Wall clock time and date at job start Mon Mar 30 2020 02:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.46956 * 2 1 4 4 C 1.36932 * 120.00292 * 267.25461 * 3 2 1 5 5 H 1.08000 * 120.00697 * 185.28202 * 4 3 2 6 6 C 1.38822 * 119.99758 * 5.27960 * 4 3 2 7 7 N 1.31620 * 119.99505 * 27.87355 * 6 4 3 8 8 Si 1.86798 * 119.99877 * 207.87169 * 6 4 3 9 9 H 1.48500 * 109.47035 * 95.00007 * 8 6 4 10 10 H 1.48506 * 109.46980 * 214.99355 * 8 6 4 11 11 H 1.48494 * 109.47468 * 334.99530 * 8 6 4 12 12 C 1.46498 * 120.00016 * 87.25824 * 3 2 1 13 13 H 1.09007 * 109.47251 * 180.02562 * 12 3 2 14 14 C 1.53003 * 109.47558 * 59.99964 * 12 3 2 15 15 C 1.53004 * 109.47223 * 299.99814 * 12 3 2 16 16 C 1.53783 * 113.61355 * 294.79346 * 15 12 3 17 17 C 1.53780 * 87.07624 * 220.01651 * 16 15 12 18 18 C 1.53780 * 87.17708 * 25.38903 * 17 16 15 19 19 H 1.08997 * 109.46880 * 299.99558 * 1 2 3 20 20 H 1.08990 * 109.46706 * 60.00383 * 1 2 3 21 21 H 1.09008 * 109.46734 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47411 * 239.99756 * 2 1 3 23 23 H 1.09003 * 109.47131 * 120.00109 * 2 1 3 24 24 H 0.97003 * 119.99070 * 179.97438 * 7 6 4 25 25 H 1.09002 * 109.46657 * 303.48584 * 14 12 3 26 26 H 1.08993 * 109.47012 * 63.48132 * 14 12 3 27 27 H 1.08995 * 109.47538 * 183.48839 * 14 12 3 28 28 H 1.09001 * 112.84674 * 65.98536 * 15 12 3 29 29 H 1.08992 * 113.61974 * 105.46606 * 16 15 12 30 30 H 1.09004 * 113.60887 * 334.55981 * 16 15 12 31 31 H 1.09012 * 113.61347 * 139.98361 * 17 16 15 32 32 H 1.09002 * 113.61442 * 270.79445 * 17 16 15 33 33 H 1.09003 * 113.61150 * 89.15861 * 18 17 16 34 34 H 1.08999 * 113.61392 * 220.06125 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3001 2.0078 -1.1845 5 1 2.7401 2.9941 -1.1824 6 6 2.0202 1.3753 -2.3881 7 7 1.0441 0.4950 -2.4574 8 14 3.0288 1.7735 -3.9091 9 1 4.1248 0.7814 -4.0499 10 1 2.1562 1.7206 -5.1095 11 1 3.6072 3.1348 -3.7772 12 6 2.2052 2.0920 1.2673 13 1 2.5710 3.0995 1.0683 14 6 3.2223 1.3405 2.1285 15 6 0.8694 2.1723 2.0089 16 6 -0.1884 3.0201 1.2827 17 6 -0.5868 3.5644 2.6647 18 6 0.8437 3.2348 3.1227 19 1 -0.3633 0.5138 0.8900 20 1 -0.3632 0.5137 -0.8900 21 1 -0.3633 -1.0278 0.0005 22 1 1.8934 -0.5139 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 0.8484 0.0533 -3.2986 25 1 2.8857 0.3143 2.2758 26 1 4.1903 1.3370 1.6276 27 1 3.3153 1.8347 3.0955 28 1 0.5031 1.1965 2.3278 29 1 -0.9691 2.4287 0.8047 30 1 0.2363 3.7757 0.6218 31 1 -0.8108 4.6313 2.6658 32 1 -1.3528 2.9706 3.1636 33 1 1.5510 4.0492 2.9656 34 1 0.8949 2.8164 4.1279 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000325496667.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:35 Heat of formation + Delta-G solvation = 40.471564 kcal Electronic energy + Delta-G solvation = -13584.988008 eV Core-core repulsion = 11519.393591 eV Total energy + Delta-G solvation = -2065.594417 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.67781 -35.51573 -31.92991 -29.97967 -28.20281 -25.24942 -24.68800 -23.57295 -21.49003 -19.46045 -18.52462 -16.62404 -15.28062 -14.63800 -14.35954 -13.74421 -12.87876 -12.62467 -12.24176 -12.01850 -11.81029 -11.59632 -11.26386 -11.19461 -10.77096 -10.63631 -10.48147 -10.28929 -10.06979 -9.76251 -9.53697 -9.40818 -9.38302 -9.08054 -8.20042 -6.76588 -5.66681 -2.91815 3.45479 3.54113 3.54414 4.58450 5.21506 5.23354 5.31511 5.41970 5.54998 5.82485 5.95975 6.05190 6.25875 6.27792 6.32014 6.34427 6.42369 6.52852 6.71792 6.77650 6.87413 6.96579 7.02175 7.09094 7.20522 7.25647 7.35568 7.77538 7.89711 8.26262 8.46756 9.36588 10.01424 10.47031 11.36889 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.040983 B = 0.011935 C = 0.011716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.044223 B = 2345.549179 C = 2389.341798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.170 3.830 3 N -0.590 5.590 4 C -0.242 4.242 5 H 0.072 0.928 6 C -0.004 4.004 7 N -0.893 5.893 8 Si 0.886 3.114 9 H -0.292 1.292 10 H -0.296 1.296 11 H -0.283 1.283 12 C 0.182 3.818 13 H 0.058 0.942 14 C -0.160 4.160 15 C -0.116 4.116 16 C -0.114 4.114 17 C -0.149 4.149 18 C -0.138 4.138 19 H 0.022 0.978 20 H 0.093 0.907 21 H 0.011 0.989 22 H 0.078 0.922 23 H 0.003 0.997 24 H 0.249 0.751 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.041 0.959 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.592 2.527 8.407 8.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.044 3.956 3 N -0.311 5.311 4 C -0.370 4.370 5 H 0.089 0.911 6 C -0.201 4.201 7 N -0.539 5.539 8 Si 0.717 3.283 9 H -0.219 1.219 10 H -0.223 1.223 11 H -0.208 1.208 12 C 0.074 3.926 13 H 0.076 0.924 14 C -0.219 4.219 15 C -0.136 4.136 16 C -0.152 4.152 17 C -0.187 4.187 18 C -0.176 4.176 19 H 0.041 0.959 20 H 0.111 0.889 21 H 0.030 0.970 22 H 0.097 0.903 23 H 0.022 0.978 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.633 2.444 8.242 8.620 hybrid contribution 0.381 0.102 -0.858 0.944 sum -0.251 2.546 7.385 7.815 Atomic orbital electron populations 1.22582 0.99410 0.97819 1.01777 1.20680 0.92468 0.84789 0.97615 1.44204 1.76067 1.10411 1.00396 1.19295 1.33276 1.00926 0.83546 0.91050 1.24627 0.98329 1.00116 0.96990 1.70211 1.26987 1.31971 1.24776 0.86477 0.80765 0.77667 0.83397 1.21917 1.22273 1.20814 1.20302 0.91299 0.94886 0.86122 0.92368 1.22240 1.00210 1.00726 0.98744 1.23160 0.98264 0.96863 0.95326 1.22707 0.98617 0.99170 0.94666 1.22882 0.96784 0.99960 0.99040 1.22962 0.96820 0.99636 0.98218 0.95931 0.88891 0.96963 0.90337 0.97848 0.94078 0.93336 0.93263 0.94032 0.90181 0.91828 0.90484 0.92571 0.91205 0.90765 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 9.08 37.16 0.34 -3.33 16 2 C 0.17 4.13 5.23 -4.04 -0.02 4.10 16 3 N -0.59 -14.38 2.34 -165.65 -0.39 -14.77 16 4 C -0.24 -6.52 9.68 -15.06 -0.15 -6.66 16 5 H 0.07 1.91 7.80 -52.49 -0.41 1.51 16 6 C 0.00 -0.11 4.87 -17.43 -0.08 -0.19 16 7 N -0.89 -25.15 8.50 55.49 0.47 -24.68 16 8 Si 0.89 21.79 29.64 -169.99 -5.04 16.75 16 9 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 10 H -0.30 -7.39 7.11 56.52 0.40 -6.98 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 C 0.18 3.71 2.42 -67.93 -0.16 3.55 16 13 H 0.06 1.21 7.70 -51.92 -0.40 0.81 16 14 C -0.16 -2.89 9.20 37.16 0.34 -2.55 16 15 C -0.12 -2.11 1.93 -89.71 -0.17 -2.28 16 16 C -0.11 -2.11 7.05 -25.92 -0.18 -2.30 16 17 C -0.15 -2.24 8.07 -25.92 -0.21 -2.45 16 18 C -0.14 -2.09 7.44 -25.83 -0.19 -2.28 16 19 H 0.02 0.48 4.11 -51.93 -0.21 0.27 16 20 H 0.09 2.48 6.15 -51.93 -0.32 2.16 16 21 H 0.01 0.25 8.14 -51.92 -0.42 -0.17 16 22 H 0.08 2.14 5.96 -51.93 -0.31 1.83 16 23 H 0.00 0.08 6.37 -51.93 -0.33 -0.25 16 24 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 25 H 0.05 0.89 6.54 -51.93 -0.34 0.55 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.04 0.64 7.97 -51.93 -0.41 0.23 16 28 H 0.08 1.52 6.63 -51.93 -0.34 1.18 16 29 H 0.06 1.27 6.98 -51.93 -0.36 0.91 16 30 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 31 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.09 8.05 -51.93 -0.42 0.67 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 258.13 15.07 3.89 3.89 Total: -1.00 -27.32 258.13 -7.09 -34.41 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -5.53 Total: -1.21 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -0.49 Total: -14.40 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.08 Total: -39.45 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.04 Total: 16.75 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -27.32 -7.09 -34.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325496667.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.878 kcal (2) G-P(sol) polarization free energy of solvation -27.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds