Wall clock time and date at job start Mon Mar 30 2020 01:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46924 * 2 1 4 4 C 1.52998 * 109.46880 * 119.99858 * 2 1 3 5 5 H 1.08999 * 113.03602 * 288.65888 * 4 2 1 6 6 C 1.53932 * 113.76173 * 60.37913 * 4 2 1 7 7 C 1.53927 * 86.34570 * 138.03444 * 6 4 2 8 8 N 1.47963 * 113.75682 * 156.93730 * 4 2 1 9 9 C 1.46904 * 110.99729 * 108.09932 * 8 4 2 10 10 H 1.08995 * 109.47725 * 279.24426 * 9 8 4 11 11 C 1.53001 * 109.47235 * 39.24625 * 9 8 4 12 12 C 1.50701 * 109.46982 * 159.24262 * 9 8 4 13 13 H 1.07998 * 119.99908 * 354.57915 * 12 9 8 14 14 C 1.37881 * 120.00118 * 174.58078 * 12 9 8 15 15 N 1.31512 * 119.99534 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 119.99957 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47337 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47013 * 119.99795 * 16 14 12 19 19 H 1.48493 * 109.46935 * 239.99657 * 16 14 12 20 20 H 1.09002 * 109.47171 * 300.00144 * 1 2 3 21 21 H 1.09004 * 109.46668 * 60.00153 * 1 2 3 22 22 H 1.08992 * 109.47327 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47171 * 239.99856 * 2 1 3 24 24 H 1.09006 * 109.46531 * 184.96457 * 3 2 1 25 25 H 1.08992 * 109.47502 * 304.96536 * 3 2 1 26 26 H 1.08996 * 109.47108 * 64.97159 * 3 2 1 27 27 H 1.09004 * 113.73007 * 23.67846 * 6 4 2 28 28 H 1.09001 * 113.73629 * 252.40101 * 6 4 2 29 29 H 1.09005 * 113.76054 * 90.59403 * 7 6 4 30 30 H 1.08996 * 113.76569 * 221.85245 * 7 6 4 31 31 H 1.09001 * 109.47147 * 49.22876 * 11 9 8 32 32 H 1.08995 * 109.47476 * 169.23315 * 11 9 8 33 33 H 1.09001 * 109.46759 * 289.23867 * 11 9 8 34 34 H 0.97008 * 119.99662 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.8795 -0.1527 2.1653 6 6 1.5902 -2.1903 1.3444 7 6 3.0236 -2.4959 1.8147 8 7 3.4134 -1.2540 1.1111 9 6 4.3646 -0.4716 1.9118 10 1 4.6360 0.4347 1.3706 11 6 3.7185 -0.0944 3.2465 12 6 5.6016 -1.2936 2.1672 13 1 5.6392 -2.3254 1.8502 14 6 6.6852 -0.7286 2.8055 15 7 6.6394 0.5279 3.1910 16 14 8.2188 -1.7473 3.1213 17 1 8.0180 -3.1209 2.5938 18 1 9.3792 -1.1195 2.4397 19 1 8.4781 -1.8116 4.5820 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 3.1264 1.4438 -0.0889 25 1 1.6059 1.9814 -0.8421 26 1 1.7512 1.9300 0.9311 27 1 1.3401 -2.6357 0.3814 28 1 0.8311 -2.3683 2.1061 29 1 3.1510 -2.4464 2.8961 30 1 3.4456 -3.4010 1.3779 31 1 3.2765 -0.9817 3.6998 32 1 4.4763 0.3155 3.9140 33 1 2.9421 0.6515 3.0763 34 1 7.4020 0.9256 3.6398 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307696847.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:00 Heat of formation + Delta-G solvation = 23.263533 kcal Electronic energy + Delta-G solvation = -13347.002779 eV Core-core repulsion = 11280.662166 eV Total energy + Delta-G solvation = -2066.340613 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.59439 -34.49168 -33.05524 -30.30600 -26.89537 -25.92115 -25.47719 -24.51185 -20.94833 -20.01651 -18.13654 -16.15207 -15.47227 -14.74780 -14.30563 -13.83941 -13.64043 -12.86216 -12.34847 -12.18709 -12.01551 -11.86832 -11.40301 -11.23268 -10.85274 -10.77069 -10.60425 -10.43818 -10.29421 -10.22742 -9.86008 -9.70893 -9.27421 -8.72941 -8.40950 -7.48285 -6.00265 -4.03637 3.30404 3.38256 3.43022 4.43436 4.87797 5.18693 5.32509 5.34653 5.47101 5.69405 5.80244 5.97491 6.02182 6.13882 6.20554 6.22465 6.38224 6.39863 6.47588 6.54990 6.67674 6.73802 6.78670 6.85166 6.87322 7.10122 7.22020 7.68653 7.82060 8.01888 8.40108 8.54783 9.03261 9.61199 11.07945 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.053648 B = 0.010186 C = 0.009328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.791149 B = 2748.286414 C = 3000.886737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.075 4.075 3 C -0.143 4.143 4 C 0.020 3.980 5 H 0.084 0.916 6 C -0.148 4.148 7 C 0.014 3.986 8 N -0.471 5.471 9 C 0.178 3.822 10 H 0.045 0.955 11 C -0.168 4.168 12 C -0.501 4.501 13 H 0.060 0.940 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.894 3.106 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.285 1.285 20 H 0.049 0.951 21 H 0.048 0.952 22 H 0.052 0.948 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.029 0.971 32 H 0.079 0.921 33 H 0.017 0.983 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.697 -1.514 -2.903 10.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.094 4.094 3 C -0.200 4.200 4 C -0.090 4.090 5 H 0.101 0.899 6 C -0.186 4.186 7 C -0.115 4.115 8 N -0.193 5.193 9 C 0.071 3.929 10 H 0.063 0.937 11 C -0.226 4.226 12 C -0.540 4.540 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.722 3.278 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.212 1.212 20 H 0.068 0.932 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.091 0.909 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.096 0.904 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.098 0.902 33 H 0.036 0.964 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.236 -1.400 -3.459 9.961 hybrid contribution 0.725 -0.276 1.163 1.398 sum -8.511 -1.677 -2.296 8.974 Atomic orbital electron populations 1.21776 0.95993 1.01206 1.00945 1.20904 0.94122 0.96052 0.98331 1.21780 1.01998 0.95769 1.00466 1.23673 0.93066 0.94595 0.97651 0.89863 1.23437 0.97239 0.97106 1.00795 1.23560 0.93093 0.96152 0.98669 1.68695 1.03172 1.03386 1.44031 1.19653 0.90322 0.94451 0.88499 0.93737 1.22416 0.99478 0.97978 1.02762 1.21145 0.98259 0.97895 1.36703 0.92201 1.24940 0.98531 0.94983 0.95830 1.69944 1.30728 1.12028 1.40515 0.86505 0.83147 0.80470 0.77687 1.19783 1.21049 1.21178 0.93179 0.93256 0.92930 0.90934 0.91974 0.93700 0.93355 0.90416 0.92683 0.91091 0.91215 0.95199 0.90188 0.96434 0.93105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.00 37.16 0.33 -1.49 16 2 C -0.08 -1.21 2.90 -90.62 -0.26 -1.47 16 3 C -0.14 -2.32 9.19 37.16 0.34 -1.97 16 4 C 0.02 0.36 2.45 -66.66 -0.16 0.20 16 5 H 0.08 1.61 5.05 -51.93 -0.26 1.34 16 6 C -0.15 -2.44 6.92 -25.80 -0.18 -2.62 16 7 C 0.01 0.28 6.58 -2.77 -0.02 0.26 16 8 N -0.47 -10.39 6.14 -224.15 -1.38 -11.76 16 9 C 0.18 4.55 2.66 -68.86 -0.18 4.37 16 10 H 0.04 1.27 7.88 -51.93 -0.41 0.87 16 11 C -0.17 -4.02 7.78 37.16 0.29 -3.74 16 12 C -0.50 -13.98 8.08 -34.44 -0.28 -14.25 16 13 H 0.06 1.68 7.31 -52.49 -0.38 1.30 16 14 C 0.06 1.63 5.26 -17.82 -0.09 1.54 16 15 N -0.89 -25.83 11.74 55.43 0.65 -25.18 16 16 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 20 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.64 7.45 -51.93 -0.39 0.25 16 23 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 24 H 0.06 1.16 7.88 -51.93 -0.41 0.75 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 1.20 8.08 -51.93 -0.42 0.78 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 1.48 5.82 -51.93 -0.30 1.18 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 31 H 0.03 0.67 5.80 -51.93 -0.30 0.37 16 32 H 0.08 2.14 6.34 -51.93 -0.33 1.81 16 33 H 0.02 0.38 6.42 -51.93 -0.33 0.04 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 262.90 15.07 3.96 3.96 Total: -1.00 -28.45 262.90 -7.63 -36.08 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -5.63 Total: -0.55 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -0.21 Total: -19.18 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: -0.73 Total: -36.95 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.45 -7.63 -36.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307696847.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.343 kcal (2) G-P(sol) polarization free energy of solvation -28.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds