74522 -5.30997 1.44856 1.47642 1.54678 2.54324 3.29190 3.67196 3.95155 4.04738 4.24796 4.54594 4.59511 4.69650 4.75550 4.81510 4.90292 4.92854 4.96703 5.01176 5.13041 5.15109 5.24637 5.27424 5.37625 5.50800 5.56181 5.63920 5.65962 5.75541 5.80205 5.95034 6.54762 7.25744 8.00182 8.49429 9.21485 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.031907 B = 0.014407 C = 0.012313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.329251 B = 1943.032286 C = 2273.561451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.134 3.866 3 N -0.592 5.592 4 C -0.235 4.235 5 H 0.055 0.945 6 C -0.045 4.045 7 N -0.922 5.922 8 Si 0.948 3.052 9 H -0.288 1.288 10 H -0.297 1.297 11 H -0.271 1.271 12 C 0.167 3.833 13 H 0.054 0.946 14 C -0.133 4.133 15 C -0.113 4.113 16 C -0.107 4.107 17 C -0.107 4.107 18 H 0.051 0.949 19 C -0.130 4.130 20 H 0.053 0.947 21 H 0.030 0.970 22 H 0.051 0.949 23 H 0.019 0.981 24 H 0.066 0.934 25 H 0.247 0.753 26 H 0.036 0.964 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.060 0.940 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.211 5.413 -7.691 10.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.008 3.992 3 N -0.312 5.312 4 C -0.366 4.366 5 H 0.073 0.927 6 C -0.241 4.241 7 N -0.568 5.568 8 Si 0.778 3.222 9 H -0.215 1.215 10 H -0.224 1.224 11 H -0.196 1.196 12 C 0.061 3.939 13 H 0.072 0.928 14 C -0.172 4.172 15 C -0.151 4.151 16 C -0.145 4.145 17 C -0.128 4.128 18 H 0.070 0.930 19 C -0.188 4.188 20 H 0.072 0.928 21 H 0.050 0.950 22 H 0.069 0.931 23 H 0.037 0.963 24 H 0.083 0.917 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.128 5.296 -7.591 10.135 hybrid contribution 0.245 -0.134 1.330 1.359 sum -3.882 5.163 -6.261 8.996 Atomic orbital electron populations 1.22194 0.98415 0.99911 1.00299 1.20903 0.91836 0.86427 1.00081 1.44180 1.74235 1.11387 1.01400 1.19068 1.33534 0.93685 0.90289 0.92730 1.25671 0.97947 0.98590 1.01922 1.70120 1.38497 1.17455 1.30752 0.85551 0.76651 0.78316 0.81729 1.21521 1.22409 1.19636 1.21306 0.92597 0.92588 0.87438 0.92808 1.22542 0.98753 0.96356 0.99548 1.22221 0.97825 0.94980 1.00084 1.22464 0.93960 0.98158 0.99918 1.22325 0.95701 0.96098 0.98646 0.93044 1.21703 0.96371 1.01102 0.99586 0.92796 0.95040 0.93050 0.96255 0.91664 0.94338 0.94541 0.92722 0.90802 0.93750 0.90214 0.91290 0.93909 0.92143 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.00 10.24 71.98 0.74 -5.26 16 2 C 0.13 6.44 5.94 86.38 0.51 6.95 16 3 N -0.59 -29.24 2.40 -674.03 -1.62 -30.86 16 4 C -0.23 -12.78 7.92 84.03 0.67 -12.11 16 5 H 0.06 3.00 6.78 -2.91 -0.02 2.98 16 6 C -0.05 -2.54 4.94 84.86 0.42 -2.12 16 7 N -0.92 -54.64 11.32 21.65 0.25 -54.39 16 8 Si 0.95 45.49 29.61 68.60 2.03 47.52 16 9 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 10 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 12 C 0.17 6.92 2.99 45.72 0.14 7.06 16 13 H 0.05 2.13 7.57 -2.39 -0.02 2.11 16 14 C -0.13 -5.37 6.27 31.36 0.20 -5.17 16 15 C -0.11 -3.78 6.83 31.71 0.22 -3.56 16 16 C -0.11 -3.14 6.33 31.89 0.20 -2.94 16 17 C -0.11 -3.81 3.04 -9.72 -0.03 -3.84 16 18 H 0.05 2.14 6.44 -2.38 -0.02 2.12 16 19 C -0.13 -3.84 9.12 71.98 0.66 -3.18 16 20 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 21 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.05 1.88 6.33 -2.39 -0.02 1.87 16 23 H 0.02 0.89 8.00 -2.38 -0.02 0.87 16 24 H 0.07 3.63 5.33 -2.39 -0.01 3.62 16 25 H 0.25 14.26 8.31 -92.70 -0.77 13.49 16 26 H 0.04 1.80 7.29 -2.39 -0.02 1.79 16 27 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.08 2.00 8.04 -2.39 -0.02 1.98 16 31 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.04 1.36 6.33 -2.38 -0.02 1.35 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.06 1.59 8.12 -2.39 -0.02 1.57 16 Total: -1.00 -59.92 263.81 5.42 -54.50 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 1.04 Total: 7.40 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: 3.71 Total: -24.17 kcal Atomic # 7 Polarization: -83.88 SS G_CDS: -1.37 Total: -85.25 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -59.92 5.42 -54.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307523941.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.543 kcal (2) G-P(sol) polarization free energy of solvation -59.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds