Wall clock time and date at job start Mon Mar 30 2020 01:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47147 * 2 1 4 4 C 1.53002 * 109.47118 * 120.00426 * 2 1 3 5 5 H 1.08988 * 112.95912 * 67.12107 * 4 2 1 6 6 C 1.53936 * 113.75195 * 295.47732 * 4 2 1 7 7 C 1.53942 * 86.33776 * 221.85314 * 6 4 2 8 8 N 1.47958 * 86.30060 * 23.66957 * 7 6 4 9 9 C 1.46905 * 110.99630 * 222.47451 * 8 7 6 10 10 H 1.08996 * 109.47567 * 59.11701 * 9 8 7 11 11 C 1.53001 * 109.46766 * 179.12046 * 9 8 7 12 12 C 1.50701 * 109.47298 * 299.11550 * 9 8 7 13 13 H 1.08004 * 119.99726 * 354.30701 * 12 9 8 14 14 C 1.37868 * 120.00439 * 174.30632 * 12 9 8 15 15 N 1.31513 * 120.00206 * 180.02562 * 14 12 9 16 16 Si 1.86803 * 119.99944 * 0.02562 * 14 12 9 17 17 H 1.48493 * 109.47388 * 89.99878 * 16 14 12 18 18 H 1.48505 * 109.47327 * 210.00259 * 16 14 12 19 19 H 1.48503 * 109.46901 * 330.00089 * 16 14 12 20 20 H 1.09001 * 109.46769 * 60.00064 * 1 2 3 21 21 H 1.09001 * 109.46839 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46930 * 299.99895 * 1 2 3 23 23 H 1.09003 * 109.46930 * 240.00105 * 2 1 3 24 24 H 1.09005 * 109.46971 * 184.77796 * 3 2 1 25 25 H 1.09001 * 109.46987 * 304.77672 * 3 2 1 26 26 H 1.08990 * 109.47163 * 64.77794 * 3 2 1 27 27 H 1.08996 * 113.73389 * 107.50288 * 6 4 2 28 28 H 1.09000 * 113.83607 * 336.22146 * 6 4 2 29 29 H 1.09000 * 113.75914 * 138.04179 * 7 6 4 30 30 H 1.08997 * 113.75687 * 269.29606 * 7 6 4 31 31 H 1.08995 * 109.47291 * 304.99950 * 11 9 8 32 32 H 1.08997 * 109.47360 * 65.00505 * 11 9 8 33 33 H 1.09000 * 109.46727 * 185.00255 * 11 9 8 34 34 H 0.96999 * 119.99863 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.8139 -1.7875 1.2466 6 6 1.6753 -0.0132 2.5664 7 6 3.1071 -0.3434 3.0255 8 7 3.4494 -0.4131 1.5878 9 6 4.3226 -1.5612 1.3096 10 1 3.8193 -2.4811 1.6071 11 6 4.6363 -1.6124 -0.1870 12 6 5.6055 -1.4166 2.0870 13 1 5.7964 -0.5156 2.6511 14 6 6.5355 -2.4343 2.0781 15 7 7.6548 -2.3083 2.7569 16 14 6.2057 -3.9924 1.1017 17 1 6.7332 -3.8335 -0.2772 18 1 6.8787 -5.1409 1.7600 19 1 4.7427 -4.2414 1.0464 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.1267 1.4436 -0.0856 25 1 1.6085 1.9804 -0.8441 26 1 1.7483 1.9310 0.9296 27 1 0.9020 -0.5244 3.1398 28 1 1.4857 1.0544 2.4548 29 1 3.5979 0.4733 3.5548 30 1 3.1927 -1.2983 3.5441 31 1 3.7050 -1.6275 -0.7532 32 1 5.2174 -0.7338 -0.4668 33 1 5.2100 -2.5127 -0.4073 34 1 8.3089 -3.0245 2.7509 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307696846.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:57 Heat of formation + Delta-G solvation = 23.513217 kcal Electronic energy + Delta-G solvation = -13369.737309 eV Core-core repulsion = 11303.407523 eV Total energy + Delta-G solvation = -2066.329786 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.59246 -34.54221 -33.05392 -31.06253 -26.83588 -26.19911 -25.77102 -24.36719 -21.08066 -19.97010 -18.11824 -16.67408 -15.62402 -15.06810 -14.30546 -14.12435 -13.30352 -12.95415 -12.77537 -12.28535 -12.13764 -12.03936 -11.90502 -11.24789 -11.10326 -10.91726 -10.65305 -10.54269 -10.30302 -10.05825 -10.01617 -9.73922 -9.31963 -8.97061 -8.56323 -7.74087 -6.06395 -4.04891 3.26982 3.35964 3.37331 4.40430 4.66293 5.05452 5.23963 5.25520 5.39141 5.56741 5.63132 5.83444 5.95456 5.98221 6.08724 6.16561 6.22862 6.24903 6.37038 6.44590 6.50331 6.55881 6.62301 6.72246 6.80050 6.86894 6.89833 7.14960 7.46120 7.83654 8.04024 8.63732 9.00997 9.56304 11.06769 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.049162 B = 0.011164 C = 0.010323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.409597 B = 2507.528943 C = 2711.622989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.076 4.076 3 C -0.133 4.133 4 C 0.027 3.973 5 H 0.065 0.935 6 C -0.150 4.150 7 C 0.025 3.975 8 N -0.457 5.457 9 C 0.147 3.853 10 H 0.004 0.996 11 C -0.136 4.136 12 C -0.504 4.504 13 H 0.079 0.921 14 C 0.070 3.930 15 N -0.900 5.900 16 Si 0.881 3.119 17 H -0.277 1.277 18 H -0.295 1.295 19 H -0.268 1.268 20 H 0.050 0.950 21 H 0.048 0.952 22 H 0.053 0.947 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.037 0.963 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.027 0.973 32 H 0.057 0.943 33 H 0.037 0.963 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.660 2.982 -3.856 13.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.095 4.095 3 C -0.191 4.191 4 C -0.083 4.083 5 H 0.083 0.917 6 C -0.187 4.187 7 C -0.104 4.104 8 N -0.180 5.180 9 C 0.039 3.961 10 H 0.021 0.979 11 C -0.194 4.194 12 C -0.542 4.542 13 H 0.098 0.902 14 C -0.131 4.131 15 N -0.539 5.539 16 Si 0.710 3.290 17 H -0.204 1.204 18 H -0.222 1.222 19 H -0.193 1.193 20 H 0.069 0.931 21 H 0.067 0.933 22 H 0.072 0.928 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.113 3.423 -4.126 13.247 hybrid contribution -0.215 -1.825 -0.207 1.849 sum -12.328 1.598 -4.333 13.165 Atomic orbital electron populations 1.21781 0.95879 1.01107 1.01254 1.20861 0.94233 0.97025 0.97362 1.21697 1.02553 0.94758 1.00042 1.23493 0.92934 0.97499 0.94337 0.91739 1.23523 0.97480 1.01075 0.96666 1.23444 0.93153 1.01191 0.92592 1.68456 1.03349 1.37821 1.08363 1.20235 0.94195 0.88446 0.93255 0.97888 1.21999 0.98787 1.00644 0.97967 1.20937 0.99969 1.04179 1.29122 0.90246 1.24919 0.94936 0.98067 0.95198 1.69890 1.08582 1.33444 1.41971 0.86916 0.78630 0.83301 0.80127 1.20377 1.22184 1.19340 0.93112 0.93278 0.92758 0.91737 0.91152 0.94414 0.92987 0.92453 0.89615 0.90502 0.91614 0.95433 0.92375 0.94465 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.04 37.16 0.34 -1.37 16 2 C -0.08 -1.13 3.10 -90.62 -0.28 -1.41 16 3 C -0.13 -1.95 8.58 37.16 0.32 -1.63 16 4 C 0.03 0.47 2.79 -66.53 -0.19 0.28 16 5 H 0.06 1.16 7.63 -51.94 -0.40 0.76 16 6 C -0.15 -2.32 6.88 -25.79 -0.18 -2.50 16 7 C 0.03 0.49 7.01 -2.76 -0.02 0.47 16 8 N -0.46 -9.54 4.75 -223.15 -1.06 -10.60 16 9 C 0.15 3.55 1.28 -68.86 -0.09 3.47 16 10 H 0.00 0.09 6.30 -51.93 -0.33 -0.24 16 11 C -0.14 -3.09 8.95 37.16 0.33 -2.75 16 12 C -0.50 -14.30 8.54 -34.44 -0.29 -14.59 16 13 H 0.08 2.47 7.85 -52.48 -0.41 2.06 16 14 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16 15 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 16 Si 0.88 22.17 24.65 -169.99 -4.19 17.98 16 17 H -0.28 -6.83 6.92 56.52 0.39 -6.44 16 18 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 19 H -0.27 -6.52 6.38 56.52 0.36 -6.16 16 20 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.62 7.60 -51.93 -0.39 0.22 16 23 H 0.06 1.00 7.17 -51.93 -0.37 0.63 16 24 H 0.07 1.20 7.69 -51.93 -0.40 0.80 16 25 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.73 6.10 -51.93 -0.32 0.42 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.09 1.24 6.11 -51.93 -0.32 0.92 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.07 1.34 7.91 -51.93 -0.41 0.93 16 31 H 0.03 0.54 6.72 -51.93 -0.35 0.19 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.04 0.86 4.12 -51.93 -0.21 0.65 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 257.75 15.07 3.88 3.88 Total: -1.00 -29.75 257.75 -6.38 -36.13 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -5.63 Total: -2.31 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -0.15 Total: -18.09 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: -0.29 Total: -37.59 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.19 Total: 17.98 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.75 -6.38 -36.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307696846.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.640 kcal (2) G-P(sol) polarization free energy of solvation -29.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds