Wall clock time and date at job start Mon Mar 30 2020 01:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47239 * 2 1 4 4 C 1.53000 * 109.46925 * 120.00233 * 2 1 3 5 5 H 1.09006 * 112.74409 * 292.58294 * 4 2 1 6 6 C 1.53514 * 113.47757 * 161.82000 * 4 2 1 7 7 C 1.53637 * 83.53299 * 219.22328 * 6 4 2 8 8 N 1.47476 * 113.48015 * 63.35372 * 4 2 1 9 9 C 1.46899 * 111.00183 * 253.47493 * 8 4 2 10 10 H 1.08994 * 109.47134 * 58.64681 * 9 8 4 11 11 C 1.53003 * 109.47114 * 298.64101 * 9 8 4 12 12 C 1.50701 * 109.46899 * 178.64700 * 9 8 4 13 13 H 1.07998 * 120.00275 * 359.97438 * 12 9 8 14 14 C 1.37882 * 119.99805 * 179.97438 * 12 9 8 15 15 N 1.31506 * 120.00125 * 0.02562 * 14 12 9 16 16 Si 1.86805 * 119.99826 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.46850 * 60.00060 * 16 14 12 18 18 H 1.48501 * 109.47036 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46953 * 300.00275 * 16 14 12 20 20 H 1.09008 * 109.47068 * 59.99774 * 1 2 3 21 21 H 1.08996 * 109.47606 * 300.00366 * 1 2 3 22 22 H 1.09004 * 109.47482 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46733 * 239.99787 * 2 1 3 24 24 H 1.09005 * 109.47155 * 57.68146 * 3 2 1 25 25 H 1.09001 * 109.47199 * 177.67786 * 3 2 1 26 26 H 1.09001 * 109.47397 * 297.68354 * 3 2 1 27 27 H 1.08996 * 114.16570 * 332.84665 * 6 4 2 28 28 H 1.08997 * 114.17116 * 105.56190 * 6 4 2 29 29 H 1.08998 * 113.42455 * 271.20772 * 7 6 4 30 30 H 1.08996 * 113.56877 * 140.75949 * 7 6 4 31 31 H 1.09003 * 109.46898 * 48.65990 * 11 9 8 32 32 H 1.08990 * 109.47061 * 168.65557 * 11 9 8 33 33 H 1.09003 * 109.47215 * 288.66183 * 11 9 8 34 34 H 0.96999 * 120.00091 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.8164 -0.1805 2.1689 6 6 3.5050 -1.1671 1.1428 7 6 2.9954 -2.4200 1.8715 8 7 1.6638 -2.1464 1.2995 9 6 0.6066 -2.3771 2.2930 10 1 -0.2658 -1.7740 2.0419 11 6 1.1164 -1.9838 3.6810 12 6 0.2262 -3.8354 2.2923 13 1 0.7201 -4.5219 1.6207 14 6 -0.7524 -4.2930 3.1491 15 7 -1.3541 -3.4569 3.9665 16 14 -1.2243 -6.1004 3.1476 17 1 -0.0357 -6.9226 3.4887 18 1 -2.2922 -6.3339 4.1529 19 1 -1.7198 -6.4815 1.8007 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8932 -0.5139 -0.8900 24 1 1.6431 1.9682 0.8685 25 1 3.1292 1.4427 0.0416 26 1 1.7110 1.9442 -0.9100 27 1 3.8427 -1.3505 0.1228 28 1 4.1991 -0.5622 1.7262 29 1 3.0278 -2.3329 2.9575 30 1 3.4414 -3.3464 1.5095 31 1 1.5767 -0.9969 3.6327 32 1 0.2818 -1.9616 4.3816 33 1 1.8539 -2.7127 4.0172 34 1 -2.0423 -3.7789 4.5695 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307696848.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:03 Heat of formation + Delta-G solvation = 27.609489 kcal Electronic energy + Delta-G solvation = -13356.719082 eV Core-core repulsion = 11290.566924 eV Total energy + Delta-G solvation = -2066.152158 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.79411 -34.46255 -33.12074 -30.30298 -26.95521 -25.85294 -25.13352 -24.80573 -21.03408 -19.86655 -18.24791 -16.14292 -15.51521 -14.67704 -14.28367 -13.83366 -13.74041 -12.79433 -12.33257 -12.20346 -11.96764 -11.71193 -11.36626 -11.32372 -10.97085 -10.83547 -10.58720 -10.37949 -10.20815 -10.02110 -9.97483 -9.57129 -9.38566 -8.78886 -8.34713 -7.56033 -5.97527 -3.99947 3.34935 3.38644 3.42321 4.45007 4.94775 5.13227 5.34011 5.34963 5.48521 5.70523 5.76897 5.96547 6.04505 6.15426 6.23100 6.27825 6.35148 6.40951 6.48399 6.51553 6.69313 6.75320 6.77434 6.84306 6.95461 7.09714 7.12847 7.69319 7.85911 8.03684 8.35925 8.59662 9.05735 9.64467 11.10454 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.048457 B = 0.010346 C = 0.009711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.690673 B = 2705.710305 C = 2882.726564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.075 4.075 3 C -0.143 4.143 4 C 0.024 3.976 5 H 0.072 0.928 6 C -0.148 4.148 7 C -0.004 4.004 8 N -0.458 5.458 9 C 0.176 3.824 10 H 0.042 0.958 11 C -0.166 4.166 12 C -0.496 4.496 13 H 0.059 0.941 14 C 0.057 3.943 15 N -0.896 5.896 16 Si 0.896 3.104 17 H -0.279 1.279 18 H -0.289 1.289 19 H -0.277 1.277 20 H 0.041 0.959 21 H 0.047 0.953 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.012 0.988 32 H 0.080 0.920 33 H 0.038 0.962 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.275 6.474 -4.268 9.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.094 4.094 3 C -0.201 4.201 4 C -0.086 4.086 5 H 0.090 0.910 6 C -0.186 4.186 7 C -0.133 4.133 8 N -0.180 5.180 9 C 0.069 3.931 10 H 0.060 0.940 11 C -0.224 4.224 12 C -0.535 4.535 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.536 5.536 16 Si 0.724 3.276 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.203 1.203 20 H 0.060 0.940 21 H 0.066 0.934 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.030 0.970 32 H 0.099 0.901 33 H 0.057 0.943 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.845 6.095 -4.711 9.670 hybrid contribution -0.217 -0.637 0.990 1.197 sum 5.628 5.459 -3.721 8.679 Atomic orbital electron populations 1.21773 0.95254 1.02889 1.00142 1.20940 0.95996 0.94541 0.97904 1.21798 1.00571 0.96668 1.01044 1.23411 0.94091 0.93667 0.97433 0.90986 1.23251 0.96109 0.98450 1.00800 1.23753 0.92926 0.97331 0.99293 1.69080 1.02618 1.06822 1.39501 1.19707 0.90146 0.97281 0.85979 0.94013 1.22414 1.01299 0.95849 1.02879 1.21008 1.19582 0.93050 1.19848 0.92237 1.24934 0.96195 0.97680 0.95527 1.69902 1.25954 1.34230 1.23475 0.86595 0.77981 0.85342 0.77673 1.20426 1.21432 1.20277 0.93972 0.93418 0.91148 0.91292 0.93119 0.93085 0.93224 0.90095 0.92288 0.90457 0.91440 0.96963 0.90135 0.94341 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.48 37.16 0.32 -2.15 16 2 C -0.07 -1.21 2.82 -90.62 -0.26 -1.47 16 3 C -0.14 -1.88 9.16 37.16 0.34 -1.54 16 4 C 0.02 0.43 2.21 -71.44 -0.16 0.28 16 5 H 0.07 1.39 5.88 -51.93 -0.31 1.08 16 6 C -0.15 -2.41 7.85 -26.13 -0.21 -2.61 16 7 C 0.00 -0.08 7.32 -7.48 -0.05 -0.13 16 8 N -0.46 -10.07 5.77 -229.70 -1.33 -11.39 16 9 C 0.18 4.48 2.22 -68.86 -0.15 4.33 16 10 H 0.04 1.16 6.92 -51.93 -0.36 0.80 16 11 C -0.17 -4.00 7.32 37.16 0.27 -3.73 16 12 C -0.50 -13.97 8.69 -34.44 -0.30 -14.26 16 13 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 14 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 15 N -0.90 -25.87 11.47 55.43 0.64 -25.24 16 16 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 22 H 0.07 1.42 7.13 -51.93 -0.37 1.04 16 23 H 0.07 1.13 8.05 -51.93 -0.42 0.71 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.62 8.02 -51.93 -0.42 0.20 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 1.55 4.89 -51.93 -0.25 1.30 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.01 0.25 5.74 -51.93 -0.30 -0.04 16 32 H 0.08 2.14 6.46 -51.93 -0.34 1.80 16 33 H 0.04 0.92 6.54 -51.93 -0.34 0.58 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 262.12 15.07 3.95 3.95 Total: -1.00 -28.44 262.12 -7.65 -36.09 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -5.60 Total: -0.44 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -0.29 Total: -19.77 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: -0.69 Total: -36.63 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.44 -7.65 -36.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307696848.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.697 kcal (2) G-P(sol) polarization free energy of solvation -28.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds