Wall clock time and date at job start Mon Mar 30 2020 01:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47147 * 2 1 4 4 C 1.53002 * 109.47118 * 120.00426 * 2 1 3 5 5 H 1.08988 * 112.95912 * 67.12107 * 4 2 1 6 6 C 1.53936 * 113.75195 * 295.47732 * 4 2 1 7 7 C 1.53942 * 86.33776 * 221.85314 * 6 4 2 8 8 N 1.47958 * 86.30060 * 23.66957 * 7 6 4 9 9 C 1.46905 * 110.99630 * 222.47451 * 8 7 6 10 10 H 1.08996 * 109.47567 * 59.11701 * 9 8 7 11 11 C 1.53001 * 109.46766 * 179.12046 * 9 8 7 12 12 C 1.50701 * 109.47298 * 299.11550 * 9 8 7 13 13 H 1.08004 * 119.99726 * 354.30701 * 12 9 8 14 14 C 1.37868 * 120.00439 * 174.30632 * 12 9 8 15 15 N 1.31513 * 120.00206 * 180.02562 * 14 12 9 16 16 Si 1.86803 * 119.99944 * 0.02562 * 14 12 9 17 17 H 1.48493 * 109.47388 * 89.99878 * 16 14 12 18 18 H 1.48505 * 109.47327 * 210.00259 * 16 14 12 19 19 H 1.48503 * 109.46901 * 330.00089 * 16 14 12 20 20 H 1.09001 * 109.46769 * 60.00064 * 1 2 3 21 21 H 1.09001 * 109.46839 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46930 * 299.99895 * 1 2 3 23 23 H 1.09003 * 109.46930 * 240.00105 * 2 1 3 24 24 H 1.09005 * 109.46971 * 184.77796 * 3 2 1 25 25 H 1.09001 * 109.46987 * 304.77672 * 3 2 1 26 26 H 1.08990 * 109.47163 * 64.77794 * 3 2 1 27 27 H 1.08996 * 113.73389 * 107.50288 * 6 4 2 28 28 H 1.09000 * 113.83607 * 336.22146 * 6 4 2 29 29 H 1.09000 * 113.75914 * 138.04179 * 7 6 4 30 30 H 1.08997 * 113.75687 * 269.29606 * 7 6 4 31 31 H 1.08995 * 109.47291 * 304.99950 * 11 9 8 32 32 H 1.08997 * 109.47360 * 65.00505 * 11 9 8 33 33 H 1.09000 * 109.46727 * 185.00255 * 11 9 8 34 34 H 0.96999 * 119.99863 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.8139 -1.7875 1.2466 6 6 1.6753 -0.0132 2.5664 7 6 3.1071 -0.3434 3.0255 8 7 3.4494 -0.4131 1.5878 9 6 4.3226 -1.5612 1.3096 10 1 3.8193 -2.4811 1.6071 11 6 4.6363 -1.6124 -0.1870 12 6 5.6055 -1.4166 2.0870 13 1 5.7964 -0.5156 2.6511 14 6 6.5355 -2.4343 2.0781 15 7 7.6548 -2.3083 2.7569 16 14 6.2057 -3.9924 1.1017 17 1 6.7332 -3.8335 -0.2772 18 1 6.8787 -5.1409 1.7600 19 1 4.7427 -4.2414 1.0464 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.1267 1.4436 -0.0856 25 1 1.6085 1.9804 -0.8441 26 1 1.7483 1.9310 0.9296 27 1 0.9020 -0.5244 3.1398 28 1 1.4857 1.0544 2.4548 29 1 3.5979 0.4733 3.5548 30 1 3.1927 -1.2983 3.5441 31 1 3.7050 -1.6275 -0.7532 32 1 5.2174 -0.7338 -0.4668 33 1 5.2100 -2.5127 -0.4073 34 1 8.3089 -3.0245 2.7509 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307696846.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:57 Heat of formation + Delta-G solvation = 3.253291 kcal Electronic energy + Delta-G solvation = -13370.615846 eV Core-core repulsion = 11303.407523 eV Total energy + Delta-G solvation = -2067.208322 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.08509 -36.11594 -34.75996 -33.05662 -27.97923 -27.68673 -27.55529 -26.07684 -22.50505 -21.73572 -19.55388 -18.72471 -17.33458 -16.50064 -16.09466 -15.51258 -14.91754 -14.72890 -14.26981 -14.04343 -13.83821 -13.35460 -13.13399 -12.83842 -12.58471 -12.42779 -12.24412 -11.96677 -11.83896 -11.72847 -11.62437 -11.36034 -10.95465 -10.83719 -10.72980 -9.38863 -8.32103 -6.35330 1.27039 1.30089 1.40332 2.28386 3.02274 3.20986 3.70327 3.98526 4.17198 4.37306 4.42892 4.45542 4.52917 4.63873 4.71763 4.80628 4.85906 4.90901 4.94968 5.03401 5.07149 5.19327 5.22308 5.29659 5.33980 5.43282 5.61601 5.63798 5.69300 5.87608 6.14105 6.63217 6.70863 7.30141 8.84835 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.049162 B = 0.011164 C = 0.010323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.409597 B = 2507.528943 C = 2711.622989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 C -0.130 4.130 4 C 0.026 3.974 5 H 0.061 0.939 6 C -0.123 4.123 7 C 0.012 3.988 8 N -0.474 5.474 9 C 0.152 3.848 10 H -0.004 1.004 11 C -0.130 4.130 12 C -0.506 4.506 13 H 0.035 0.965 14 C 0.012 3.988 15 N -0.948 5.948 16 Si 0.944 3.056 17 H -0.265 1.265 18 H -0.292 1.292 19 H -0.252 1.252 20 H 0.066 0.934 21 H 0.054 0.946 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.039 0.961 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.032 0.968 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.308 2.599 -5.293 16.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.093 4.093 3 C -0.187 4.187 4 C -0.083 4.083 5 H 0.079 0.921 6 C -0.160 4.160 7 C -0.117 4.117 8 N -0.197 5.197 9 C 0.043 3.957 10 H 0.014 0.986 11 C -0.188 4.188 12 C -0.544 4.544 13 H 0.053 0.947 14 C -0.185 4.185 15 N -0.589 5.589 16 Si 0.770 3.230 17 H -0.190 1.190 18 H -0.220 1.220 19 H -0.176 1.176 20 H 0.085 0.915 21 H 0.073 0.927 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.058 0.942 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.120 0.880 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.785 3.054 -5.571 16.092 hybrid contribution 0.618 -1.598 0.307 1.741 sum -14.167 1.456 -5.264 15.183 Atomic orbital electron populations 1.21725 0.93118 1.01951 1.02544 1.20887 0.96421 0.96443 0.95597 1.21652 1.00617 0.95159 1.01276 1.23631 0.90205 0.97932 0.96539 0.92094 1.23397 0.95262 1.02168 0.95203 1.23473 0.96350 1.00085 0.91825 1.68459 1.05391 1.36428 1.09384 1.20071 0.92676 0.89429 0.93562 0.98623 1.21886 1.00027 0.99886 0.96994 1.21155 1.01990 1.02433 1.28811 0.94718 1.25778 0.94578 1.01737 0.96379 1.70041 1.09924 1.34879 1.44052 0.85883 0.79429 0.78767 0.78911 1.19030 1.21953 1.17565 0.91501 0.92693 0.91855 0.92440 0.94219 0.92255 0.92505 0.89831 0.88021 0.91628 0.93370 0.92437 0.93423 0.94912 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.04 71.98 0.65 -2.01 16 2 C -0.07 -1.98 3.10 -10.79 -0.03 -2.01 16 3 C -0.13 -3.47 8.58 71.98 0.62 -2.85 16 4 C 0.03 0.84 2.79 44.98 0.13 0.97 16 5 H 0.06 2.02 7.63 -2.39 -0.02 2.01 16 6 C -0.12 -3.49 6.88 31.24 0.22 -3.28 16 7 C 0.01 0.46 7.01 86.41 0.61 1.07 16 8 N -0.47 -19.60 4.75 -859.91 -4.09 -23.68 16 9 C 0.15 7.29 1.28 44.17 0.06 7.35 16 10 H 0.00 -0.18 6.30 -2.39 -0.02 -0.20 16 11 C -0.13 -5.73 8.95 71.98 0.64 -5.08 16 12 C -0.51 -29.60 8.54 25.60 0.22 -29.38 16 13 H 0.03 2.28 7.85 -2.91 -0.02 2.26 16 14 C 0.01 0.74 5.46 84.65 0.46 1.20 16 15 N -0.95 -60.35 13.96 21.44 0.30 -60.05 16 16 Si 0.94 45.63 24.65 68.60 1.69 47.32 16 17 H -0.26 -12.21 6.92 99.48 0.69 -11.52 16 18 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 19 H -0.25 -11.39 6.38 99.48 0.63 -10.75 16 20 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 21 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.06 1.14 7.60 -2.39 -0.02 1.12 16 23 H 0.06 1.61 7.17 -2.39 -0.02 1.59 16 24 H 0.04 1.30 7.69 -2.38 -0.02 1.28 16 25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.06 1.44 6.10 -2.39 -0.01 1.43 16 27 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.10 2.60 6.11 -2.39 -0.01 2.58 16 29 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.05 2.01 7.91 -2.39 -0.02 1.99 16 31 H 0.06 2.15 6.72 -2.39 -0.02 2.13 16 32 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.03 1.44 4.12 -2.39 -0.01 1.43 16 34 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -65.59 257.75 2.42 -63.16 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 0.96 Total: 7.27 kcal Atomic # 6 Polarization: -37.59 SS G_CDS: 3.56 Total: -34.02 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -3.79 Total: -83.73 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.69 Total: 47.32 kcal Total: -65.59 2.42 -63.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307696846.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.415 kcal (2) G-P(sol) polarization free energy of solvation -65.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds