Wall clock time and date at job start Mon Mar 30 2020 01:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.47082 * 2 1 4 4 C 1.53003 * 109.47557 * 119.99915 * 2 1 3 5 5 H 1.08996 * 109.46532 * 295.96200 * 4 2 1 6 6 C 1.53003 * 109.46794 * 55.95819 * 4 2 1 7 7 N 1.46496 * 109.46978 * 175.95949 * 4 2 1 8 8 C 1.36945 * 119.99476 * 120.96534 * 7 4 2 9 9 H 1.08002 * 119.99179 * 215.28796 * 8 7 4 10 10 C 1.38804 * 120.00216 * 35.01669 * 8 7 4 11 11 N 1.31623 * 119.99998 * 19.23129 * 10 8 7 12 12 Si 1.86797 * 120.00055 * 199.23373 * 10 8 7 13 13 H 1.48503 * 109.47004 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47547 * 119.99696 * 12 10 8 15 15 H 1.48500 * 109.47380 * 239.99819 * 12 10 8 16 16 C 1.46493 * 120.00428 * 300.96090 * 7 4 2 17 17 C 1.53004 * 117.50086 * 194.32308 * 16 7 4 18 18 C 1.52991 * 117.50096 * 125.66063 * 16 7 4 19 19 H 1.09007 * 109.46751 * 297.00995 * 1 2 3 20 20 H 1.08994 * 109.47036 * 57.00904 * 1 2 3 21 21 H 1.09001 * 109.46890 * 177.01234 * 1 2 3 22 22 H 1.09000 * 109.46945 * 239.99986 * 2 1 3 23 23 H 1.08998 * 109.46804 * 180.02562 * 3 2 1 24 24 H 1.09005 * 109.46590 * 300.00165 * 3 2 1 25 25 H 1.08997 * 109.46949 * 59.99743 * 3 2 1 26 26 H 1.09003 * 109.46674 * 60.00564 * 6 4 2 27 27 H 1.08997 * 109.47012 * 179.97438 * 6 4 2 28 28 H 1.08994 * 109.47229 * 300.00203 * 6 4 2 29 29 H 0.97001 * 119.99751 * 184.97904 * 11 10 8 30 30 H 1.09006 * 115.54670 * 339.99160 * 16 7 4 31 31 H 1.08995 * 117.49547 * 359.97438 * 17 16 7 32 32 H 1.09000 * 117.49879 * 145.02017 * 17 16 7 33 33 H 1.09004 * 117.50264 * 214.98540 * 18 16 7 34 34 H 1.09000 * 117.49779 * 0.02562 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.7371 -0.1673 2.1377 6 6 1.4488 -2.1314 1.3011 7 7 3.5018 -0.8060 1.2014 8 6 4.2530 -0.2477 2.2012 9 1 5.2051 0.2073 1.9712 10 6 3.7882 -0.2617 3.5090 11 7 2.8478 -1.1113 3.8641 12 14 4.4974 0.9253 4.7650 13 1 5.5340 1.7693 4.1182 14 1 3.4135 1.7910 5.2951 15 1 5.1089 0.1588 5.8803 16 6 4.1599 -1.4880 0.0844 17 6 5.6401 -1.8406 0.2451 18 6 5.2205 -0.7071 -0.6941 19 1 -0.3633 0.4668 0.9157 20 1 -0.3633 0.5595 -0.8619 21 1 -0.3633 -1.0263 -0.0536 22 1 1.8933 -0.5138 -0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9564 0.8899 26 1 1.7519 -2.6853 0.4126 27 1 1.8125 -2.6454 2.1908 28 1 0.3613 -2.0683 1.3366 29 1 2.4719 -1.0731 4.7575 30 1 3.5348 -2.1835 -0.4757 31 1 6.1243 -1.5647 1.1819 32 1 5.9889 -2.7678 -0.2096 33 1 5.2934 -0.8889 -1.7664 34 1 5.4289 0.3141 -0.3748 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307966962.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:29 Heat of formation + Delta-G solvation = 16.739285 kcal Electronic energy + Delta-G solvation = -13596.230099 eV Core-core repulsion = 11529.606574 eV Total energy + Delta-G solvation = -2066.623526 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.42399 -36.80000 -34.66341 -32.02614 -30.17906 -27.66808 -26.00567 -23.86208 -22.89515 -21.98321 -20.19544 -18.20656 -17.12845 -16.36207 -15.75677 -15.07403 -15.02989 -14.57441 -13.93340 -13.70428 -13.18673 -13.05254 -12.89456 -12.69641 -12.66611 -12.39476 -12.19517 -12.04628 -11.79645 -11.65611 -11.43804 -11.04791 -10.98289 -10.73419 -10.32741 -8.39830 -7.76583 -5.33136 1.42327 1.46849 1.55056 2.51607 3.21663 3.50514 3.56255 4.17561 4.34392 4.37032 4.46394 4.53370 4.67140 4.84908 4.92394 4.93822 4.97225 4.98275 5.09894 5.15665 5.26241 5.27239 5.38980 5.41141 5.50429 5.57913 5.65283 5.70624 5.88461 6.03591 6.51031 7.25514 7.97158 8.45891 9.19202 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.025986 B = 0.016734 C = 0.013250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.264695 B = 1672.864219 C = 2112.641841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C -0.123 4.123 4 C 0.199 3.801 5 H 0.048 0.952 6 C -0.140 4.140 7 N -0.560 5.560 8 C -0.252 4.252 9 H 0.050 0.950 10 C -0.032 4.032 11 N -0.910 5.910 12 Si 0.945 3.055 13 H -0.273 1.273 14 H -0.290 1.290 15 H -0.295 1.295 16 C 0.112 3.888 17 C -0.203 4.203 18 C -0.204 4.204 19 H 0.041 0.959 20 H 0.065 0.935 21 H 0.059 0.941 22 H 0.062 0.938 23 H 0.040 0.960 24 H 0.059 0.941 25 H 0.031 0.969 26 H 0.039 0.961 27 H 0.037 0.963 28 H 0.052 0.948 29 H 0.247 0.753 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.433 1.137 -8.081 8.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.126 4.126 3 C -0.181 4.181 4 C 0.093 3.907 5 H 0.066 0.934 6 C -0.199 4.199 7 N -0.277 5.277 8 C -0.383 4.383 9 H 0.068 0.932 10 C -0.230 4.230 11 N -0.554 5.554 12 Si 0.774 3.226 13 H -0.198 1.198 14 H -0.216 1.216 15 H -0.222 1.222 16 C 0.003 3.997 17 C -0.242 4.242 18 C -0.245 4.245 19 H 0.061 0.939 20 H 0.084 0.916 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.059 0.941 24 H 0.078 0.922 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.119 0.881 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.493 1.077 -7.870 8.325 hybrid contribution 0.544 0.522 1.208 1.424 sum -1.949 1.599 -6.662 7.123 Atomic orbital electron populations 1.21804 0.94547 1.01808 1.01286 1.21595 0.95758 0.96443 0.98780 1.21557 1.00602 0.95993 0.99909 1.20185 0.81628 0.93890 0.95007 0.93426 1.22047 0.99115 0.98754 0.99941 1.43616 1.01475 1.61337 1.21243 1.19071 1.03624 1.29216 0.86348 0.93211 1.25664 1.00215 0.99005 0.98089 1.70227 1.31363 1.34710 1.19070 0.85577 0.77947 0.79446 0.79655 1.19780 1.21623 1.22182 1.21174 0.88358 0.97069 0.93060 1.23082 1.00870 0.99458 1.00762 1.23300 1.08365 0.95741 0.97093 0.93947 0.91572 0.92185 0.91993 0.94076 0.92195 0.94985 0.94221 0.94372 0.92900 0.94363 0.88078 0.91297 0.88343 0.87869 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.12 8.63 71.98 0.62 -3.50 16 2 C -0.11 -3.83 2.44 -10.79 -0.03 -3.86 16 3 C -0.12 -4.46 9.07 71.99 0.65 -3.81 16 4 C 0.20 8.92 1.36 44.99 0.06 8.98 16 5 H 0.05 2.51 6.29 -2.39 -0.02 2.50 16 6 C -0.14 -5.93 8.62 71.98 0.62 -5.31 16 7 N -0.56 -26.90 2.11 -654.27 -1.38 -28.28 16 8 C -0.25 -13.56 8.15 84.03 0.68 -12.88 16 9 H 0.05 2.75 7.08 -2.91 -0.02 2.73 16 10 C -0.03 -1.78 4.78 84.86 0.41 -1.37 16 11 N -0.91 -52.07 10.71 21.65 0.23 -51.83 16 12 Si 0.94 44.94 29.60 68.60 2.03 46.97 16 13 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 14 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 15 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 16 C 0.11 4.65 5.36 44.99 0.24 4.89 16 17 C -0.20 -7.99 9.80 30.62 0.30 -7.69 16 18 C -0.20 -7.50 10.07 30.62 0.31 -7.19 16 19 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 20 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 21 H 0.06 1.70 6.54 -2.39 -0.02 1.69 16 22 H 0.06 2.17 7.50 -2.39 -0.02 2.15 16 23 H 0.04 1.66 7.72 -2.39 -0.02 1.64 16 24 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 25 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.04 1.52 6.95 -2.39 -0.02 1.50 16 27 H 0.04 1.88 7.20 -2.39 -0.02 1.87 16 28 H 0.05 1.98 6.43 -2.39 -0.02 1.96 16 29 H 0.25 13.81 8.32 -92.71 -0.77 13.04 16 30 H 0.10 3.86 6.99 -2.38 -0.02 3.85 16 31 H 0.07 3.11 6.91 -2.39 -0.02 3.09 16 32 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 33 H 0.10 3.13 8.14 -2.38 -0.02 3.11 16 34 H 0.07 2.69 8.00 -2.39 -0.02 2.67 16 Total: -1.00 -58.02 266.80 5.80 -52.22 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 1.04 Total: 12.66 kcal Atomic # 6 Polarization: -35.60 SS G_CDS: 3.87 Total: -31.73 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -1.15 Total: -80.12 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -58.02 5.80 -52.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307966962.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.957 kcal (2) G-P(sol) polarization free energy of solvation -58.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds