Wall clock time and date at job start Mon Mar 30 2020 02:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47041 * 2 1 4 4 C 1.36938 * 120.00212 * 94.24408 * 3 2 1 5 5 H 1.07994 * 119.99927 * 323.93487 * 4 3 2 6 6 C 1.38812 * 119.99576 * 143.93842 * 4 3 2 7 7 N 1.31620 * 120.00339 * 332.73126 * 6 4 3 8 8 Si 1.86799 * 119.99744 * 152.73936 * 6 4 3 9 9 H 1.48498 * 109.47013 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47275 * 239.99426 * 8 6 4 11 11 H 1.48500 * 109.47075 * 119.99308 * 8 6 4 12 12 C 1.46507 * 119.99582 * 274.24397 * 3 2 1 13 13 H 1.09000 * 110.01333 * 232.95288 * 12 3 2 14 14 C 1.54269 * 110.03274 * 354.33907 * 12 3 2 15 15 C 1.54889 * 104.19064 * 142.89685 * 14 12 3 16 16 C 1.54888 * 102.75177 * 322.05493 * 15 14 12 17 17 C 1.53867 * 110.03371 * 111.56083 * 12 3 2 18 18 H 1.08996 * 110.03509 * 121.42699 * 17 12 3 19 19 C 1.53003 * 110.03222 * 359.97438 * 17 12 3 20 20 H 1.09004 * 109.47079 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47151 * 300.00216 * 1 2 3 22 22 H 1.09001 * 109.47135 * 60.00019 * 1 2 3 23 23 H 1.09003 * 109.47151 * 239.99784 * 2 1 3 24 24 H 1.09001 * 109.47135 * 119.99981 * 2 1 3 25 25 H 0.96995 * 119.99966 * 354.34853 * 7 6 4 26 26 H 1.09004 * 110.48505 * 261.57559 * 14 12 3 27 27 H 1.08996 * 110.48437 * 24.08351 * 14 12 3 28 28 H 1.08999 * 110.75387 * 80.37691 * 15 14 12 29 29 H 1.09007 * 110.75325 * 203.73746 * 15 14 12 30 30 H 1.08999 * 110.48479 * 156.62432 * 16 15 14 31 31 H 1.08998 * 110.48575 * 279.13383 * 16 15 14 32 32 H 1.08999 * 109.46707 * 66.73702 * 19 17 12 33 33 H 1.09000 * 109.47100 * 186.73679 * 19 17 12 34 34 H 1.08999 * 109.47168 * 306.73761 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3293 1.9975 1.1826 5 1 1.7424 1.7970 2.0667 6 6 3.3989 2.8801 1.2450 7 7 4.4099 2.7488 0.4126 8 14 3.4034 4.2541 2.5105 9 1 2.1606 4.1852 3.3204 10 1 3.4698 5.5655 1.8171 11 1 4.5832 4.1040 3.3998 12 6 2.1739 2.1031 -1.2654 13 1 3.1818 2.5114 -1.3404 14 6 1.8978 1.1560 -2.4514 15 6 1.1669 2.0469 -3.4865 16 6 0.2666 2.9381 -2.5953 17 6 1.1377 3.2369 -1.3563 18 1 1.6426 4.1954 -1.4763 19 6 0.2689 3.2551 -0.0970 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 4.4474 1.9887 -0.1888 26 1 2.8335 0.7798 -2.8650 27 1 1.2602 0.3291 -2.1389 28 1 1.8794 2.6538 -4.0452 29 1 0.5629 1.4395 -4.1607 30 1 0.0119 3.8623 -3.1139 31 1 -0.6375 2.4010 -2.3085 32 1 0.8797 3.5335 0.7618 33 1 -0.5356 3.9800 -0.2211 34 1 -0.1564 2.2647 0.0653 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307523944.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:20 Heat of formation + Delta-G solvation = -0.917955 kcal Electronic energy + Delta-G solvation = -13947.966903 eV Core-core repulsion = 11880.577701 eV Total energy + Delta-G solvation = -2067.389201 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.25484 -36.12832 -33.93067 -31.95963 -30.51361 -28.37033 -26.18310 -24.74176 -22.99569 -21.26857 -20.04811 -18.81447 -16.96673 -16.71950 -15.83061 -15.47482 -14.74770 -14.54510 -14.29347 -13.91433 -13.61693 -13.24610 -13.03010 -12.54830 -12.26438 -12.03425 -11.95223 -11.91226 -11.66762 -11.44530 -11.37298 -11.27336 -11.11336 -10.97682 -10.32378 -8.72632 -7.97194 -5.36028 1.55395 1.61610 1.76867 2.66947 3.27468 3.59507 3.90577 3.91687 4.20548 4.38366 4.55154 4.62958 4.69284 4.79665 4.82560 4.86660 4.90316 4.98368 5.03413 5.07488 5.17480 5.24179 5.25664 5.41256 5.48338 5.60802 5.63779 5.75788 5.90732 6.07787 6.50913 7.25362 7.92126 8.36571 9.06908 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.035941 B = 0.015450 C = 0.014200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.876997 B = 1811.880810 C = 1971.351744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.130 3.870 3 N -0.599 5.599 4 C -0.323 4.323 5 H 0.036 0.964 6 C -0.068 4.068 7 N -0.935 5.935 8 Si 1.093 2.907 9 H -0.273 1.273 10 H -0.291 1.291 11 H -0.294 1.294 12 C 0.162 3.838 13 H 0.023 0.977 14 C -0.135 4.135 15 C -0.112 4.112 16 C -0.108 4.108 17 C -0.103 4.103 18 H 0.028 0.972 19 C -0.125 4.125 20 H 0.065 0.935 21 H 0.036 0.964 22 H 0.054 0.946 23 H 0.049 0.951 24 H 0.030 0.970 25 H 0.254 0.746 26 H 0.049 0.951 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.031 0.969 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.709 -2.120 -5.499 10.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.005 3.995 3 N -0.322 5.322 4 C -0.454 4.454 5 H 0.053 0.947 6 C -0.266 4.266 7 N -0.577 5.577 8 Si 0.920 3.080 9 H -0.198 1.198 10 H -0.218 1.218 11 H -0.221 1.221 12 C 0.055 3.945 13 H 0.041 0.959 14 C -0.173 4.173 15 C -0.150 4.150 16 C -0.145 4.145 17 C -0.124 4.124 18 H 0.047 0.953 19 C -0.182 4.182 20 H 0.083 0.917 21 H 0.055 0.945 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.048 0.952 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.884 -0.823 -4.938 9.339 hybrid contribution -0.280 -1.173 -0.200 1.222 sum -8.163 -1.996 -5.138 9.850 Atomic orbital electron populations 1.22250 0.97454 1.00673 1.00850 1.21013 0.93799 0.86119 0.98577 1.44155 1.76420 1.09340 1.02241 1.19688 1.09981 1.25938 0.89765 0.94672 1.26742 0.90917 1.05264 1.03634 1.70816 1.28488 1.32832 1.25522 0.83161 0.75767 0.74770 0.74327 1.19774 1.21800 1.22086 1.21108 0.96479 0.91890 0.85001 0.95925 1.22793 1.00110 0.98916 0.95439 1.22399 0.98275 0.97618 0.96710 1.22377 0.97726 0.99588 0.94841 1.22055 0.96828 0.97488 0.96008 0.95327 1.21821 0.97535 1.00981 0.97864 0.91658 0.94471 0.92707 0.93273 0.95189 0.93559 0.93202 0.89714 0.91970 0.89464 0.91335 0.91306 0.93439 0.94994 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 8.39 71.98 0.60 -4.59 16 2 C 0.13 5.32 5.68 86.38 0.49 5.81 16 3 N -0.60 -28.93 1.50 -674.01 -1.01 -29.93 16 4 C -0.32 -17.67 6.18 84.03 0.52 -17.15 16 5 H 0.04 1.99 7.96 -2.91 -0.02 1.97 16 6 C -0.07 -3.85 4.84 84.86 0.41 -3.44 16 7 N -0.93 -57.31 12.40 21.65 0.27 -57.04 16 8 Si 1.09 52.21 29.49 68.60 2.02 54.23 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 10 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 11 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 12 C 0.16 7.37 2.89 45.71 0.13 7.51 16 13 H 0.02 1.27 5.44 -2.39 -0.01 1.26 16 14 C -0.13 -4.86 5.62 31.67 0.18 -4.68 16 15 C -0.11 -3.31 6.91 31.88 0.22 -3.09 16 16 C -0.11 -3.40 6.36 31.71 0.20 -3.20 16 17 C -0.10 -4.29 3.48 -10.03 -0.03 -4.33 16 18 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 19 C -0.12 -5.25 7.69 71.98 0.55 -4.70 16 20 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 21 H 0.04 1.36 7.40 -2.39 -0.02 1.34 16 22 H 0.05 1.79 6.69 -2.39 -0.02 1.78 16 23 H 0.05 1.87 5.94 -2.39 -0.01 1.86 16 24 H 0.03 1.30 8.01 -2.39 -0.02 1.28 16 25 H 0.25 15.92 6.92 -92.71 -0.64 15.28 16 26 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 27 H 0.08 2.88 4.36 -2.39 -0.01 2.87 16 28 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.07 2.04 7.77 -2.39 -0.02 2.02 16 32 H 0.05 2.29 5.24 -2.39 -0.01 2.28 16 33 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.06 2.63 4.16 -2.39 -0.01 2.62 16 Total: -1.00 -61.76 249.61 5.75 -56.02 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 1.19 Total: 8.59 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 3.27 Total: -31.86 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -0.74 Total: -86.98 kcal Atomic # 14 Polarization: 52.21 SS G_CDS: 2.02 Total: 54.23 kcal Total: -61.76 5.75 -56.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307523944.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.099 kcal (2) G-P(sol) polarization free energy of solvation -61.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds